mRNA_L-elsbetiae_contig6834.15595.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6834.15595.1
Unique NamemRNA_L-elsbetiae_contig6834.15595.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Match: D8LAW9_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW9_ECTSI)

HSP 1 Score: 421 bits (1081), Expect = 1.050e-138
Identity = 250/321 (77.88%), Postives = 267/321 (83.18%), Query Frame = 2 
Query:  212 NPLAALVGAGDELRARARRMLPARGRGIQ-HEA-TTRKGQGLGRRS--SLAFGNFLARNSEREEPAGEAEVLGAEMLALQAENDASVEAILSVIESDGWEYVTTKSDVVXXXXXXXXXXXXXXXXXXX-----DEGAAAKFACVKAMGTLDADARDLYKLFLDNERVHEYNDNCKEVRDLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRPVEHPAARRGKKFVRAEILIATNIMRPNRDDPTKTDFVSVTHINPGGIADSKIGAKIVNKLCAKAPVNLLVALERAANSPPVPKPPAAAERAAKVAG 1147
            +P A L G GD LRARARR+L A   G Q H+A   R+ QG GRR   SLAFGNF AR    +E  GE  V+ AEMLALQAENDASVEA+L+VIESDGWE VT KS VV      XXXXXXXXXXXXX     DEGAAAKFACVKAMGTLDA A DLYKLFLDNERVHEYNDNCKEVRDLE+LS DTKVSWA TPRY PFKARDFVTAVHYRTLEDGTMMV+NRPVEHPAARRGKK+VRAEILIATNIMRPNR+DP+KTDF+SVTHINPGGIADS+IGAKIVNKLCAKAPVNLLVALER+ANS PVPK  AAA +  KVAG
Sbjct:  171 SPFAKLAGVGDGLRARARRLLVAEVEGRQKHDAGVPRRRQGFGRRGRESLAFGNFGARKQWVKEEEGE--VISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXRGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVAG 489
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BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Match: A0A6H5JSI0_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI0_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 6.380e-114
Identity = 221/321 (68.85%), Postives = 240/321 (74.77%), Query Frame = 2 
Query:  212 NPLAALVGAGDELRARARRMLPARGRGIQ-HEA-TTRKGQGLGRRS--SLAFGNFLARNSEREEPAGEAEVLGAEMLALQAENDASVEAILSVIESDG-----WEYVTTKSDVVXXXXXXXXXXXXXXXXXXXDEGAAAKFACVKAMGTLDADARDLYKLFLDNERVHEYNDNCKEVRDLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRPVEHPAARRGKKFVRAEILIATNIMRPNRDDPTKTDFVSVTHINPGGIADSKIGAKIVNKLCAKAPVNLLVALERAANSPPVPKPPAAAERAAKVAG 1147
            +P A L G GD LRARARR+L A   G Q H+A   R+ QG GRRS  SLAFGNF AR    +E   E EV+ AEMLA      A      S    DG         ++  +           XXXXXXXXXX E AAAKFACVKAMGTLDA A DLYKLFLDNERVHEYNDNCKEVRDLE+LS DTKVSWA TPRY PFKARDFVTAVHYRTLEDGTMMV+NRPVEHPAARRGKK+VRAEILIATNIMRPNR+DP+KTDF+SVTHINPGGIADS+IGAKIVNKLCAKAPVNLLVALER+ANS PVP+   AA +   VAG
Sbjct:  108 SPFAKLAGVGDGLRARARRLLVAEMEGRQKHDAGAPRRRQGFGRRSRESLAFGNFGARKQWVKEE--EEEVISAEMLARTMR--AWTRCWPSSSPMDGNMLPKSPASSSSGNSSHPLPRHAPSXXXXXXXXXXXEEAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPREEVAAAKKKNVAG 424
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BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Match: A0A835YQ35_9STRA (START domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ35_9STRA)

