mRNA_L-elsbetiae_contig6847.15604.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6847.15604.1
Unique NamemRNA_L-elsbetiae_contig6847.15604.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 6.090e-70
Identity = 136/323 (42.11%), Postives = 193/323 (59.75%), Query Frame = 1
Query:    1 HSTFKLPFGDDAVDKSVCGIKAESQRAEVLKRASLIVWDEVVMSSKYSPEETLHLILQDLCQNDPPFGGKTILFSGDWRQVAPVLKHATETEIVEHAFLSSYLWSHVHRFRLTKCMRNKDDTPFAKTVLAVGEGKMKPVRLPDGSAAIPLKHTITNDDRTESVCSVDGITKFEDLIHKVYPDLLEVDHNTYNDRAILAATNDNIDKINDYILDKMPGRARHQLSSDKIITDD----------EEIRYLDVPGIPPHDLCLKTGALVFFIRNIDFDNGLVNGKRGIVRGIS--KRIIDGEVIADGAP--IVKIPRFVSR*KLDR 927
            HS FKLP  D+     VC I +++QRAE++++++LI+WDE+ M+ +Y  E  L   L+DL   D PFGGKTILFSGDWRQ  P++K+A  T+ V+ AF+SS LW  V RFRL K  R+K+D  +A  V ++GEG    V + DGS   PL +    D  T +   +   T F++L+  VYPDL +     +N RAILA TN +ID+ ND I D  PG      SSD +I+D+          E +  L+V GIPPH+L LKT  L    RN++F  GLVNG++ +V  +S   R++  +++ +  P  IV IPR   + K+ R
Sbjct:   48 HSMFKLPMDDNLTPSCVCNISSQTQRAELIRQSNLIIWDELPMTHRYCVE-ALDRTLKDLMAVDQPFGGKTILFSGDWRQTGPIVKNAAPTDTVDAAFISSPLWKGVMRFRLNKSQRDKEDPQYASFVRSIGEGSRPTVTMSDGSKLTPLNNHDNED--TANHFQLRYTTDFDELLRFVYPDLSQQSR-IWNTRAILATTNHSIDRSNDTISDNRPGNYVSFFSSDSLISDEKNRRTAFASPEHLNQLNVQGIPPHELKLKTDTLALITRNLNFSEGLVNGQKCVVLAVSASSRVLQVQLLTEERPRPIVLIPRINFQGKVGR 366          
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.620e-60
Identity = 130/332 (39.16%), Postives = 180/332 (54.22%), Query Frame = 1
Query:    1 HSTFKLPFGDDAVDKSVCGIKAESQRAEVLKRASLIVWDEVVMSSKYSPEETLHLILQDLCQNDPPFGGKTILFSGDWRQVAPVLKHATETEIVEHAFLSSYLWSHVHRFRLTKCMRNKDDTPFAKTVLA------------VGEGKMKPVRLPDGSAAIPLKHTITNDDRTESVCS---VDGITKFEDLIHKVYPDLLEVDHNTYNDRAILAATNDNIDKINDYILDKMPGRARHQLSSDKIITDDEEIRY--------LDVPGIPPHDLCLKTGALVFFIRNIDFDNGLVNGKRGIVRGISKRIIDGEVIADGAPIVKIPRFVSR*KLDR 927
            HS FKLP  D  V  ++C I AESQRAEVL++  LIVWDE+ MS ++S E  L+L LQDL  ND   GGKT+L SGD RQ+ P +KH      ++ + +SS LW HV R RLT   R++ +  + +   +             G G        DG  A+PL + +    RT+S      +D    FE+LI  VY D+L  D   +  RAIL++TN  ID IN ++LD +PG      S D +   D  + +        +DV G+PPH L LK   +V   RN++F  GLVNG++ IVRG S RI+  E++   + +V IPR     K+ R
Sbjct:  363 HSMFKLPLEDKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVE-ALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPFIKHGGPAGTIDASLISSPLWPHVQRMRLTISQRHRKNAAYVRCFCSKCRYVGMSVCXXXGIGTQAHTTANDGIDAVPLAYRLFMKFRTDSPKDQFVIDNTDSFEELIDFVYQDILTADPTDFKARAILSSTNATIDLINSHVLDILPGDMLTAYSCDTVDPHDNNLDFVATADLNAIDVSGVPPHALELKLNCMVMITRNLNFKQGLVNGQKAIVRGYSTRIVHVELLDGLSSLVLIPRIRLNAKVGR 693          
