mRNA_L-elsbetiae_contig686.15615.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig686.15615.1 vs. uniprot
Match: A0A6H5JFG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG9_9PHAE) HSP 1 Score: 430 bits (1106), Expect = 1.050e-117 Identity = 832/2405 (34.59%), Postives = 1019/2405 (42.37%), Query Frame = 1
Query: 682 AGADGASSVGAARRPARNLRRPRQEPSKKSEXXXXXXXEASA-----VLPPSDDAIGLSVGMELIPGFEDTIDSHFMTTLLQKSPDAQ-----SSDPVSAFATADSHGLEAAASGDRDGSGDGGMGFGIDPDASMDFAAGLLLGSDTQPS------AAPATVVAADAKQDNVPEFAPKTGADRAASDTGLGAAPASTAHRESGLILPSPPPAEARADGAVTVVAAAVPXXSPTTLPSGLVXXXXXXXXXXXXXXPPRAAWSPPAPSSELPAQTGXXAAVPASSGAAGALKT------------------AISPSAAKSDNRTEQPKHRAADP--SRRTTRQQTEARTKRSPAATAN-----------------------AAKASRGRQKVAKPVGRQQGKPRPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXPADNVSDGAQVDAGTEARAXXXXXXXXXXXXXXXXXXTARPALTRPVVLDAGTTAKRPRKAPXXXXXVRGAPAPQTALLPPPLSVLVPP--GILYNPSAPRAIPGVGIGGF--------SPPXXXXXXXXXXXXXXXSRPLPRKVSLRFSPRDASTEDKLSKHGYIPFQKLTAPLWKPLEAVFKFMVKKWSEVAYSDLNSIRIVFDVAEVDRNGSTVTSLAPSSSSSAPSAPAGDRAPAPPAHQATTTVVWSAEHSSKPLVDLVSSLPRATLERIRDEEALSLTYTFSTGPVGPPPSQGSAPWDT-PEGHPGTA--------AALRPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDRA------AEGEGAAVP--------------AAGDGAAPLGLASGLEEXXXXXXXXXXXXXXXXXXXXPTSGRVRRGTRGD----AAMKKHYKNVTKLFKRQGVLSPPA-AHFLPGGLFARMHSASAAAAAXXXIGAAGTPV-GAGPVPATVGVSPGSSVETLLSAAREKAEAGRDNSSHPAVEDPMAERFDGGFDASNGGG---FEYFGSDANSEAEGXXXXXXXXXXXXGALVGEDTCMAFFGGNGVKLLVDPSPPPTKTGEA----ERAGEEEQEKGAAVGVAEPAVPTVSPPTTGGVEAAA---------SPPQPVS-------GEAQPAKDALLPPAQAAPLEARPTVRPAPVSPPHGDCALVGEETCMALFGGSGVELLVDP---PSAAGVGSA----------------TGAREEGLEGVGGVSAAEPAGLQPAPAPPAGNLAASASAARLAGGETREQTQPESPRSSGRLAAEAGVTAELVSTPPSPASGAGVVAGEDAQAAEASGGAEKARPTVQQVPPPPLNGSPPVRVAGS--------RRLATDAKQPXXXXXXXXXXXXXXXAAVAGT-ELGDATPS--DPPPRTANGPAVMPAVERLPPPTSQSP-----PVFKMGKLPNRARFARTSPPASAAAAPSVVA-----------AERAPANQSCAGPSTSPA----QAPPRP--PSXXARAVPSLSNGDEVGHGTGCAGPPWIVSVSI--TCLFLCVYFAKQPAQQVIPASGVVPETAAG--------------------------------------CKDAGGXXXXXXXXXXXXXXXXXXXXXVQNAAGTAGVGXXXXXTAAEDAVLSKTRRKRKLTRSHSNGGDPASFGSSGGGCSSRPEADEGQVSKKTRRDGARSTAAAAATLPQAGGIPGKSGAKRRRCGSGRGGTKEGPERKRIAPTIQSSGGGPPQRATTR---------VSDPGVDVPPAIADAPALXXXXXTSASRPFAFASSKKAGVEASGKGL------PPPPLS--ATPLPSSPPSGG---GDVAAVMSADP---ESESAGVCASVPRPAGACAAAVGDGDGVA---------AVPAVEASPAARTPAXXXXXXXVKARPFAFAA----AAQKGERGELLRAGWSLPTVAAVAAGRAATPSGRSDLLPGRDARASSLHASSPPH---EGGGAAERFVSPPMLPAPV----RNSVSASLSLSMSPEEVQAGYSEAWSSLPSCFWDESSLVGGG---AADGGVTRWLALPHATRPTLGGTTAVAATATPPVXXXXXXVSSPVAAPFCEGHRGDGGRDTGVAGATAPR--GAGPAVELAQRDEKQSRWTSFCTAFAASRGSXXXXXXXFAAAAVGASST----RATEEARSLPTLIRLGRSMTKGVAPAVEKGNPEGEG-------------AAAAPXXXXXXXXXXXXXXXLAAGELAAGEVPQTAGGVAGATGAPIAPASASLVVAGRPLGNSGAVPPAGARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNLPRKRAKKKGRIAPMFVSSLPPDSFGTIASSFSSNRR 7044