HSP 1 Score: 217 bits (552), Expect = 2.540e-64
Identity = 105/158 (66.46%), Postives = 125/158 (79.11%), Query Frame = 2 
Query:  620 AMGTLDADARDLYKLFLDNERVHEYNDNCKEVRDLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRPVEHPAARRGKKFVRAEILIATNIMRPNRDDPTKTDFVSVTHINPGGIADSKIGAKIVNKLCAKAPVNLLVALERAANS 1093
            A GTL A A DL+ LF  N+RVHEYNDNC +VRDLE +S  +K++WA +PR+GPFKARDFVT V Y TL DGT+ V+NRPV H AA   K +VRAEILIATN+MR N  DP KTDFV+V H+NPGG+ADS +GA +VN LCA+AP+ LL ALERAANS
Sbjct:    2 ARGTLAAHAEDLFALFQSNDRVHEYNDNCADVRDLEVVSQHSKITWARSPRFGPFKARDFVTVVSYTTLADGTLAVVNRPVNHAAAPATKDYVRAEILIATNMMRANAHDPRKTDFVTVAHVNPGGVADSTLGANVVNMLCAQAPLKLLQALERAANS 159
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BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Match: A0A7S2RES9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES9_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.200e-59
Identity = 102/219 (46.58%), Postives = 148/219 (67.58%), Query Frame = 2 
Query:  446 NDASVEAILSVIESDGWEYVTTKSDVVXXXXXXXXXXXXXXXXXXX-DEGAAAKFACVKAMGTLDADARDLYKLFLDNERVHEYNDNCKEVRDLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRPVEHPAARRGKKFVRAEILIATNIMRPNRDDPTKTDFVSVTHINPGGIADSKIGAKIVNKLCAKAPVNLLVALERAANSPP 1099
            N A+V+++L+V+   GW  V++ +D                      D+ AAAKF+CVKA   L+A   D+YKLFLDN +VHEYN++C+++ D+E++S DTKV+W+ T  +GPFK RDFVT VHYR   DGT+MV+NRP  HP      +F RAE+L+A N+MRP + D +KT+F  +TH+NPGG+ ++ +GA IVN++C++ PV+ +  LERAA S P
Sbjct:   82 NQANVDSMLAVVRGAGWRQVSSTNDHNRIRVYLKSVTPGTHLETEAADDVAAAKFSCVKATAILNASPHDVYKLFLDNSQVHEYNEHCQKLEDVERVSKDTKVAWSVTAPFGPFKPRDFVTMVHYRREPDGTLMVLNRPCNHPDRPPVPQFQRAELLLAGNVMRPVQGDKSKTEFTMITHVNPGGVVNNALGAAIVNRICSQGPVDFIRRLERAAQSHP 300
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BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Match: A0A7S3UPT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPT8_HETAK)

HSP 1 Score: 190 bits (483), Expect = 2.970e-51
Identity = 95/173 (54.91%), Postives = 126/173 (72.83%), Query Frame = 2 
Query:  587 EGAAAKFACVKAMGTLDADARDLYKLFLDNERVHEYNDNCKEVRDLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRPVEHPAARRGK-KFVRAEILIATNIMRPNRDDP-TKTDFVSVTHINPGGIADSKIGAKIVNKLCAKAPVNLLVALERAANSPP 1099
            E  AAKFA VKA GT++A A  +Y+LFLDN RVHEYN  C +V+DL  LS DTKV+WA +PR+GP KARDF T VH R L DGT +V+NRP  H  A R   +++R+E+LIA ++MRPNR DP  KTDF  +TH+N GGI ++   A ++N+LCA +P++L+  LE+AA+  P
Sbjct:  217 EERAAKFAAVKAAGTINAPASSIYRLFLDNSRVHEYNSLCHKVKDLAYLSEDTKVTWACSPRFGPVKARDFCTVVHCRRLRDGTCVVVNRPAFHRGALRSDPQYIRSELLIAGHVMRPNRKDPENKTDFYVMTHVNLGGICETPPVAALINRLCASSPISLMKNLEKAASHQP 389
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BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Match: I2CRQ3_NANGC (Lipid transfer protein 5-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRQ3_NANGC)