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Match: A0A6H5JVN5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN5_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 2.430e-58
Identity = 124/306 (40.52%), Postives = 177/306 (57.84%), Query Frame = 1
Query:    1 HSTFKLPFGDDAVDKSVCGIKAESQRAEVLKRASLIVWDEVVMSSKYSPEETLHLILQDLCQNDPPFGGKTILFSGDWRQVAPVLKHATETEI-VEHAFLSSYLWSHVHRFRLTKCMRNKDDTPFAKTVLAVGEGKMKPVRLPDGSAAIPLKHTITNDDRTESVCSVDGITKFEDLIHKVYPDLLEVDHNTYNDRAILAATNDNIDKINDYILDKMPGRARHQLSSDKIITDD------------EEIRYLDVPGIPPHDLCLKTGALVFFIRNIDFDNGLVNGKRGIVRGIS--KRIIDGEVIAD 873
            HS FKLP  +  VD + C IK+ESQRAE++++ + I++DE+ M+ +   E TL   L+D+ +++  +GG TI FSGDWRQ  PV   AT  E  VE +F+SS LW    R RLT   R+++D  +A  V ++GE         DG+  +PL +T  +D  T    S+   T F DLI+ VYPD+ E D    NDRAILA TN +ID  ND I  +  G      SSD++I D             E +  +D PG+PPH L +K+ AL   IRN+ F  GLVNG++ ++RG+S   R++  E+ +D
Sbjct:   92 HSMFKLPLNEKLVDGAFCDIKSESQRAELIRKRTFIIFDELPMTHRCCIE-TLERTLRDIRRSEALYGGITICFSGDWRQCGPVAPFATPAETTVEASFISSDLWPKTKRMRLTMSQRDEEDPAYASFVRSIGEKIHPTTTFSDGAKRVPLSNT--HDTSTTDHFSLQYTTDFNDLINFVYPDIHE-DARHLNDRAILATTNISIDSCNDAISSRRHGDNVTFHSSDRLIKDHNNPASSTAFRSTEHLNNIDTPGVPPHQLQIKSDALAMLIRNLIFSEGLVNGQKVVIRGVSPNSRVVRVELSSD 393          
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.230e-52
Identity = 119/309 (38.51%), Postives = 160/309 (51.78%), Query Frame = 1
Query:    1 HSTFKLPFGDDAVDKSVCGIKAESQRAEVLKRASLIVWDEVVMSSKYSPEETLHLILQDLCQNDPPFGGKTILFSGDWRQVAPVLKHATETEIVEHAFLSSYLWSHVHRFRLTKCMRNKDDTPFAKTVLAVGEGKMKPVRLPDGSAAIPLKHTITNDDRTESVCSVDGITKFEDLIHKVYPDLLEVDHNTYNDRAILAATNDNIDKINDYILDKMPGRARHQLSSDKIITDDEEIRYLDVPGIPPHDLCLKTGALVFFIRNIDFDNGLVNGKRGIVRGISKRIIDGEVIADGAPIVKIPRFVSR*KLDR 927
            HS FKLP  +  V  ++C I AESQRAEVL++  LIVWDE+ MS ++S E  L+L LQDL  ND   GGKT+L SGD RQ+ PV+KH    E ++ + +SS LW HV R RLT   R +  T                    DG  A+PL +     D  +    +D    FE+LI  VY D+L  D   +  RAI    +DN                    + D + T D  +  +DV G+PPH L LK   +V   RN++F  GLVNG++ IVRG S RI+  E++   + +V IPR     K+ R
Sbjct:   48 HSMFKLPLEEKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVE-ALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPVVKHGGPAETIDASLISSPLWPHVQRMRLTISQRTQAHTTTD-----------------DGIDAVPLAYIHEVPDSPKDQFFIDNTDSFEELIDFVYQDILTADPTDFKARAICLDPHDN--------------------NLDFVATAD--LNAIDVSGVPPHALELKLNCMVMITRNLNFKQGLVNGQKAIVRGYSTRIVHVELLDGLSSLVLIPRIRLNAKVGR 316          
