mRNA_L-elsbetiae_contig6846.15602.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6846.15602.1
Unique NamemRNA_L-elsbetiae_contig6846.15602.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6846.15602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6846contigL-elsbetiae_contig6846:1132..4142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size965
Cds size963
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.718567-CDS-L-elsbetiae_contig6846:1131..15881622816757.718567-CDS-L-elsbetiae_contig6846:1131..1588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 1132..1588 +
1691683790.7484112-CDS-L-elsbetiae_contig6846:1131..15881691683790.7484112-CDS-L-elsbetiae_contig6846:1131..1588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 1132..1588 +
1622816757.7293918-CDS-L-elsbetiae_contig6846:1767..19201622816757.7293918-CDS-L-elsbetiae_contig6846:1767..1920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 1768..1920 +
1691683790.7598279-CDS-L-elsbetiae_contig6846:1767..19201691683790.7598279-CDS-L-elsbetiae_contig6846:1767..1920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 1768..1920 +
1622816757.7398586-CDS-L-elsbetiae_contig6846:2283..23521622816757.7398586-CDS-L-elsbetiae_contig6846:2283..2352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 2284..2352 +
1691683790.7710888-CDS-L-elsbetiae_contig6846:2283..23521691683790.7710888-CDS-L-elsbetiae_contig6846:2283..2352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 2284..2352 +
1622816757.751636-CDS-L-elsbetiae_contig6846:2512..25751622816757.751636-CDS-L-elsbetiae_contig6846:2512..2575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 2513..2575 +
1691683790.7838306-CDS-L-elsbetiae_contig6846:2512..25751691683790.7838306-CDS-L-elsbetiae_contig6846:2512..2575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 2513..2575 +
1622816757.7619832-CDS-L-elsbetiae_contig6846:3532..35951622816757.7619832-CDS-L-elsbetiae_contig6846:3532..3595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 3533..3595 +
1691683790.7992973-CDS-L-elsbetiae_contig6846:3532..35951691683790.7992973-CDS-L-elsbetiae_contig6846:3532..3595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 3533..3595 +
1622816757.7730634-CDS-L-elsbetiae_contig6846:3779..38601622816757.7730634-CDS-L-elsbetiae_contig6846:3779..3860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 3780..3860 +