A A G +S RRPARNLRRP XXXXXXX V PP + LS GMELIPGFEDTIDSHFMT LLQ+ D Q +S SAFA+A+S L A D G+ +GFG +P+ S+ F LL+G DTQPS AA A ++ + VP K AD S G G + A A ++ LP PPP +A A P LP+ + XXXXXXXX +++ SS PA++ AA SS + A SP R E A+DP ++ +TR++T+ P TA ++ A G +K A Q PR + PA + + AGT PA+ R V D +K+P+ A + AP +VP G ++ +A G+G GGF PP R LPRKVSLRFSPRD STE K+S+HGY+PFQKLTAPL KPLEAVFKFMVKKWSEVAYSDLNSIRIVFD D T + P+ S A DR TVVW AE S +PL+DLVS+LP L+R+ +E+ALSL+YTF TGPVGPPPS+GSAPWD PE P A A RP P XXXXXXXXXXXXX A G P A+G A +A+ XXXXXXX P+ G + G +GD A +KKHYKN++++ +RQG+ SPP HFLPGGLFARMH+A+ A A AA + G VPA +PGSS + R+ + P D DG D+ GGG FE FG DA++E GAL+GE+TCMA FGGNGV+LLVDPSPP G ERAG + + AA V SPP GG+ A P +S E P D L + + + A AP SPP D L+GEETCMALFGGSGVELLVDP P+ AG +A T A E + +GG A E +PAPPA +++ P + + P PA G V A S P + V P L+ S PV AG +R QP A+ T A+P+ +P P+T+ + P VE SP PV K+G LP RA+F R P AAA + A+ PA S AG +PA + PP P P A AV +G A P + T CV A A+ V P +G+ PE AA XXXXXXXXXXXXXXXXXXXXX XXXXX +H+ VS+ ++ KRRR GSG G EGP RKR+APT + G P V+ P D P +A +PA + +RPFAFAS+ +A S L PP P++ T P G D+A V +A+ E ES A+ GA + A G +G A A PAV A+ A+ PA KAR FAFAA AA+KG+RGELLR G T + A GR AT S + + L ++SPP EG A +SPP P PV R SASLSLSMS EEVQAGYSEAWSS+PSC WD ++L+ G A +G VTRWLALP+A P+LGG+ A A TPP +S VA P G GR A T P+ A P L QR+EK+S W SFC AF +SRGS AA AS+T RA EARSLPTLIRLGRSMTKGV+P + P G+G XXXXXXXXXXXXXXX E TA G A S SL V G ++ RG XXXXXXXXXXXX T LP++R+KKKGRIAP FVS+L PDSFGT+ ++FSSNRR
Sbjct: 181 AAAGGTASAVTPRRPARNLRRPXXXXXXXXXXXXXXXXXXXXXPDLPVAPPVS-GVSLSAGMELIPGFEDTIDSHFMTALLQRGSDTQPGVSSASVSASAFASAESQVLAANNXXXXDPGGEEVVGFGSNPELSLGFLDALLVGYDTQPSELNAADAADAKGTPGNSSESAVPVVL-KAAADDGGSADGAGVSIARDAGGDAAPSLP-PPPGQASA---------------PPLLPTRDILCPAAVXXXXXXXXXTLSSFR----SSRHPARSSPAAASHPSSVSLSXXXXXXXXXXXXXXXXXXXXXXAASPCGESRTTRVELAT--ASDPGVAKLSTRRKTD-----KPKRTATXXXXXXXIXXXXXXXXXXAPRRASSDAPPGEEKAA-----QLADPRAVEPASTIQTTKTLPKEKAMEPQQEGAGAVPASALP---RASAGTTR----------GRVGAAVDEAMQTPAVRRDEVTDR---SKQPQAA--TQPQAKPAPXXXXXXXXXXXXXVVPSRTGSSFSGNAAVVTEGMGTGGFVGQPAGSARPPPVAAEAVRGRSPP---RQLPRKVSLRFSPRDESTEGKVSEHGYLPFQKLTAPLSKPLEAVFKFMVKKWSEVAYSDLNSIRIVFDADAGDTGVPTAAASTPALSQPXXXXXA-DR-----------TVVWGAELSKRPLLDLVSALPGPALDRVCEEQALSLSYTFLTGPVGPPPSRGSAPWDAAPEQEPAAAVRQTLTPTATPRPPPPVVAPTTMGRRQAVVVPRLGALGCPFSIPGVGGGAXXXXXXXXXXXXXXXXXXXXXXXXXARGMAWKAPVMVPPRXXXXXGNFASGSQA----MANXXXXXXXXXXXTAGAGALPNNAPRPSRGGGKGGVQGDTLANATLKKHYKNISRMLQRQGIASPPPLTHFLPGGLFARMHTAAVAGAIGNAAEAAQQALPGRVEVPARAS-APGSSAPAAVRRGRQDRIGEKQKKQDPPSPDSEKGFQDGAVDSGGGGGDGGFEDFGGDASNEV---GDDEARGDKASGALMGEETCMALFGGNGVELLVDPSPPGGTGGAVAGVDERAGAKTAKPDAAGPVQS------SPPLNGGMTATPXXXXXXXXXKPAGAISVGVLEKVKEVSPLTDPPLRRSTSTAVTAPARSAGAPASPPPADSTLMGEETCMALFGGSGVELLVDPSTSPTEAGEAAAXXXXXXXGGEQKRAGLTSASETPQQ-LGGRGAGEDKDSGRSPAPPA----------------LPQKSLPPHTVAXXXXXXXXXXXXXASAQPVLPARTVGAVVPSVKAAGVKSSVDGNVPPDSKLVLPSRLDSSAPVVCAGGSTRDNRVEQRTTQAVVQPKSGTSKPLPTTPPGTASAPSTARTAAASPATQEPLPQTSASVSSTP-VETAARSPGSSPLPAPRPVCKVGSLPTRAKFGRPRSPTVPAAATAXXXXXXXTTRAPEPADEGPARSSGAGTGKTPAGLGQRLPPSPEVPMAPAAAVKPGESGSSACFRRQPAPEPAVXXXXXXTTDSAGCVV-ADSEAEVVTPVNGIAPEVAASGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHTXXXXXXXXXXXXXXXXXXXXXXXXVVSRAAEKNSL---------------------VKRRRSGSGEG-ASEGPGRKRVAPTTAAPGATPXXXXXXXXXXXXXXXLVATPAADAPSVLAASPA-------AVARPFAFASADRAFKGRSPPLLLRVGTDPPRPIADEGTSAKGKRPFAGEIAADMAVVATANQPGCELESVFSPAAPNGARGATSTAPGAREGAAVAGSAAGDGASPAVCAAVASPPPA--------KARRFAFAATAAAAAKKGDRGELLRYGERPTTTSGDADGRGATASLGTVAPAAPVSNGPFLRSASPPGGDVEGYDPAGGLMSPPR-PPPVAVAAREIDSASLSLSMSREEVQAGYSEAWSSVPSCLWDGAALLDVGEQTAGEGPVTRWLALPNA-EPSLGGSVAAA---TPPPAPAIVAAAS-VAGPVASGEDCGFGRGEEAAPDTTPQCPSAAPLEGLTQREEKKSSWASFCAAFTSSRGS---------AAPTAASATSPGPRAAGEARSLPTLIRLGRSMTKGVSPVGDDDKPAGKGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESTLTASG---------AVRSQSLAVDCNDGGGKDSMSSETLRGSRRKRDGGAGTSGDGGLGCNSDAGGEEAXXXXXXXXXXXXAP----TALPKRRSKKKGRIAPTFVSTLQPDSFGTLTTAFSSNRR 2420
BLAST of mRNA_L-elsbetiae_contig686.15615.1 vs. uniprot
Match: D7FI25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI25_ECTSI) HSP 1 Score: 184 bits (467), Expect = 9.920e-43 Identity = 353/982 (35.95%), Postives = 409/982 (41.65%), Query Frame = 1
Query: 1 MADLGGDSASIM-GSFDPSAFTGRDEDLFLPGDSLFGFSVAAEI-GGGGPDVGGXXXXXXXXXXASFQGGSA-SMLFPP---------SASFQAMASLPPEPDSAAAGAVSAVGAAGVGAGACRRGXXXXXXXXXXXXXXXXXXXXX-KHSLDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVRKYKKAATKPRSPARPRRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSIGVGA------------GADGASSVGAARRPARNLRRPRQEPSKKSEXXXXXXXEASAVLPPSDDAIGLSVGMELIPGFEDTIDSHFMTTLLQKSPDAQ---SSDPVSAFATADSHGLEAAASGDRDGSGDGGMGFGIDPDASMDFAAGLLLGSDTQPSAAPATVVAADAK------QDNVPEFAPKTGADRAASDTGLGAAPASTA---------------------------------HRESGLILPSPPPAEARADGAVTVVAAAVPXXSPTTLPSGLVXXXXXXXXXXXXXXPPRAAWSPPAPSSELPAQTGXXAAVPASSGAAGALKTAISPSAAKSDN--RTEQPKHRAA-------------------------------DPSRRTTRQQTEARTKRSPAATANAAKASRGRQKVAKPVGRQQGKPRPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXPADNVSDGAQVDAGTEARAXXXXXXXXXXXXXXXXXXTARPALTRPVVLDAGTTAKRPRKAPXXXXXVRGAPAPQTALLPPPLSVLVPPGILYNPSAPRAIPG--------VGIGGF-----SPPXXXXXXXXXXXXXXXSRPLPRKVSLRFSPRDASTEDKLSKHGYIPFQKLTAPLWKPLEAVFKFMVKKWSEVAYSDLNSIRIVFDVAEVDRNGSTVTSLAPSSSSSAPSAPAGDRAPAPPAHQATTTVVWSAEHSSKPLVDLVSSLPRATLERIRDEE 2607