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Match: A0A6H5K5W5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W5_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 2.110e-47
Identity = 93/229 (40.61%), Postives = 139/229 (60.70%), Query Frame = 1
Query:   10 FKLPFGDDAVDKSVCGIKAESQRAEVLKRASLIVWDEVVMSSKYSPEETLHLILQDLCQNDPPFGGKTILFSGDWRQVAPVLKHATETEIVEHAFLSSYLWSHVHRFRLTKCMRNKDDTPFAKTVLAVGEGKMKPVRLPDGSAAIPLKHTITNDDRTESVCSVDGITKFEDLIHKVYPDLLEVDHNTYNDRAILAATNDNIDKINDYILDKMPGRARHQLSSDKIITDD 696
            FKLP  D      VC I  ++QRAE+++++ LI+WDE+ M+ +Y  E  L   ++DL + D  FGGKTILFSGDWRQ  P++K+ + T+ V+ AF+SS LW++VHR +LTK  R+++D  ++  V A+GEG      + D +      H +   D  +    +   T+F +L + VYPD+ + D   +N RAILA TN  ID+ ND I D+ PG     LSS  +I+D+
Sbjct:    2 FKLPMDDALTPTCVCNINTQTQRAELIRKSDLIIWDELPMTHRYCIE-ALDRTMKDLTKIDKLFGGKTILFSGDWRQTGPIVKNGSATDTVDAAFISSVLWTNVHRMKLTKSQRDREDPQYSAFVRAIGEGTHPTTAIHDSNVIALNNHNV---DDPQDHFQLQYTTEFNELFNFVYPDVTQ-DSRLWNKRAILATTNTAIDRSNDTISDEPPGPTCSFLSSVSLISDE 225          
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Match: UPI000BBE2DB7 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE2DB7)

HSP 1 Score: 176 bits (445), Expect = 5.190e-47
Identity = 118/332 (35.54%), Postives = 174/332 (52.41%), Query Frame = 1
Query:    1 HSTFKLPFGDDAVDKSVCGIKAESQRAEVLKRASLIVWDEVVMSSKYSPEETLHLILQDLCQN------DPPFGGKTILFSGDWRQVAPVLKHATETEIVEHAFLSSYLWSHVHRFRLTKCMR-NKDDTPFAKTVLAVGEGKMKPVRLPDGSAAIPLKHTITNDDRTESVCSVDGITKFEDLIHKV-----YPDLLEVDHNTYN-----DRAILAATNDNIDKINDYILDKMPGRARHQLSSDKI---ITDDEE---------IRYLDVPGIPPHDLCLKTGALVFFIRNIDFDNGLVNGKRGIVRGISKRIIDGEVI--ADGAPIVKIPRF 903
            HS FKLP   D  D S+C I   S  A +L +A LI+WDE  M+ +++  ETL   L+DL  +      D PFGGKT+L  GD+RQ+ PV+ H   ++ V  +   SYLW+    F L+  MR  ++D  FAK +L VG          DG A     H + +DD  + +     +    D  H+V     YP+ L   HN  N     +RA+L  TN  I ++N Y+L ++P +AR  LSSD +    T D++         +  L+ PG+P H LCLK GA V  +RN++ D+GL NG R +V  +  RII+ E++  ++    + +PR 
Sbjct:   72 HSRFKLPLTLD--DHSMCNIHRGSSLATLLSKADLIIWDEAPMAHRHA-FETLDRSLRDLLSHEDPLSADKPFGGKTVLLGGDFRQILPVVPHGKRSDTVLASLSKSYLWNLAKVFTLSINMRLRQEDKDFAKWILEVG----------DGDAETIDSHKVKHDDGDQIIVDESFLIPKSDFPHEVLASAAYPNFL---HNYRNKDYLRERAVLTPTNSTIHEVNSYLLSQVPSQAREYLSSDSVEVEATPDDDWTRNYPQEYLNSLEFPGLPNHRLCLKVGAPVMMLRNLNQDHGLCNGTRMVVSKLDDRIIEVEIMTGSEAGERILLPRI 387          
