mRNA_L-elsbetiae_contig6832.15593.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6832.15593.1
Unique NamemRNA_L-elsbetiae_contig6832.15593.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Match: D8LLK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK4_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.410e-40
Identity = 73/81 (90.12%), Postives = 80/81 (98.77%), Query Frame = 2 
Query:  170 QAEEDDDIGISDSQAAMLETKIDPVEWKRELERVGPRLKMAASAAGKEWRGHVEQTKKHEEAIQASLPVTTTQLALIGTEV 412
            +AEEDDD+G++DSQAAMLE K+DPVEWKRELERVGP+LKMAASAAGKEWRGHVEQTKKHEEAIQA+LPVTTTQLALIGTEV
Sbjct:  173 KAEEDDDMGVNDSQAAMLEAKVDPVEWKRELERVGPKLKMAASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEV 253
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BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Match: A0A6H5K333_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K333_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.050e-32
Identity = 71/113 (62.83%), Postives = 77/113 (68.14%), Query Frame = 2 
Query:  170 QAEEDDDIGISDSQAAMLETKIDPVEWKRELERVGPRLK---------------------------------MAASAAGKEWRGHVEQTKKHEEAIQASLPVTTTQLALIGTE 409
            +AEEDDD+ +SD QAAMLE K+DPVEWKRELERVGP+LK                                 MAASAAGKEWRGHVEQTKKHEEAIQA+LPVTTTQLALIGTE
Sbjct:   91 KAEEDDDMRVSDIQAAMLEAKVDPVEWKRELERVGPKLKVRQHPHQHREEIGQARRCCIALGATALVLACMQMAASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTE 203
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BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Match: A0A835YZP1_9STRA (Intra-flagellar transport protein 57-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.700e-18
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 2 
Query:  191 IGISDSQAAMLETKIDPVEWKRELERVGPRLKMAASAAGKEWRGHVEQTKKHEEAIQASLPVTTTQLALIGTEV 412
            +G S SQ  +LE KIDPVEW++ELERVGP+LK+  +  GKEWR HVEQTK  E  +   +P   TQL++I TEV
Sbjct:  170 LGTSTSQYQVLEGKIDPVEWQKELERVGPKLKLGQATLGKEWRSHVEQTKTLEAGLHTGMPEANTQLSVISTEV 243
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BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Match: A0A7S3XR66_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR66_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 3.420e-16
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 2 
Query:  191 IGISDSQAAMLETKIDPVEWKRELERVGPRLKM--AASAAGKEWRGHVEQTKKHEEAIQASLPVTTTQLALIGTEV 412
            I + +S   +LE ++DPV WK ELERV PRLK+  AA+ AG+EWRGH+EQTK+HE  ++  +P T  QL +I  EV
Sbjct:  195 IALDESHQRILEAQVDPVAWKTELERVAPRLKLPPAAAGAGREWRGHIEQTKQHEARVREHMPDTRAQLQVIQAEV 270
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BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Match: F0Y310_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y310_AURAN)

HSP 1 Score: 79.3 bits (194), Expect = 8.960e-15
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 2 
Query:  128 QAIEGPEYTHFWSGQAEEDDDIGISDSQAAMLETKIDPVEWKRELERVGPRLKMAASAAG-KEWRGHVEQTKKHEEAIQASLPVTTTQLALIGTEV 412
            +A+E  E     S  A+ ++D     +Q  +L++ IDP+ W+ ELERVGPRL++AA+AAG KEWR H+EQTK +EE I+  +P T  QL  +G  V
Sbjct:  152 EAVEEEETLFKESAPADVEEDDPAYKAQHEILKSGIDPLVWQTELERVGPRLRVAAAAAGGKEWRAHIEQTKLNEEKIREVMPATEKQLKAMGERV 247
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BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Match: A0A7S2WNS5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNS5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.160e-14
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  173 AEEDDDIGISDSQAAMLETKIDPVEWKRELERVGPRLKMAASAAGKEWRGHVEQTKKHEEAIQASLP 373
            AEE+D++ +  S   ++E  IDP+ WK ELERVGPRLK    + GKEWR H+EQTK HE+ IQA+LP
Sbjct:  197 AEEEDEV-LEQSTHQLIENTIDPLVWKTELERVGPRLKANVVSLGKEWRAHIEQTKDHEKTIQATLP 262
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BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Match: A0A2D4BPI7_PYTIN (Intraflagellar Transport Protein 57 (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPI7_PYTIN)

HSP 1 Score: 75.9 bits (185), Expect = 1.630e-13
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 2 
Query:  185 DDIGISDSQAAMLETKIDPVEWKRELERVGPRLKMAASAA-GKEWRGHVEQTKKHEEAIQASLPVTTTQLALIGT 406
            +D  + +S   M+ +++DP+ WK ELERVGPRLK+ A    GKEW  H+E+T+KHE  I+  LP + TQL L+GT
Sbjct:  201 EDNALEESYQQMIVSEVDPLLWKTELERVGPRLKVQAKDDDGKEWHAHIERTRKHETLIKELLPRSNTQLKLLGT 275
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BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Match: A0A2D4CD25_PYTIN (Intraflagellar Transport Protein 57 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD25_PYTIN)