HSP 1 Score: 181 bits (460), Expect = 7.730e-51
Identity = 84/144 (58.33%), Postives = 112/144 (77.78%), Query Frame = 2 
Query:  602 KFACVKAMGTLDADARDLYKLFLDNERVHEYNDNCKEVRDLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRPVEHPAARRGKKFVRAEILIATNIMRPNRDDPTKTDFVSVTHINPGGIADSKIGAKIVN 1033
            +FACVKA+G +DA    ++ LFLD+ RV EYN++C+E++D++ LS +TKV+W+++ RYGPFKARDF T VHYR LEDG ++V+NR  EH  A R  K+VR+EIL+A NIMRP+  DP KT  V++THINPGG  DSK GA +VN
Sbjct:   16 RFACVKAVGVVDAPVDRVFDLFLDSARVGEYNEHCREIQDIDTLSANTKVTWSASGRYGPFKARDFCTVVHYRRLEDGRLVVVNRAAEHVRAPRSDKYVRSEILLAGNIMRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVN 159
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BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Match: D8LLJ0_ECTSI (START domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ0_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.520e-49
Identity = 89/162 (54.94%), Postives = 120/162 (74.07%), Query Frame = 2 
Query:  602 KFACVKAMGTLDADARDLYKLFLDNERVHEYNDNCKEVRDLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRPVEHPAARRGKKFVRAEILIATNIMRPNRDDPTKTDFVSVTHINPGGIADSKIGAKIVNKLCAKAPVNLLVALERAA 1087
            +FACVKA   L      +Y LF DN RV EYN++C+EV+DLE LS D+K++WA++ R GPFKARDF T VH+RTL DGT+  +++PVEHPAA R  ++VR+EIL+A N MRP   DP++T+F+ VTH+NPGG A+++ GA +VN LC  +PV  +  LE AA
Sbjct:  400 QFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAA 561
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BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Match: A0A6H5J623_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J623_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 3.190e-49
Identity = 89/162 (54.94%), Postives = 120/162 (74.07%), Query Frame = 2 
Query:  602 KFACVKAMGTLDADARDLYKLFLDNERVHEYNDNCKEVRDLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRPVEHPAARRGKKFVRAEILIATNIMRPNRDDPTKTDFVSVTHINPGGIADSKIGAKIVNKLCAKAPVNLLVALERAA 1087
            +FACVKA   L      +Y LF DN RV EYN++C+EV+DLE LS D+K++WA++ R GPFKARDF T VH+RTL DGT+  +++PVEHPAA R  ++VR+EIL+A N MRP   DP++T+F+ VTH+NPGG A+++ GA +VN LC  +PV  +  LE AA
Sbjct:  366 QFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAA 527
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BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Match: A0A6U4ZLH7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4ZLH7_HEMAN)

HSP 1 Score: 177 bits (449), Expect = 4.730e-48
Identity = 81/165 (49.09%), Postives = 114/165 (69.09%), Query Frame = 2 
Query:  590 GAAAKFACVKAMGTLDADARDLYKLFLDNERVHEYNDNCKEVRDLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRPVEHPAARRGKKFVRAEILIATNIMRPNRDDPTKTDFVSVTHINPGGIADSKIGAKIVNKLCAKAPVNLLVALERA 1084