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Match: UPI00053FF0F2 (uncharacterized protein LOC104901240 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF0F2)

HSP 1 Score: 177 bits (448), Expect = 2.290e-46
Identity = 106/297 (35.69%), Postives = 166/297 (55.89%), Query Frame = 1
Query:    1 HSTFKLPFGDDAVDKSVCGIKAESQRAEVLKRASLIVWDEVVMSSKYSPEETLHLILQDLCQNDPPFGGKTILFSGDWRQVAPVLKHATETEIVEHAFLSSYLWSHVHRFRLTKCMRNKDDTPFAKTVLAVGEGKMKPVRLPDGSAAIPLKHTITNDDRTESVCSVDGITKFEDLIHKVYPDLLE-VDHNTYN-DRAILAATNDNIDKINDYILDKMPGRARHQLSSDKIITD------DEEIRYLDVPGIPPHDLCLKTGALVFFIRNIDFDNGLVNGKRGIVRGISKRIIDGEVI 867
            HSTF+LP   D+   S C     S+ A +LK  ++I+WDE  M+ +Y   E +   L+DL +ND PFGGK I+F GD+RQV PV+++ T T++++ +F+ S +W HV+   L + MR++DD  FA  + ++G G    V   D    +P  H +        + S+D ++  E LI +V+P+L + V    Y  D+AI+   N++ DKIND +++K  G  +   S D +  D       E +  +   G+PPH L LK G  +  +RNID  NGL NG R + R ++   ID E++
Sbjct:  251 HSTFQLPLQPDS--NSTCSFTKRSKTATILKHYTIIIWDEAPMTHRYQ-FEAVDRSLRDLMENDLPFGGKIIVFGGDFRQVLPVVRNGTRTQMIDASFVKSPIWRHVNILHLRENMRSRDDNTFATRLFSIGNGDEPTVS--DQMIKLP-NHMV--------IPSIDDVS-IEMLIDQVFPNLSQHVGEGNYMVDKAIITPLNEDADKINDKVVEKFLGEGKTYYSIDSVPEDRRNLYQQEFLNSISASGLPPHALTLKPGVPLRLLRNIDPKNGLCNGTRLLCRSLNNHFIDAEIL 532          
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Match: UPI000B8FAD6B (ATP-dependent DNA helicase RRM3-like n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B8FAD6B)

HSP 1 Score: 177 bits (450), Expect = 3.840e-46
Identity = 116/320 (36.25%), Postives = 174/320 (54.37%), Query Frame = 1
Query:    1 HSTFKLPFGDDAVDKSVCGIKAESQRAEVLKRASLIVWDEVVMSSKYSPEETLHLILQDLCQNDPP------FGGKTILFSGDWRQVAPVLKHATETEIVEHAFLSSYLWSHVHRFRLTKCMRN---------KDDTPFAKTVLAVGEGKMKPVRLPDGSAAIPLKHTITNDDRTESVCSVDGITKFEDLIHKVYPDLLEVDH--NTYNDRAILAATNDNIDKINDYILDKMPGRARHQLSSDKII-------TDDEEIRYLDV------PGIPPHDLCLKTGALVFFIRNIDFDNGLVNGKRGIVRGISKRIIDGEVIA 870
            HS F +P   +  + S+C IK  S  AE+LK+ASLI+WDE  M+ K++  E L+  + D+  +D        FGGK ++F GD+RQ+ PV+++ +  +I+  +  SSY+WS+V   RLTK MR          K+ T F+  +L +GEGK+      DG + I +   +   D ++ +          DLI+ VYP +L+  H  N ++DRAILA TN+ +  IND ++   PG  +  LSSD I        T DE++   DV       G+P H L LK G  +  +RNID  NGL NG R  V  +  R+I+ E+I+