HSP 1 Score: 75.9 bits (185), Expect = 2.410e-13
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 2 
Query:  185 DDIGISDSQAAMLETKIDPVEWKRELERVGPRLKMAASAA-GKEWRGHVEQTKKHEEAIQASLPVTTTQLALIGT 406
            +D  + +S   M+ +++DP+ WK ELERVGPRLK+ A    GKEW  H+E+T+KHE  I+  LP + TQL L+GT
Sbjct:  709 EDNALEESYQQMIVSEVDPLLWKTELERVGPRLKVQAKDDDGKEWHAHIERTRKHETLIKELLPRSNTQLKLLGT 783
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BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Match: H3HAT8_PHYRM (Uncharacterized protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3HAT8_PHYRM)

HSP 1 Score: 75.1 bits (183), Expect = 3.780e-13
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 2 
Query:  164 SGQAEEDDDIGISDSQAAMLETKIDPVEWKRELERVGPRLKM----AASAAGKEWRGHVEQTKKHEEAIQASLPVTTTQLALIGTE 409
            SG+A ED    +  S   M+ + +DP+ WK ELERVGPRLK+    A +AAGKEW  H+E++++HE  ++A LP    QL L+GT+
Sbjct:  196 SGKAAEDQH-DLDQSFQQMIMSAVDPLLWKTELERVGPRLKVKNGAAGAAAGKEWHAHIERSREHETVMRALLPRANAQLRLLGTQ 280
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BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Match: A0A388KV80_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KV80_CHABU)

HSP 1 Score: 74.3 bits (181), Expect = 7.730e-13
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 2 
Query:  134 IEGPEYTHFWSGQAEEDDDIGIS-DSQA-AMLETKIDPVEWKRELERVGPRLKMAASAAGKEWRGHVEQTKKHEEAIQASLPVTTTQLALIGTEV 412
            I G E    +  + E ++D GIS D++A A+LE+K+DP EWK ELERVGP+L++ A A  K+WR H++QTK+  E I   LP    QL  + +EV
Sbjct:  299 IPGLEEEEPFMQEVERENDFGISGDAEATAVLESKVDPHEWKLELERVGPQLRVTAVADVKDWRTHLDQTKQMHEQITKHLPECKFQLEKVESEV 393
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6832.15593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK4_ECTSI1.410e-4090.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K333_9PHAE1.050e-3262.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZP1_9STRA8.700e-1856.76Intra-flagellar transport protein 57-domain-contai... [more]
A0A7S3XR66_HETAK3.420e-1652.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0Y310_AURAN8.960e-1545.83Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2WNS5_9STRA1.160e-1456.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D4BPI7_PYTIN1.630e-1349.33Intraflagellar Transport Protein 57 (Fragment) n=1... [more]
A0A2D4CD25_PYTIN2.410e-1349.33Intraflagellar Transport Protein 57 n=1 Tax=Pythiu... [more]
H3HAT8_PHYRM3.780e-1346.51Uncharacterized protein n=20 Tax=Phytophthora TaxI... [more]
A0A388KV80_CHABU7.730e-1346.32Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6832contigL-elsbetiae_contig6832:332..1488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue6.7e-27
Seed eggNOG ortholog2880.D8LLK4
Preferred nameIFT57
KEGG koko:K04638
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001754,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0003002,GO:0003007,GO:0003143,GO:0003341,GO:0003351,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006915,GO:0006919,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007635,GO:0008104,GO:0008150,GO:0008219,GO:0008285,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009987,GO:0010604,GO:0010646,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010970,GO:0012501,GO:0012505,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0019222,GO:0021915,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031323,GO:0031325,GO:0031503,GO:0032006,GO:0032268,GO:0032270,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0035050,GO:0035148,GO:0035239,GO:0035295,GO:0035720,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0036477,GO:0042073,GO:0042127,GO:0042221,GO:0042461,GO:0042462,GO:0042592,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043280,GO:0043281,GO:0044085,GO:0044093,GO:0044292,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045494,GO:0045862,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048592,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0060249,GO:0060255,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0060972,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0080090,GO:0090596,GO:0097014,GO:0097447,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902531,GO:1905515,GO:2000116,GO:2001056
EggNOG free text desc.intraciliary transport
EggNOG OGsKOG0972@1,KOG0972@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons2
Model size412
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6832.15593.1prot_L-elsbetiae_contig6832.15593.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6832 549..1488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.8907685-UTR-L-elsbetiae_contig6832:331..5481622816756.8907685-UTR-L-elsbetiae_contig6832:331..548Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6832 332..548 +
1691683790.1364021-UTR-L-elsbetiae_contig6832:331..5481691683790.1364021-UTR-L-elsbetiae_contig6832:331..548Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6832 332..548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.9032233-CDS-L-elsbetiae_contig6832:548..6171622816756.9032233-CDS-L-elsbetiae_contig6832:548..617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6832 549..617 +
1691683790.1482217-CDS-L-elsbetiae_contig6832:548..6171691683790.1482217-CDS-L-elsbetiae_contig6832:548..617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6832 549..617 +
1622816756.9161873-CDS-L-elsbetiae_contig6832:1362..14881622816756.9161873-CDS-L-elsbetiae_contig6832:1362..1488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6832 1363..1488 +
1691683790.157646-CDS-L-elsbetiae_contig6832:1362..14881691683790.157646-CDS-L-elsbetiae_contig6832:1362..1488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6832 1363..1488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6832.15593.1