            G A+KF CVKA   LDA    +Y LF+DN RV EYN+ CK++RDLE  +  TKV+W+++ R GPFK RDFVT VHYRTL D T++V+NR  +HPAA +  +++R EI++  N+M+P   DP KT F  +TH+NPGG+A +++G  I+N   A  P++ +  L  A
Sbjct:   33 GEASKFLCVKAEAVLDASPAQVYTLFVDNTRVREYNEFCKQIRDLEYKNSTTKVTWSASARIGPFKERDFVTRVHYRTLPDQTLLVVNRAEDHPAAPQTDRYLRMEIVLGGNVMKPVPSDPEKTMFTMLTHVNPGGVAGTRMGTMIMNSAAANGPISFVQGLRDA 197
[Close]
BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Match: A0A7S1HKH9_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1HKH9_HEMAN)

HSP 1 Score: 174 bits (440), Expect = 7.640e-47
Identity = 87/221 (39.37%), Postives = 133/221 (60.18%), Query Frame = 2 
Query:  431 ALQAENDASVEAILSVIESDGWEYVTTKSDVVXXXXXXXXXXXXXXXXXXXDEGAAAKFACVKAMGTLDADARDLYKLFLDNERVHEYNDNCKEVRDLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRP--VEHPAARRGKKFVRAEILIATNIMRPNRDDPTKTDFVSVTHINPGGIADSKIGAKIVNKLCAKAPVNLLVALERAA 1087
            A+Q  N+  +  + +V+  D WE+V     V                    D     KF C+KA+ T++A   D+Y L  D +RV EYND C    +L  LS DT+++WA + +YGPFKARDF+T VH+R + DGT++V+++   +E   ++ G  +VR E+L+A N+MRP+  DPTKT+F ++ H+NPGG AD+ +G+++VN +C   PVN +  LE AA
Sbjct:   21 AVQTHNNELIGRLFNVMGGDDWEHVLCLGGV------------NVYRKRITDVPGGEKFYCIKAVRTINARPIDVYDLLKDPQRVSEYNDECALTEELPPLSDDTRLTWACSKKYGPFKARDFITRVHHRKMTDGTLVVMSQSEDIEWERSQPGTDYVRTEVLLAGNVMRPDPTDPTKTEFTTIAHVNPGGAADTPLGSRLVNHICTHGPVNFINKLEIAA 229
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6834.15595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAW9_ECTSI1.050e-13877.88START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JSI0_9PHAE6.380e-11468.85START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YQ35_9STRA2.540e-6466.46START domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S2RES9_9STRA2.200e-5946.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3UPT8_HETAK2.970e-5154.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
I2CRQ3_NANGC7.730e-5158.33Lipid transfer protein 5-like protein (Fragment) n... [more]
D8LLJ0_ECTSI1.520e-4954.94START domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5J623_9PHAE3.190e-4954.94START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6U4ZLH7_HEMAN4.730e-4849.09Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1HKH9_HEMAN7.640e-4739.37Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6834contigL-elsbetiae_contig6834:4862..9809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue9.1e-31
Seed eggNOG ortholog2880.D7G2E9
KEGG koko:K10779
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Ec32 ortholog descriptionSTART domain
Ec32 orthologEc-27_006150.1
Exons5
Model size1749
Cds size882
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.0282226-UTR-L-elsbetiae_contig6834:4861..54601622816757.0282226-UTR-L-elsbetiae_contig6834:4861..5460Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6834 4862..5460 -
