mRNA_L-elsbetiae_contig6835.15596.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6835.15596.1
Unique NamemRNA_L-elsbetiae_contig6835.15596.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6835.15596.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.990e-15
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    4 PNTRSSKARISSRVPAVRALRLTWVLPIEVLVQGTAIELWESLNTVRLWGSV--DSLKSVVWPPNLKQLFLGHSFNRPI 234
            PNT+SSK R+ SRVP VRALRLTW   +E LVQ  AIELW     + + G +   SL SVVWP  L QL L   F+ P+
Sbjct:   74 PNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGLTQLVLDTDFHIPM 152
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BLAST of mRNA_L-elsbetiae_contig6835.15596.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.270e-12
Identity = 46/86 (53.49%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 RPNTRSSKARISSRVPAVRALRLTWVLPIEVLVQGTAIELWESLNTVRLWGS--VDSLKS-VVWPPNLKQLFLGHSFNRPIAGVVW 249
            RPNTRS    ISSRVP VRALRLTW L +E L++  AIELW     + L GS  V SL S VVWP  L QL L ++ +    G VW
Sbjct:   75 RPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVL-YTDSDIAMGTVW 159
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BLAST of mRNA_L-elsbetiae_contig6835.15596.1 vs. uniprot
Match: A0A6H5KXY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXY5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 7.060e-6
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   19 SKARISSRVPAVRALRLTWVLPIEVLVQGTAIELW-ESLNTVRLWGSVDSLK--------SVVWPPNLKQLFLGHSFNRPIA 237
            +K  ISSRVP VRA RLT  L +E L++  A+ELW  S    RL   V S           VVWP +L+QL LG  F +PIA
Sbjct:  202 TKVLISSRVPVVRAHRLTRALSMEPLLRRAAVELWCRSAYRRRLVAGVPSTAFVRVLLQAEVVWPASLQQLSLGREF-QPIA 282
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6835.15596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7F9_ECTSI1.990e-1553.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LIJ3_9PHAE2.270e-1253.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXY5_9PHAE7.060e-646.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6835contigL-elsbetiae_contig6835:2747..3011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size266
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.1351788-CDS-L-elsbetiae_contig6835:2746..30101622816757.1351788-CDS-L-elsbetiae_contig6835:2746..3010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6835 2747..3010 +
1691683790.3106592-CDS-L-elsbetiae_contig6835:2746..30101691683790.3106592-CDS-L-elsbetiae_contig6835:2746..3010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6835 2747..3010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6835.15596.1prot_L-elsbetiae_contig6835.15596.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6835 2747..3010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6835.15596.1

>prot_L-elsbetiae_contig6835.15596.1 ID=prot_L-elsbetiae_contig6835.15596.1|Name=mRNA_L-elsbetiae_contig6835.15596.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
RPNTRSSKARISSRVPAVRALRLTWVLPIEVLVQGTAIELWESLNTVRLW
GSVDSLKSVVWPPNLKQLFLGHSFNRPIAGVVWPASLQ
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mRNA from alignment at L-elsbetiae_contig6835:2747..3011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6835.15596.1 ID=mRNA_L-elsbetiae_contig6835.15596.1|Name=mRNA_L-elsbetiae_contig6835.15596.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=265bp|location=Sequence derived from alignment at L-elsbetiae_contig6835:2747..3011+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCCGAATACACGCAGCTCCAAGGCTCGCATTTCAAGCCGCGTTCCGGC
CGTGCGGGCTCTTCGTTTGACGTGGGTGCTTCCGATAGAGGTTTTGGTGC
AGGGTACCGCGATCGAGTTGTGGGAATCGTTGAACACTGTGCGACTGTGG
GGGTCTGTCGATAGCCTAAAATCGGTAGTTTGGCCCCCAAACCTGAAGCA
GCTATTCCTCGGGCATAGTTTCAACCGGCCGATCGCCGGAGTTGTGTGGC
CGGCCTCTCTGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6835:2747..3011+

>mRNA_L-elsbetiae_contig6835.15596.1 ID=mRNA_L-elsbetiae_contig6835.15596.1|Name=mRNA_L-elsbetiae_contig6835.15596.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig6835:2747..3011+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCCGAATACACGCAGCTCCAAGGCTCGCATTTCAAGCCGCGTTCCGGC
CGTGCGGGCTCTTCGTTTGACGTGGGTGCTTCCGATAGAGGTTTTGGTGC
AGGGTACCGCGATCGAGTTGTGGGAATCGTTGAACACTGTGCGACTGTGG
GGGTCTGTCGATAGCCTAAAATCGGTAGTTTGGCCCCCAAACCTGAAGCA
GCTATTCCTCGGGCATAGTTTCAACCGGCCGATCGCCGGAGTTGTGTGGC
CGGCCTCTCTGCAGCGGCCGAATACACGCAGCTCCAAGGCTCGCATTTCA
AGCCGCGTTCCGGCCGTGCGGGCTCTTCGTTTGACGTGGGTGCTTCCGAT
AGAGGTTTTGGTGCAGGGTACCGCGATCGAGTTGTGGGAATCGTTGAACA
CTGTGCGACTGTGGGGGTCTGTCGATAGCCTAAAATCGGTAGTTTGGCCC
CCAAACCTGAAGCAGCTATTCCTCGGGCATAGTTTCAACCGGCCGATCGC
CGGAGTTGTGTGGCCGGCCTCTCTGCAG
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