>prot_L-elsbetiae_contig6832.15593.1 ID=prot_L-elsbetiae_contig6832.15593.1|Name=mRNA_L-elsbetiae_contig6832.15593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MLETKIDPVEWKRELERVGPRLKMAASAAGKEWRGHVEQTKKHEEAIQAS
LPVTTTQLALIGTEV
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mRNA from alignment at L-elsbetiae_contig6832:332..1488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6832.15593.1 ID=mRNA_L-elsbetiae_contig6832.15593.1|Name=mRNA_L-elsbetiae_contig6832.15593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1157bp|location=Sequence derived from alignment at L-elsbetiae_contig6832:332..1488+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGAGAGCAGGGCAAGAGCTGGCAGGCCTTTCCCGAGCGTAAATCGCG
ATACACACGTCGTCCTCTGCGCTGCTGTATAGCTGCTGCCTTTGTATCAT
GATACGTCGTAAGTCGTTGTACTGGCGCAAGCAATCGAAGGCCCGGAATA
TACTCACTTTTGGTCTGGTCAGGCGGAAGAAGACGACGACATTGGCATTA
GCGATAGCCAGGCGGCCATGCTGGAGACCAAGATTGACCCCGTCGAGTGG
AAGCGAGAGCTAGAGCGCGTCGGACCCAGACTAAAGGTGCCCGCCCGCTA
CATAGTCTAGAACCAAAGTAGTAACCTAACTATTTACAGAAGAAAACCAC
GACCTACCCGGAGCTAAACTACGCGCGAAACCGGGCACGGACGCAGCAGC
AGCAACGAAACAGAATGCGCCACCTGTTATTGGAGGGCGGCGAGAGATTT
GAGAGCGATATACATATGAACTAGAACGTTGTGCGACATTTGTTTGCGGT
AAAACGCGCGCGAGCAAAACGATGCCACCAACCACTTCAAGCTTTGCTTG
TTCGGCTTCGTTTCCATCACTACGGGTGGGCATTCCAAACATTGGTCCGA
ACACTCAAGATACTCGACTTTCTGGCCGCTCCTCCAGCTGCCGAGCGACG
ATTAGCCCTTCGATATGCCCACCTTACCCTTTTGTTTTGCGCCACAATAC
GCTCTTTAGCACACCAAACTCTCCACGTGGAAATATTGGTTCGACAGGGT
GACAGAGGTGCAGGCGCGAGTATACTTTATCACAACACGAAATGGAACGT
GAAGCAAATATAAACGACAAGAGTTGAGTACCGAACAAAAAAGGACGGAG
GCGAAAAGGAAGCACATGGCGTATCTCACTGAGAGCACAATAGGCACGCA
CACGAAGAGGGCAAGCTTACCTGAACGCGTGCACTCGGTTTCTTGGCGAC
GAAAAAAAGCGCTGCTATCTTCCGCGTCCGTTGTCTTTAATTAATTAAGC
ACGCAACGAACACACGATGTCGCGGTGCCAGATGGCAGCCTCGGCTGCGG
GCAAGGAGTGGAGGGGGCACGTGGAGCAGACGAAGAAGCACGAGGAGGCG
ATCCAGGCCTCTCTGCCCGTGACCACCACGCAGTTAGCGCTCATCGGGAC
TGAGGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6832:332..1488+

>mRNA_L-elsbetiae_contig6832.15593.1 ID=mRNA_L-elsbetiae_contig6832.15593.1|Name=mRNA_L-elsbetiae_contig6832.15593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig6832:332..1488+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGAGACCAAGATTGACCCCGTCGAGTGGAAGCGAGAGCTAGAGCG
CGTCGGACCCAGACTAAAGATGCTGGAGACCAAGATTGACCCCGTCGAGT
GGAAGCGAGAGCTAGAGCGCGTCGGACCCAGACTAAAGATGGCAGCCTCG
GCTGCGGGCAAGGAGTGGAGGGGGCACGTGGAGCAGACGAAGAAGCACGA
GGAGGCGATCCAGGCCTCTCTGCCCGTGACCACCACGCAGTTAGCGCTCA
TCGGGACTGAGGTCATGGCAGCCTCGGCTGCGGGCAAGGAGTGGAGGGGG
CACGTGGAGCAGACGAAGAAGCACGAGGAGGCGATCCAGGCCTCTCTGCC
CGTGACCACCACGCAGTTAGCGCTCATCGGGACTGAGGTC
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