1691683790.228908-UTR-L-elsbetiae_contig6834:4861..54601691683790.228908-UTR-L-elsbetiae_contig6834:4861..5460Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6834 4862..5460 -
1622816757.0947285-UTR-L-elsbetiae_contig6834:9541..98091622816757.0947285-UTR-L-elsbetiae_contig6834:9541..9809Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6834 9542..9809 -
1691683790.297731-UTR-L-elsbetiae_contig6834:9541..98091691683790.297731-UTR-L-elsbetiae_contig6834:9541..9809Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6834 9542..9809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.038406-CDS-L-elsbetiae_contig6834:5460..57311622816757.038406-CDS-L-elsbetiae_contig6834:5460..5731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6834 5461..5731 -
1691683790.2420936-CDS-L-elsbetiae_contig6834:5460..57311691683790.2420936-CDS-L-elsbetiae_contig6834:5460..5731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6834 5461..5731 -
1622816757.0475802-CDS-L-elsbetiae_contig6834:6147..63381622816757.0475802-CDS-L-elsbetiae_contig6834:6147..6338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6834 6148..6338 -
1691683790.2528253-CDS-L-elsbetiae_contig6834:6147..63381691683790.2528253-CDS-L-elsbetiae_contig6834:6147..6338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6834 6148..6338 -
1622816757.0573928-CDS-L-elsbetiae_contig6834:6956..70851622816757.0573928-CDS-L-elsbetiae_contig6834:6956..7085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6834 6957..7085 -
1691683790.270904-CDS-L-elsbetiae_contig6834:6956..70851691683790.270904-CDS-L-elsbetiae_contig6834:6956..7085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6834 6957..7085 -
1622816757.0709789-CDS-L-elsbetiae_contig6834:8852..89781622816757.0709789-CDS-L-elsbetiae_contig6834:8852..8978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6834 8853..8978 -
1691683790.2799788-CDS-L-elsbetiae_contig6834:8852..89781691683790.2799788-CDS-L-elsbetiae_contig6834:8852..8978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6834 8853..8978 -
1622816757.0829918-CDS-L-elsbetiae_contig6834:9376..95411622816757.0829918-CDS-L-elsbetiae_contig6834:9376..9541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6834 9377..9541 -
1691683790.2890575-CDS-L-elsbetiae_contig6834:9376..95411691683790.2890575-CDS-L-elsbetiae_contig6834:9376..9541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6834 9377..9541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6834.15595.1prot_L-elsbetiae_contig6834.15595.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6834 5461..9541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6834.15595.1