1691683790.809641-CDS-L-elsbetiae_contig6846:3779..38601691683790.809641-CDS-L-elsbetiae_contig6846:3779..3860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 3780..3860 +
1622816757.7854304-CDS-L-elsbetiae_contig6846:4065..41421622816757.7854304-CDS-L-elsbetiae_contig6846:4065..4142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 4066..4142 +
1691683790.8204296-CDS-L-elsbetiae_contig6846:4065..41421691683790.8204296-CDS-L-elsbetiae_contig6846:4065..4142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6846 4066..4142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6846.15602.1prot_L-elsbetiae_contig6846.15602.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6846 1132..4142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6846.15602.1

>prot_L-elsbetiae_contig6846.15602.1 ID=prot_L-elsbetiae_contig6846.15602.1|Name=mRNA_L-elsbetiae_contig6846.15602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=321bp
RSRASWSTDASFPDGADSRKVPTAHFILVPRSVDPTVTCFSNQFPPKTNV
PPLYRLSFPPAPHNPQSPCSHTKSSAPISLSERKQKTPVATMVFGFGGSD
SEDEDMKKAKQEARAEALEAKKKAQAARRQRLGKKEGDPDTASEGEEEGK
RPGRRPGARPGAEKEEDSEGDDEDKKAGRRPGGRRPGSKDDDPETDEEAK
KRPGRPAGRRPGKKDDEPDTDEDEAAGAGRPGRPGRHGKEDDEEAAAGAG
RPGRPGRHGKEEEDEAETGAGRPGRPGRHGKEEEEEEEPARPGHAGAGRP
GRHGKEEEEEEPARPGHAGK*
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mRNA from alignment at L-elsbetiae_contig6846:1132..4142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6846.15602.1 ID=mRNA_L-elsbetiae_contig6846.15602.1|Name=mRNA_L-elsbetiae_contig6846.15602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3011bp|location=Sequence derived from alignment at L-elsbetiae_contig6846:1132..4142+ (Laminarionema elsbetiae ELsaHSoW15)
CGATCACGAGCGAGTTGGAGCACAGACGCGTCGTTTCCGGACGGGGCCGA
TTCACGGAAAGTCCCAACGGCGCATTTTATTCTCGTTCCGCGTTCCGTGG
ACCCTACAGTGACATGCTTCTCAAATCAGTTCCCGCCAAAAACAAATGTT
CCCCCGCTCTACCGGCTCTCCTTCCCCCCTGCTCCACACAACCCACAATC
CCCCTGCTCCCACACAAAAAGCAGCGCTCCCATCTCCCTTTCCGAGAGAA
AACAAAAGACACCCGTAGCAACCATGGTGTTCGGTTTTGGAGGATCAGAC
TCAGAGGACGAGGACATGAAGAAGGCGAAGCAGGAGGCCAGGGCCGAGGC
TCTCGAGGCGAAGAAGAAAGCTCAGGCCGCCCGACGCCAGCGCCTGGGCA
AGAAGGAGGGTGACCCCGACACCGCATCCGAGGGAGAGGAAGAGGGCAAG
AGGCCAGGTGAGGCGCCTGTTGCGTAAGCGATTAATCGCCTTGGTTTGTC
GCAGGTGGATGGATGTCCGCGTGTCTACATGCGGCGATGCTCGTGCCGTT
GATGATGTAAATAAATATGCGAACACAAGATTTTCGAATTTTTTACACAT
ATCCCCGCATAACCCCTCATGTGTGTGTCTCCTCAGGCCGCCGCCCGGGG