MAD+GGDSAS+M G DPSAFTGRDEDLFLPGDSLFGFS AA + G PDVGG SF GGSA S+LFPP S SFQ ASLPP PDSAAA +A GA V AG R K SLDA +A + KA XXXXXXXXXXXXXXXXXXXXXXXX S GVG A+G +S RRPARNL XXXXXXX S PS + L GMELIPGFEDTIDSHFMT LLQ+ D Q SS SAFA+A+S L A G+ +GFG DP S+ F LLLG TQPS A AADAK ++ A K AD AS G G + A XX XXXXXXXXXXXXXXP A+ +P++ + L TA P +AK +T++PK A + S+ + E PA+T A K + R+K +P +Q+G A GA VD EA A A PAL P V T + K P + PAPQ PP PP + SA + G +G+GGF P R LPRKVSLRFSPRD STE K+S+ GY+PFQKLTAPL KPLEAVFKFMVKKWSEVAYSDLNSIRI+FD D + V + SSA A TVVW AE S +PL+DLVS+LP L+R+ +E+
Sbjct: 1 MADIGGDSASMMMGPIDPSAFTGRDEDLFLPGDSLFGFSAAAGMEGNNAPDVGGGDGSNP-----SFPGGSAASLLFPPMASSPLQASSGSFQPSASLPPGPDSAAA---AAGGAVAVRAGKDRGNWSGEGDATSAAVQPPARAVLSLKQSLDAAIV--------------------------SAAARDAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKSKGSTGVGGRVVDAGKKATTTAANGTASAVTPRRPARNLXXXXXXXXXXXXXXXXXXXXXS----PSVSGVSLPAGMELIPGFEDTIDSHFMTALLQRGSDTQPGVSSASASAFASAESQVLAAXXXXXXXXXGEEVVGFGSDPGLSLGFPDALLLGCGTQPSELNAAA-AADAKGTPENHSESAAPVARKAAADDGASADGAGVSITRGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXASPCGESPTTRV------------------ELATASDPGSAKRSTIRKTDKPKRTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASQLAGARAVE------PASTMKATK-TLAREKAMEP--QQEGAGAVPASALPRASGGAARGRV-------------------GATVD---EAGAATPTTL-------------AEPALQTPAVRRDEVTDRS--KQPQAATQQQAKPAPQPL---PPSPPSRPPAAVVPSSAGSSFSGNTAVVTERMGMGGFVGQPAGPARPAAVAAEAVRGRSSPRQLPRKVSLRFSPRDESTESKVSERGYLPFQKLTAPLSKPLEAVFKFMVKKWSEVAYSDLNSIRIIFDA---DAGDTGVPA------SSAXXXXXXXXXXXXXXXXADRTVVWGAELSKRPLLDLVSALPGPALDRVCEEQ 867 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig686.15615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig686.15615.1 >prot_L-elsbetiae_contig686.15615.1 ID=prot_L-elsbetiae_contig686.15615.1|Name=mRNA_L-elsbetiae_contig686.15615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=2350bp MADLGGDSASIMGSFDPSAFTGRDEDLFLPGDSLFGFSVAAEIGGGGPDVback to top mRNA from alignment at L-elsbetiae_contig686:3746..15009+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig686.15615.1 ID=mRNA_L-elsbetiae_contig686.15615.1|Name=mRNA_L-elsbetiae_contig686.15615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11264bp|location=Sequence derived from alignment at L-elsbetiae_contig686:3746..15009+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig686:3746..15009+ >mRNA_L-elsbetiae_contig686.15615.1 ID=mRNA_L-elsbetiae_contig686.15615.1|Name=mRNA_L-elsbetiae_contig686.15615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=14100bp|location=Sequence derived from alignment at L-elsbetiae_contig686:3746..15009+ (Laminarionema elsbetiae ELsaHSoW15)back to top |