>prot_L-elsbetiae_contig6834.15595.1 ID=prot_L-elsbetiae_contig6834.15595.1|Name=mRNA_L-elsbetiae_contig6834.15595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=294bp
MLPARGRGIQHEATTRKGQGLGRRSSLAFGNFLARNSEREEPAGEAEVLG
AEMLALQAENDASVEAILSVIESDGWEYVTTKSDVVVVRKFMPPPPKASS
GGGVVDEGAAAKFACVKAMGTLDADARDLYKLFLDNERVHEYNDNCKEVR
DLEQLSGDTKVSWASTPRYGPFKARDFVTAVHYRTLEDGTMMVINRPVEH
PAARRGKKFVRAEILIATNIMRPNRDDPTKTDFVSVTHINPGGIADSKIG
AKIVNKLCAKAPVNLLVALERAANSPPVPKPPAAAERAAKVAG*
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mRNA from alignment at L-elsbetiae_contig6834:4862..9809-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6834.15595.1 ID=mRNA_L-elsbetiae_contig6834.15595.1|Name=mRNA_L-elsbetiae_contig6834.15595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4948bp|location=Sequence derived from alignment at L-elsbetiae_contig6834:4862..9809- (Laminarionema elsbetiae ELsaHSoW15)
CGGCCGCGGCCTCGTGGAGGAGAACTCTCACGCCGGAAACGCAAACGCCC
CTCAGCACTCGGAAGCAGAGCACACCTCGGAACATCAGCCAAGGTTTCAA
AGGCGGCGGTCTGAGCGAATAAGGAGGCGCAAGCAGCAGCCACGGGAAAG
CAGCAGCAGCAGCAGCAACAGCAGGGGCGGTGGCAGCGGCAGCGGCGGCG
GGAGAGGCCCAAACCCCCTCGCTGCACTGGTCGGGGCGGGCGACGAACTC
AGGGCTCGCGCGCGACGGATGCTGCCGGCGCGGGGGCGTGGAATACAGCA
CGAGGCGACAACGAGAAAGGGACAGGGACTGGGCCGGCGGAGCTCCCTGG
CGTTCGGGAACTTTCTGGCGAGAAATTCGGAGCGGGAGGAACCGGCCGGG
GAGGCAGAGGTGCTCGGCGCGGAGATGCTGGCGGTGAGCCAGCCTGCCTC
ACCAGTTTTTTGTCATTGCTTTTTGTGGACTGGCTCTCTTGCGGAGTGCT
GAGAAACTAACTTGAATAAATACATGTTTCTCAAAAAAGTGTTAAAAACG
TCAGCGGTCTATTTACGTCCGCCCGACCTGTGACGAAATAATAGAAAAAA
TATTGTAAAGGGGTGGGGGACTGCCGTTTGTTGTGTTGTAGAGATTGTAC
GCAACCCCCCCCTTTTATTTCCGTCCGCCCCCCAGACTACGGCTTTTTGC
CAGACTAAGATGTTGGCGATGCTGGAGTCGCCGGGCAAGCATTTTTCCAC
CTCCTGCCACCCTGACATCCACCACCACCACCACCCCCCCCCCCCGACGC
GTGCTTGTTGCCCGTGTTTTTGCTTCTTCAGCTCCAGGCCGAGAACGACG
CAAGCGTGGAGGCCATCCTGTCCGTGATCGAGTCGGACGGGTGGGAGTAC
GTCACGACCAAGTCCGATGTTGTCGTCGTGAGGAAGTTCATGCCTCCTCC
CCCCAAGGTACGGAATATGTATGGCGCACGCAGGGTTGAGGTACGGAGGG
TGGTCTAGACGGCTACAAATAAACCTTGCATTGCTGCACGCCGATTTAAA
GGGGCGCCAGTCGGAAACACCCTTTCGGCTGCTGTGCGGTCCGGCGACGA
CACTATACATATAGATCTAAGGCGCTGCGGCCGTAGAGTTCTGCCTTTCC
TGTCTAATGACACCTGATTTGTGAAGTTCCTCCCCCTATGGCCCTCAAAC
CCGACGAAACAAACTTTCGCAGTTGTGCCGCAGATAGCTAGCGAAAAAAG
TGCGGCGCAACCCCCCGCCGGATGGCGCGTGTATTTCCCCCGAGCCCGAG
AACGCGTCGCCGACAGCACAGATCCGCTTGAAACTTTGCACATGGACTAT
TTACACTATTATGAGTTCGCACCCAAGGTGGTGCGTCGAAATACACACAG
CAGTAGTAGACGAGAGGGGCGTATTTCTCATAAAAGTCGCGTTCGCGCGA
CGGCGTAAGCTTAACTTCTCCCTCAACGGTTTAGGAAGGGTGCACTAGTA
TGTCAAAGAGGGTATTGTGAGGGTTTCTCAGCAATTCGAATTTTGCTGCA
ACACGCAGTATAGGCCGAGAACTCGCAATCGGCGCGAAGCAAGTTTTGAA
TTTGCGCGGATATCGTAAACACTTTTCGTTCGATACAAAAAACAAATCCG
GCGGAAAATGCTGTCAAGTCAAATATTGCTTCGCGCCGATTACGAGTTAT
CGGTCTATTCTGGGTATTGCAGCAAAATTCCAAGTGCTGAACGACCCTCA
TAACACCTGCTTCGATATACCAGTGCACCCTTCCTAAACCGTTGAGGGGG