Sbjct:  351 HSRFSIPL--NLTEDSMCFIKPNSDAAELLKKASLIIWDEAPMTHKHA-FEALNRTMNDILISDNHSSSNIMFGGKVVVFGGDFRQILPVVQNGSRHDIINASLCSSYIWSNVKVLRLTKNMRLSLGIDSTNIKETTAFSNWLLDIGEGKVGEAN--DGESTIDIPEDLLIGDSSDPII---------DLINFVYPSILDRFHEPNYFDDRAILAPTNEVVQSINDRLMSLFPGDEKEYLSSDSICQSDHVNETFDEKLYSPDVLNGLKLSGVPNHQLVLKVGVPIMLLRNIDQKNGLCNGTRLRVLYLGNRVIEAEIIS 656          
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Match: UPI001652FF54 (uncharacterized protein LOC110890796 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652FF54)

HSP 1 Score: 177 bits (448), Expect = 2.270e-45
Identity = 116/320 (36.25%), Postives = 174/320 (54.37%), Query Frame = 1
Query:    1 HSTFKLPFGDDAVDKSVCGIKAESQRAEVLKRASLIVWDEVVMSSKYSPEETLHLILQDLC------QNDPPFGGKTILFSGDWRQVAPVLKHATETEIVEHAFLSSYLWSHVHRFRLTKCMRN---------KDDTPFAKTVLAVGEGKMKPVRLPDGSAAIPLKHTITNDDRTESVCSVDGITKFEDLIHKVYPDLLEVDH--NTYNDRAILAATNDNIDKINDYILDKMPGRARHQLSSDKII-------TDDEEIRYLDV------PGIPPHDLCLKTGALVFFIRNIDFDNGLVNGKRGIVRGISKRIIDGEVIA 870
            HS F +P   +  + S+C IK  S  AE+LK+ASLI+WDE  M+ K++  E L+  + D+        ++  FGGK ++F GD+RQ+ PV+++ +  +IV  +  SSY+WS+V   RLTK MR          K+ T F+  +L +GEGK+      DG + I +   +   D ++ +          DLI+ VYP +L+  H  N ++DRAILA TN+ +  IND ++   PG  +  LSSD I        T DE++   DV       G+P H L LK G  +  +RNID  NGL NG R  V  +  R+I+ E+I+
Sbjct: 1223 HSRFSIPL--NLTEDSMCFIKPNSDAAELLKKASLIIWDEAPMTHKHA-FEALNRTMNDILISGNHSSSNIMFGGKVVVFGGDFRQILPVVQNGSRHDIVNASLCSSYIWSNVKVLRLTKNMRLSLGIDSTNIKETTAFSNWLLDIGEGKVGEAN--DGESTIDIPEDLLIGDSSDPII---------DLINFVYPSILDRFHEPNYFDDRAILAPTNEVVQSINDRLMSLFPGDEKEYLSSDSICQSDHVNETFDEKLYSPDVLNGLKLSGVPNHQLVLKVGVPIMLLRNIDQKNGLCNGTRLRVLYLGNRVIEAEIIS 1528          
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Match: A0A6H5GVM8_9HEMI (ATP-dependent DNA helicase (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GVM8_9HEMI)

HSP 1 Score: 177 bits (448), Expect = 2.370e-45
Identity = 108/297 (36.36%), Postives = 168/297 (56.57%), Query Frame = 1
Query:    1 HSTFKLPFGDDAVDKSVCGIKAESQRAEVLKRASLIVWDEVVMSSKYSPEETLHLILQDLCQNDPPFGGKTILFSGDWRQVAPVLKHATETEIVEHAFLSSYLWSHVHRFRLTKCMRNKDDTPFAKTVLAVGEGKMKPVRLPDGSAAIPLKHTITNDDRTESVCSVDGITKFEDLIHKVYP---DLLEVDHNTYNDRAILAATNDNIDKINDYILDKMPGRARHQLSSDKIITDDEEIRYLDVP---------GIPPHDLCLKTGALVFFIRNIDFDNGLVNGKRGIVRGISKRIID 855
            HS FK PF  D  + SVC I  +S+RA++++  ++IVWDE    S+   +  L   L+D+ Q + PFGGK I+F+GD+RQ+ P++   T  ++V  +  SS  W+ ++ F L+   R   D  F++ +LAVGEG+++PVR+ D    IPL++  T             ++   DLI  VYP   D +E + +    R +L+ TN  ID IN  +LD+ PG   H  S+D+  +D ++ R+L +P         G+P HDL LK G++   +RN+ FD GLVNG + IVR  +   I+