GCTCGCCCCGGTGCGGAGAAGGAGGAGGACTCCGAAGGCGACGACGAAGA
CAAGAAGGCTGGCCGTCGCCCTGGAGGACGCAGGCCGGGAAGCAAGGACG
ACGATCCCGAGACGGACGAAGAGGCGAAGAAGCGGCCAGGTGTGTGTATG
TGCGAAGAGAGAAAATCCGCCGACCATCATCTGGCCAGGTGTCCCGACCA
TCTGGCTCTTTTGCTGCTGCATTCATGCATGCACCCTGACCGTGTTTTGA
GAAGGACGGCAAGATACATACATACGAGGTCAAGAAGATGCCATGCCGCC
GCTGTCGTATCGCTCGGAGCGCTGCCACTACATGCTGTAGCGTTGGCCAA
CAGCTGTTGCATCCCGCTGGCTCATTCAACACATCCCCGTCTGGAGACAA
ATAATAATGCACCGCCCCCGCACCTCCCTTCGCTCATATGCATGTTTGCC
GCTGCCCGTCGAATCCCGCTCCTCTGCGCGTAAACTACTGCTGACTCTTC
AGGGCGCCCTGCAGGACGCAGGCCCGGCAAGAAGGACGACGAGCCGGACA
CGGACGAAGACGAAGCAGCAGGTATATATTTTCGTGGAGAACAAAAAAGA
TGCGGCAAGTAGTCTGGAGCAGTTCTTGTTTTTCCTTTTTCGCGCTCGCT
CGCTCCCTCGCTCCCTTTATATATCTCTCATACACACGGTTGTTCTCTTC
AATCCTGAACCCCCGTTCGTAAAATCTCCAGGCGCTGGTCGCCCAGGACG
TCCGGGACGCCACGGCAAGGAGGACGACGAGGAAGCAGCGGCAGGTGAAA
AAGCATGACCAAATAATACCATATATTTTTAGCGCGCCAGCCACACAACA
AACCAGCTGTCTTGCTGGGTTCTTTTTTTTTCGGTCTCTTGCTCGCGCTG
CCGCACCTCACCTCCCTCCTATGATGCACCAGGCTGGCTGGCCTTACCGC
CCCGATCTCTCTACGCAGAACGCTTACCTGTTCGTACCTTCCTGATTCAG
CACTCGACGCGGTCAATTCCCGTGGGTCACACGCTCTTTTTCCATAGATA
TTTTACTGACAACGCGGGAAACATGGGCCGGAAATGTTCAGCAACAAAAA
CACTGCGACGAAAAGAGCAGGAGACCCCGAACCTGCCCATTTATTGCCTG
CGTCCCAAACGAGGTTAATCCGGTCATCGCGTGCCGGGATAATTATTAAT
ATATTAGGGATCAGCTCCGACGGAGCTCGAATCGGCTCCGCCTCTCTGAT
CCAAGAGAGAGGCAAAAAGCACGCACGCCCCTTTGTCTGCCTCGACGTGT
GCCCTGCGTTCATTCTCCCGCACCCCATACCCTGGCGCACTCTCGGGACC
TGGTTGCCCATTGTATATACTTTTCGATCGCGCTCTCTTTCTCAACCGCA
CATGCCGCGTCAAATCACTGCCGTACTACTTACTGCCTCGTCAATTCATA
AGGACGAAGAAGCCAAGACACGTATTGACAGTACGTGTCTTCTACATACA
TTCGTCTACTTTCTAAAAACTGCAGGGGGTGTTTGGACTCAATTGTTGCA
CCAGGAATGCTTTCACAGATCCAACCAAGGAGCGGGTGGGTAGGGTTGGT
GGCCCGAATCTACCGCGGGAGTCTCTTCCCACCTCTCTCGTACGCTCTCT
CTTTTTCTTTTCCCAACCACGTTGCCCCCCCGACCGCGGTGGCTTACCGC
CCTGAACCGCCCTTCTTCCCCCGTAACACCTCCTCTCCTTGCGACCTCTA
GGCGCTGGACGCCCCGGGCGCCCCGGACGTCATGGCAAGGAGGAGGAGGA
CGAGGCTGAGACAGGTGAAAACCAAAGTCCGCACGTGAATGTGTTCATCT
TGGAGCTTCTCTCTTCTCAAGGAGCTTCTCTCTTCTCAACCGCGTTGTAC
CCTCTCTTTTCTCAAATGATTTTACCCTCGACCGCCGTGGCTGCCGCCCT
GAACCATATTTTCGCCCCCGTTACCCCCCCTGCCCCTGCGACCTCTAGGC
GCCGGACGCCCCGGGCGCCCCGGACGCCACGGCAAGGAGGAGGAGGAGGA
GGAAGAGCCCGCCCGTCCCGGACACGCCGGTAAGTAGAGTCGGTCGCCCC
AATATACCGCGGGGGTCTCTCTGGACCTTCTCGTACGCCCACACTCTTGG
GTATGACAAGAGCTCGGCACAACTTGGCTTGAGTAGAGAGAAAGAATCGT
TGTCCCCTCGATCGCCGTTGGCCGCCGTCCTAACCACCCTGCGGCTCCAT
TAACCGCCCCCCCCCCTACCCTCGCCACCCCCAGGCGCCGGACGCCCCGG
ACGCCACGGCAAGGAGGAGGAGGAGGAAGAGCCCGCCCGTCCCGGACACG
CCGGTAAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6846:1132..4142+

>mRNA_L-elsbetiae_contig6846.15602.1 ID=mRNA_L-elsbetiae_contig6846.15602.1|Name=mRNA_L-elsbetiae_contig6846.15602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1926bp|location=Sequence derived from alignment at L-elsbetiae_contig6846:1132..4142+ (Laminarionema elsbetiae ELsaHSoW15)
CGATCACGAGCGAGTTGGAGCACAGACGCGTCGTTTCCGGACGGGGCCGA
TTCACGGAAAGTCCCAACGGCGCATTTTATTCTCGTTCCGCGTTCCGTGG
ACCCTACAGTGACATGCTTCTCAAATCAGTTCCCGCCAAAAACAAATGTT
CCCCCGCTCTACCGGCTCTCCTTCCCCCCTGCTCCACACAACCCACAATC
CCCCTGCTCCCACACAAAAAGCAGCGCTCCCATCTCCCTTTCCGAGAGAA
AACAAAAGACACCCGTAGCAACCATGGTGTTCGGTTTTGGAGGATCAGAC
TCAGAGGACGAGGACATGAAGAAGGCGAAGCAGGAGGCCAGGGCCGAGGC
TCTCGAGGCGAAGAAGAAAGCTCAGGCCGCCCGACGCCAGCGCCTGGGCA
AGAAGGAGGGTGACCCCGACACCGCATCCGAGGGAGAGGAAGAGGGCAAG
AGGCCAGCGATCACGAGCGAGTTGGAGCACAGACGCGTCGTTTCCGGACG
GGGCCGATTCACGGAAAGTCCCAACGGCGCATTTTATTCTCGTTCCGCGT
TCCGTGGACCCTACAGTGACATGCTTCTCAAATCAGTTCCCGCCAAAAAC
AAATGTTCCCCCGCTCTACCGGCTCTCCTTCCCCCCTGCTCCACACAACC
CACAATCCCCCTGCTCCCACACAAAAAGCAGCGCTCCCATCTCCCTTTCC
GAGAGAAAACAAAAGACACCCGTAGCAACCATGGTGTTCGGTTTTGGAGG
ATCAGACTCAGAGGACGAGGACATGAAGAAGGCGAAGCAGGAGGCCAGGG
CCGAGGCTCTCGAGGCGAAGAAGAAAGCTCAGGCCGCCCGACGCCAGCGC
CTGGGCAAGAAGGAGGGTGACCCCGACACCGCATCCGAGGGAGAGGAAGA
GGGCAAGAGGCCAGGCCGCCGCCCGGGGGCTCGCCCCGGTGCGGAGAAGG
AGGAGGACTCCGAAGGCGACGACGAAGACAAGAAGGCTGGCCGTCGCCCT
GGAGGACGCAGGCCGGGAAGCAAGGACGACGATCCCGAGACGGACGAAGA
GGCGAAGAAGCGGCCAGGCCGCCGCCCGGGGGCTCGCCCCGGTGCGGAGA
AGGAGGAGGACTCCGAAGGCGACGACGAAGACAAGAAGGCTGGCCGTCGC
CCTGGAGGACGCAGGCCGGGAAGCAAGGACGACGATCCCGAGACGGACGA
AGAGGCGAAGAAGCGGCCAGGGCGCCCTGCAGGACGCAGGCCCGGCAAGA
AGGACGACGAGCCGGACACGGACGAAGACGAAGCAGCAGGGCGCCCTGCA
GGACGCAGGCCCGGCAAGAAGGACGACGAGCCGGACACGGACGAAGACGA
AGCAGCAGGCGCTGGTCGCCCAGGACGTCCGGGACGCCACGGCAAGGAGG
ACGACGAGGAAGCAGCGGCAGGCGCTGGTCGCCCAGGACGTCCGGGACGC
CACGGCAAGGAGGACGACGAGGAAGCAGCGGCAGGCGCTGGACGCCCCGG
GCGCCCCGGACGTCATGGCAAGGAGGAGGAGGACGAGGCTGAGACAGGCG
CTGGACGCCCCGGGCGCCCCGGACGTCATGGCAAGGAGGAGGAGGACGAG
GCTGAGACAGGCGCCGGACGCCCCGGGCGCCCCGGACGCCACGGCAAGGA
GGAGGAGGAGGAGGAAGAGCCCGCCCGTCCCGGACACGCCGGCGCCGGAC
GCCCCGGGCGCCCCGGACGCCACGGCAAGGAGGAGGAGGAGGAGGAAGAG
CCCGCCCGTCCCGGACACGCCGGCGCCGGACGCCCCGGACGCCACGGCAA
GGAGGAGGAGGAGGAAGAGCCCGCCCGTCCCGGACACGCCGGTAAGTAGG
CGCCGGACGCCCCGGACGCCACGGCAAGGAGGAGGAGGAGGAAGAGCCCG
CCCGTCCCGGACACGCCGGTAAGTAG
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