AAGCTGAGCCTAAGCTGCCGCGCGAAGGCAACTTTTATGAGAAAATCGTC
CCTCCTCACTGCCGCTGCGTGTATTTCGACGCGCCACTCTCGGTGCTAGG
TCCTCATGATACATGTAGTCTACGTGCCAAATTTCGTAGCCATTGGTTTT
GTCTGCGACGCGTTCTCGTCATCGTTGAAAATCACGCGGAGGCATATAGA
GGTTGCCCCGCACAAAAGTTTGCCAGCTATATATTTTTTTTCTCTACACC
GAGCAGCACTGCTTGGCGGCCAGTCGTTGGAAAGCGCACGCAGTGCAAGG
AGAGGAAGGTAGTACTTCTATTTACTCAGTGCCTTTGCCTTGCAGTTAAT
ATGCGACAAGCTTGCTGCGGCACAGGCAGCATGGTGTACAGGCGGTAAAC
GCCAAGCCCCACACAACCATTACCGCCTTGTTTCAATATTTTGTCAAGGT
AAGCCTCACCTCCCTGTGATGTATTGCACGCATGTATGTGGGTAGGTAAA
TTTCCATTTTTCTTCCGGAGGCCCGCGGTTCTAAGATAAGTGTCCCCTCC
CTCTTCTATCTGTTATGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCACACACTTATTTTATTAAACTTTTCATCTACCCCCCACTCCCC
AACTCCAACCCCCCACCCCCCCCCTTTCCCNNNNNNNNNNCCCGCGGTTC
TAAGAAAAGGGCCCCCCCCCCCTTTTTCTTTTTTTGTCCCCCCCCCCCCC
CCCCACCCGGACCGCCTACGCAGAAATTAATTTTATACTACTAACTCTAA
CCCTAACCCTAACCCTAACCCCAACCACCGACCCCCCAAACGGTTTCCAT
ACTGTATCCCATATGTTAGCTTAAGACAAAAACCCCGCGTAGACTATTGC
CCCACCCTCACCTGTCTACGTCAGGCGTCCTCGGGCGGAGGGGTCGTGGA
TGAAGGAGCGGCCGCGAAGTTTGCGTGCGTGAAAGCCATGGGCACCCTTG
ACGCCGACGCTCGCGACCTTTACAAGCTCTTCCTCGACAACGAGCGCGTA
CACGTGGGTGCAAGCAGGGAGATTTTTTAGGCGGCTAGATGATGGCGGGT
CGTGACGGTCGGTAGATTTTTCCTCAAACAGGCCGCACGGGAGGTTCGCT
GGCTGGGCGGCACGCGCGAACCGTCACTGCACGGGTTTTTCTGTTGGTGT
ACAATAACCAAAACAACGATGAGTCCACACTTTTCTCTCGGCAGAGTTCG
TACGCATTTATGTCGCTGTTTCGGGGATTCCGAGTGTGTGTTTTTGCCTT
CTTGTCTGTCCACAGGCACGGAAGGTTAGGCACCAAATTACCTCTACTCG
CTACTCTACCGGGGGCCGCGCCGATCCGGTCTATTCTCGCCGCTCGTTGA
GAGCAAAACACATCAACTAGCTACTACTGCTGCTCTCATTCTACCTACTT
CTTTGTAACTGGAATCTCATTGATGCAAAACAACACTTTTGTCCCGCCCT
TGACGACAAGCCGGGCTTACTTATCTTCTACCGTATCCCCGGATTTCCAA
AGTGGACTCCCGTGTTTCCTGACAAAATCCGGACAAAATCCGGACAAAAT
CCGGTCAATGTTGGACTGAAATTATTCATTCCTGCTTTCGTGTGGCCATG
TCCATCGGTTGAATACGACAGGAATACAACGACAACTGCAAGGAGGTGAG
AGACCTCGAGCAGCTGTCGGGGGACACCAAGGTCTCCTGGGCGTCCACCC
CGCGCTATGGCCCCTTCAAGGCTCGCGACTTCGTCACGGCTGTCCACTAC
CGGACGCTAGAGGACGGGACGATGATGGTGATCAACCGACCCGTCGAACA
CCCGGCGGCGAGGTGAGTCGGCAGGCATGCAAGCACGCACGCACGCACGC
AACGGTGTTTGGGTGCCGGTACCAGAATCAAAGGGCGGTGGTGAACAGCT
GACTCAATCAAGGCTCTGATATTTATTTTCTTTGTCGAGAGGGAAAAGAG
ACGGACTCTCCCGGGAGATATGTATGCCCACACAATACCCATCTACCGAC
ACACGAACCTCCAAAGCCTTCACGCAACCCCCAAGGATCTCACCCAAGCA
GCACCGGAACGTGTACATACAAACGGGCACCGGAAGAGGATAAGGTAGAC
TGGGCCAGAATTGATGGGACGTAAAACAAAAAAGGACCAAACCCACCGAC
ATGAAAAAAAACACACCGCGCGCACGCAACACACACACACTAACACACAC
ACGCACACACACACACACACACACACAGGCGCGGGAAAAAGTTCGTCCGG
GCCGAGATCCTGATCGCCACCAACATCATGCGACCGAACCGCGACGATCC
CACCAAGACGGACTTCGTGTCGGTCACGCACATCAACCCCGGGGGCATCG
CGGACTCGAAGATCGGGGCCAAGATCGTCAACAAGCTCTGCGCCAAGGCG
CCGGTCAACCTGCTCGTCGCCCTGGAGCGCGCCGCGAACTCCCCGCCGGT
TCCGAAGCCGCCGGCGGCCGCCGAAAGGGCGGCGAAGGTGGCGGGGTAAT
TGTCGTCGCTTGGAAGTGCCTACCGTGGAAAACGCCCTCCCCAAGAATCA
AGAGCATGAAGGGACGGTTTTTGGAGGGGGCGATTTCGAAGGGCGGTTTG