Sbjct: 1752 HSLFKFPFEID--ENSVCNISIQSERADLIRHTTVIVWDEFSTVSRLMLK-ALDRALKDITQCELPFGGKIIVFAGDFRQIPPIVPSNTPVDVVNASVKSSPFWAELNVFTLSTAQRTAGDELFSRFLLAVGEGRVEPVRVAD-ETLIPLRNIQT-------------VSNLNDLIDFVYPPNDDSIE-NPDLSRSRTVLSGTNAAIDDINRTVLDRCPGDVIHLYSADRTTSDVDDPRFLPLPEFLHSLTHPGVPDHDLQLKIGSVCTVLRNLSFDCGLVNGTKVIVRNATAAAIE 2030          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6847.15604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9C5_9PHAE6.090e-7042.11ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JZJ6_9PHAE2.620e-6039.16ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JVN5_9PHAE2.430e-5840.52ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JNR7_9PHAE1.230e-5238.51ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K5W5_9PHAE2.110e-4740.61ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI000BBE2DB75.190e-4735.54ATP-dependent DNA helicase PIF1-like n=1 Tax=Brass... [more]
UPI00053FF0F22.290e-4635.69uncharacterized protein LOC104901240 n=1 Tax=Beta ... [more]
UPI000B8FAD6B3.840e-4636.25ATP-dependent DNA helicase RRM3-like n=1 Tax=Helia... [more]
UPI001652FF542.270e-4536.25uncharacterized protein LOC110890796 n=1 Tax=Helia... [more]
A0A6H5GVM8_9HEMI2.370e-4536.36ATP-dependent DNA helicase (Fragment) n=1 Tax=Nesi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6847contigL-elsbetiae_contig6847:2389..3487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score150.6
Seed ortholog evalue1e-33
Seed eggNOG ortholog161934.XP_010689382.1
KEGG koko:K07466,ko:K15255
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37I5H@33090,3GC0A@35493,COG0507@1,COG2801@1,KOG0017@2759,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03032,ko03400
Exons1
Model size1099
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6847.15604.1prot_L-elsbetiae_contig6847.15604.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6847 2515..3303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.819751-UTR-L-elsbetiae_contig6847:2388..25141622816757.819751-UTR-L-elsbetiae_contig6847:2388..2514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6847 2389..2514 +
1691683790.8322704-UTR-L-elsbetiae_contig6847:2388..25141691683790.8322704-UTR-L-elsbetiae_contig6847:2388..2514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6847 2389..2514 +