CGGTCCTAGATTTCGGGAAAACTAACTGTCGATGTCGAGACTACCTACGA
CTGACTGACTGAGCCTTGACGCGAAAAATCCCGAGAATTTTGAAATATTT
AAGCAAGCTGTAAATATAAGTAAAATACCCAGAGCTCTGCGCGGGAGAGA
AGAGCGCGGGGGGCGTTTGTTTTTAGGTATCTATTTAGTTTGAGGTCGTT
GGGGCGCTGAGGTGCTGTTGAGATAGATTGCCCTGGGCCCAGGGCGCTTC
CAGTTTTGTTTTCGCTTTGAAGCACGGAGGTCGGGTTTGCCCAGACTAGA
AGACAGGCGCACACAGTAGTTAGGAGTGAGGTCGTTGCGGCGCTGAGGTG
CTGTACGGGGAATGTATATCCGTGTGTGCGTGAATGAGTGTACTGTACTA
CTGTTGTAGTATTCCTCTCGATCTTTTGCGGACCCTGTCCGTGTGGCTGG
AAAATCGTAGACGCACCTGCAAGGGACAGACAACATGCACACACGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6834:4862..9809-

>mRNA_L-elsbetiae_contig6834.15595.1 ID=mRNA_L-elsbetiae_contig6834.15595.1|Name=mRNA_L-elsbetiae_contig6834.15595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1764bp|location=Sequence derived from alignment at L-elsbetiae_contig6834:4862..9809- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCCGGCGCGGGGGCGTGGAATACAGCACGAGGCGACAACGAGAAA
GGGACAGGGACTGGGCCGGCGGAGCTCCCTGGCGTTCGGGAACTTTCTGG
CGAGAAATTCGGAGCGGGAGGAACCGGCCGGGGAGGCAGAGGTGCTCGGC
GCGGAGATGCTGGCGATGCTGCCGGCGCGGGGGCGTGGAATACAGCACGA
GGCGACAACGAGAAAGGGACAGGGACTGGGCCGGCGGAGCTCCCTGGCGT
TCGGGAACTTTCTGGCGAGAAATTCGGAGCGGGAGGAACCGGCCGGGGAG
GCAGAGGTGCTCGGCGCGGAGATGCTGGCGCTCCAGGCCGAGAACGACGC
AAGCGTGGAGGCCATCCTGTCCGTGATCGAGTCGGACGGGTGGGAGTACG
TCACGACCAAGTCCGATGTTGTCGTCGTGAGGAAGTTCATGCCTCCTCCC
CCCAAGCTCCAGGCCGAGAACGACGCAAGCGTGGAGGCCATCCTGTCCGT
GATCGAGTCGGACGGGTGGGAGTACGTCACGACCAAGTCCGATGTTGTCG
TCGTGAGGAAGTTCATGCCTCCTCCCCCCAAGGCGTCCTCGGGCGGAGGG
GTCGTGGATGAAGGAGCGGCCGCGAAGTTTGCGTGCGTGAAAGCCATGGG
CACCCTTGACGCCGACGCTCGCGACCTTTACAAGCTCTTCCTCGACAACG
AGCGCGTACACGCGTCCTCGGGCGGAGGGGTCGTGGATGAAGGAGCGGCC
GCGAAGTTTGCGTGCGTGAAAGCCATGGGCACCCTTGACGCCGACGCTCG
CGACCTTTACAAGCTCTTCCTCGACAACGAGCGCGTACACGAATACAACG
ACAACTGCAAGGAGGTGAGAGACCTCGAGCAGCTGTCGGGGGACACCAAG
GTCTCCTGGGCGTCCACCCCGCGCTATGGCCCCTTCAAGGCTCGCGACTT
CGTCACGGCTGTCCACTACCGGACGCTAGAGGACGGGACGATGATGGTGA
TCAACCGACCCGTCGAACACCCGGCGGCGAGGAATACAACGACAACTGCA
AGGAGGTGAGAGACCTCGAGCAGCTGTCGGGGGACACCAAGGTCTCCTGG
GCGTCCACCCCGCGCTATGGCCCCTTCAAGGCTCGCGACTTCGTCACGGC
TGTCCACTACCGGACGCTAGAGGACGGGACGATGATGGTGATCAACCGAC
CCGTCGAACACCCGGCGGCGAGGCGCGGGAAAAAGTTCGTCCGGGCCGAG
ATCCTGATCGCCACCAACATCATGCGACCGAACCGCGACGATCCCACCAA
GACGGACTTCGTGTCGGTCACGCACATCAACCCCGGGGGCATCGCGGACT
CGAAGATCGGGGCCAAGATCGTCAACAAGCTCTGCGCCAAGGCGCCGGTC
AACCTGCTCGTCGCCCTGGAGCGCGCCGCGAACTCCCCGCCGGTTCCGAA
GCCGCCGGCGGCCGCCGAAAGGGCGGCGAAGGTGGCGGGGTAAGCGCGGG
AAAAAGTTCGTCCGGGCCGAGATCCTGATCGCCACCAACATCATGCGACC
GAACCGCGACGATCCCACCAAGACGGACTTCGTGTCGGTCACGCACATCA
ACCCCGGGGGCATCGCGGACTCGAAGATCGGGGCCAAGATCGTCAACAAG
CTCTGCGCCAAGGCGCCGGTCAACCTGCTCGTCGCCCTGGAGCGCGCCGC
GAACTCCCCGCCGGTTCCGAAGCCGCCGGCGGCCGCCGAAAGGGCGGCGA
AGGTGGCGGGGTAA
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