1622816757.841365-UTR-L-elsbetiae_contig6847:3303..34871622816757.841365-UTR-L-elsbetiae_contig6847:3303..3487Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6847 3304..3487 +
1691683790.8536115-UTR-L-elsbetiae_contig6847:3303..34871691683790.8536115-UTR-L-elsbetiae_contig6847:3303..3487Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6847 3304..3487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.8317058-CDS-L-elsbetiae_contig6847:2514..33031622816757.8317058-CDS-L-elsbetiae_contig6847:2514..3303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6847 2515..3303 +
1691683790.844632-CDS-L-elsbetiae_contig6847:2514..33031691683790.844632-CDS-L-elsbetiae_contig6847:2514..3303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6847 2515..3303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6847.15604.1

>prot_L-elsbetiae_contig6847.15604.1 ID=prot_L-elsbetiae_contig6847.15604.1|Name=mRNA_L-elsbetiae_contig6847.15604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=263bp
MSSKYSPEETLHLILQDLCQNDPPFGGKTILFSGDWRQVAPVLKHATETE
IVEHAFLSSYLWSHVHRFRLTKCMRNKDDTPFAKTVLAVGEGKMKPVRLP
DGSAAIPLKHTITNDDRTESVCSVDGITKFEDLIHKVYPDLLEVDHNTYN
DRAILAATNDNIDKINDYILDKMPGRARHQLSSDKIITDDEEIRYLDVPG
IPPHDLCLKTGALVFFIRNIDFDNGLVNGKRGIVRGISKRIIDGEVIADG
APIVKIPRFVSR*
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mRNA from alignment at L-elsbetiae_contig6847:2389..3487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6847.15604.1 ID=mRNA_L-elsbetiae_contig6847.15604.1|Name=mRNA_L-elsbetiae_contig6847.15604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1099bp|location=Sequence derived from alignment at L-elsbetiae_contig6847:2389..3487+ (Laminarionema elsbetiae ELsaHSoW15)
CACTCAACTTTCAAACTGCCTTTCGGTGATGACGCCGTCGACAAAAGCGT TTGTGGGATCAAGGCTGAGTCTCAACGTGCCGAAGTACTAAAACGTGCGT CGTTAATTGTTTGGGATGAAGTGGTGATGTCTTCCAAGTACTCACCAGAA GAAACTCTACACTTAATACTGCAAGACCTCTGCCAGAACGACCCGCCTTT CGGGGGCAAAACAATTCTATTTAGTGGAGACTGGCGTCAAGTTGCACCAG TTCTAAAACATGCCACGGAAACAGAAATAGTTGAGCATGCCTTCCTGTCG TCATACTTGTGGAGTCATGTTCACAGATTCCGTCTGACAAAGTGTATGAG AAATAAGGACGATACCCCTTTCGCCAAAACCGTGTTGGCTGTTGGTGAAG GAAAGATGAAACCTGTCCGATTGCCTGATGGATCTGCTGCAATACCACTC AAACATACAATTACAAACGATGATCGCACCGAATCAGTTTGTTCCGTTGA TGGTATCACAAAATTCGAGGATCTCATTCATAAAGTATACCCTGATCTGC TCGAAGTAGACCATAACACATACAATGACCGCGCCATCCTCGCAGCAACG AATGACAATATCGATAAGATAAACGATTACATCCTCGATAAAATGCCTGG TCGCGCTCGTCATCAGCTAAGTTCAGACAAAATCATAACAGACGATGAAG AAATAAGGTATTTAGATGTTCCGGGAATACCGCCCCATGACCTCTGCCTC AAGACAGGAGCTTTAGTGTTCTTCATAAGAAACATCGATTTCGATAATGG ACTCGTCAACGGCAAAAGAGGAATAGTTCGAGGTATTTCTAAACGTATAA TTGATGGCGAAGTCATCGCGGATGGAGCGCCTATAGTCAAAATACCACGT TTTGTTTCGAGATAAAAGTTGGATCGCGTGGCATCACTTTCCACCGTTTC CAGTTCCCGGTAAGGCTCTGTTACCAATGACAATCAACAAATCCCAAGGA CAGACCTTGAAGCAAGTAGGCCTTGATCGTCGGGGTGAAGTTTTCTGCCA CGGTCAGCTCTACGTCGCCCTAAGCAGCACAACATGTCGCGACAACCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6847:2389..3487+

>mRNA_L-elsbetiae_contig6847.15604.1 ID=mRNA_L-elsbetiae_contig6847.15604.1|Name=mRNA_L-elsbetiae_contig6847.15604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1578bp|location=Sequence derived from alignment at L-elsbetiae_contig6847:2389..3487+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCCAAGTACTCACCAGAAGAAACTCTACACTTAATACTGCAAGA
CCTCTGCCAGAACGACCCGCCTTTCGGGGGCAAAACAATTCTATTTAGTG
GAGACTGGCGTCAAGTTGCACCAGTTCTAAAACATGCCACGGAAACAGAA
ATAGTTGAGCATGCCTTCCTGTCGTCATACTTGTGGAGTCATGTTCACAG
ATTCCGTCTGACAAAGTGTATGAGAAATAAGGACGATACCCCTTTCGCCA
AAACCGTGTTGGCTGTTGGTGAAGGAAAGATGAAACCTGTCCGATTGCCT
GATGGATCTGCTGCAATACCACTCAAACATACAATTACAAACGATGATCG
CACCGAATCAGTTTGTTCCGTTGATGGTATCACAAAATTCGAGGATCTCA
TTCATAAAGTATACCCTGATCTGCTCGAAGTAGACCATAACACATACAAT
GACCGCGCCATCCTCGCAGCAACGAATGACAATATCGATAAGATAAACGA
TTACATCCTCGATAAAATGCCTGGTCGCGCTCGTCATCAGCTAAGTTCAG
ACAAAATCATAACAGACGATGAAGAAATAAGGTATTTAGATGTTCCGGGA
ATACCGCCCCATGACCTCTGCCTCAAGACAGGAGCTTTAGTGTTCTTCAT
AAGAAACATCGATTTCGATAATGGACTCGTCAACGGCAAAAGAGGAATAG
TTCGAGGTATTTCTAAACGTATAATTGATGGCGAAGTCATCGCGGATGGA
GCGCCTATAGTCAAAATACCACGTTTTGTTTCGAGATAAATGTCTTCCAA
GTACTCACCAGAAGAAACTCTACACTTAATACTGCAAGACCTCTGCCAGA
ACGACCCGCCTTTCGGGGGCAAAACAATTCTATTTAGTGGAGACTGGCGT
CAAGTTGCACCAGTTCTAAAACATGCCACGGAAACAGAAATAGTTGAGCA
TGCCTTCCTGTCGTCATACTTGTGGAGTCATGTTCACAGATTCCGTCTGA
CAAAGTGTATGAGAAATAAGGACGATACCCCTTTCGCCAAAACCGTGTTG
GCTGTTGGTGAAGGAAAGATGAAACCTGTCCGATTGCCTGATGGATCTGC
TGCAATACCACTCAAACATACAATTACAAACGATGATCGCACCGAATCAG
TTTGTTCCGTTGATGGTATCACAAAATTCGAGGATCTCATTCATAAAGTA
TACCCTGATCTGCTCGAAGTAGACCATAACACATACAATGACCGCGCCAT
CCTCGCAGCAACGAATGACAATATCGATAAGATAAACGATTACATCCTCG
ATAAAATGCCTGGTCGCGCTCGTCATCAGCTAAGTTCAGACAAAATCATA
ACAGACGATGAAGAAATAAGGTATTTAGATGTTCCGGGAATACCGCCCCA
TGACCTCTGCCTCAAGACAGGAGCTTTAGTGTTCTTCATAAGAAACATCG
ATTTCGATAATGGACTCGTCAACGGCAAAAGAGGAATAGTTCGAGGTATT
TCTAAACGTATAATTGATGGCGAAGTCATCGCGGATGGAGCGCCTATAGT
CAAAATACCACGTTTTGTTTCGAGATAA
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