mRNA_L-elsbetiae_contig6831.15590.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6831.15590.1
Unique NamemRNA_L-elsbetiae_contig6831.15590.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6831.15590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6831contigL-elsbetiae_contig6831:517..1207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size691
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6831.15590.1prot_L-elsbetiae_contig6831.15590.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6831 524..928 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.6941931-UTR-L-elsbetiae_contig6831:516..5231622816756.6941931-UTR-L-elsbetiae_contig6831:516..523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6831 517..523 +
1691683790.0339866-UTR-L-elsbetiae_contig6831:516..5231691683790.0339866-UTR-L-elsbetiae_contig6831:516..523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6831 517..523 +
1622816756.719326-UTR-L-elsbetiae_contig6831:928..12071622816756.719326-UTR-L-elsbetiae_contig6831:928..1207Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6831 929..1207 +
1691683790.055551-UTR-L-elsbetiae_contig6831:928..12071691683790.055551-UTR-L-elsbetiae_contig6831:928..1207Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6831 929..1207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.7076542-CDS-L-elsbetiae_contig6831:523..9281622816756.7076542-CDS-L-elsbetiae_contig6831:523..928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6831 524..928 +
1691683790.044957-CDS-L-elsbetiae_contig6831:523..9281691683790.044957-CDS-L-elsbetiae_contig6831:523..928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6831 524..928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6831.15590.1

>prot_L-elsbetiae_contig6831.15590.1 ID=prot_L-elsbetiae_contig6831.15590.1|Name=mRNA_L-elsbetiae_contig6831.15590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MHIIDRCTSILPCIRYMNGICPSSTYYFCDIYTCSTFVRVHTAVVVAFVV
VVDRVYSTFVRVHTAVVAVVVAFVVVVDQVYITFVRVHTAVVVVVVAFVA
VDRVVVCFYLSSALVLCSDISPDKTRPCGCLLHK*
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mRNA from alignment at L-elsbetiae_contig6831:517..1207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6831.15590.1 ID=mRNA_L-elsbetiae_contig6831.15590.1|Name=mRNA_L-elsbetiae_contig6831.15590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=691bp|location=Sequence derived from alignment at L-elsbetiae_contig6831:517..1207+ (Laminarionema elsbetiae ELsaHSoW15)
AATATGTATGCACATCATAGATAGATGTACATCCATCCTCCCTTGTATCC
GTTACATGAACGGCATTTGTCCGTCAAGCACTTACTACTTTTGTGATATC
TACACGTGTAGTACCTTTGTGAGGGTACACACAGCAGTAGTAGTGGCGTT
CGTTGTAGTAGTCGATCGAGTATACAGTACCTTTGTGAGGGTACACACAG
CAGTAGTAGCAGTAGTAGTGGCGTTCGTTGTAGTAGTCGATCAAGTATAC
ATTACCTTTGTGAGGGTACACACAGCAGTAGTAGTAGTAGTAGTGGCGTT
CGTTGCAGTCGATCGAGTGGTGGTTTGTTTCTATCTATCCAGTGCACTTG
TATTGTGTAGTGATATCTCCCCTGATAAAACAAGACCGTGCGGTTGCCTA
CTACACAAATAATAGATGCATGTCCTCTCTCCCGAATCCCTCCCTTCTTT
CTCCTCGCATCTTGCCTCGCGCCCACACTCTCCCTGTCAGTTTTCTGTCT
TTATAGCACAGCAGCATCAGTAAGCATTATTTCCAAAAAAATATAGGAGA
TTTTAGACGAGGCTGGGCTACCCCAGGCGATTTATTTTTTACACTTGTCT
AGACCAAATTACATTTTTCACGTTTCGACCAAGGGACGGAATATGCCATT
TTGACCCCGGGCATGCACGCACGTCGCGCTGCCGTTTCTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6831:517..1207+

>mRNA_L-elsbetiae_contig6831.15590.1 ID=mRNA_L-elsbetiae_contig6831.15590.1|Name=mRNA_L-elsbetiae_contig6831.15590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig6831:517..1207+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACATCATAGATAGATGTACATCCATCCTCCCTTGTATCCGTTACAT
GAACGGCATTTGTCCGTCAAGCACTTACTACTTTTGTGATATCTACACGT
GTAGTACCTTTGTGAGGGTACACACAGCAGTAGTAGTGGCGTTCGTTGTA
GTAGTCGATCGAGTATACAGTACCTTTGTGAGGGTACACACAGCAGTAGT
AGCAGTAGTAGTGGCGTTCGTTGTAGTAGTCGATCAAGTATACATTACCT
TTGTGAGGGTACACACAGCAGTAGTAGTAGTAGTAGTGGCGTTCGTTGCA
GTCGATCGAGTGGTGGTTTGTTTCTATCTATCCAGTGCACTTGTATTGTG
TAGTGATATCTCCCCTGATAAAACAAGACCGTGCGGTTGCCTACTACACA
AATAAATGCACATCATAGATAGATGTACATCCATCCTCCCTTGTATCCGT
TACATGAACGGCATTTGTCCGTCAAGCACTTACTACTTTTGTGATATCTA
CACGTGTAGTACCTTTGTGAGGGTACACACAGCAGTAGTAGTGGCGTTCG
TTGTAGTAGTCGATCGAGTATACAGTACCTTTGTGAGGGTACACACAGCA
GTAGTAGCAGTAGTAGTGGCGTTCGTTGTAGTAGTCGATCAAGTATACAT
TACCTTTGTGAGGGTACACACAGCAGTAGTAGTAGTAGTAGTGGCGTTCG
TTGCAGTCGATCGAGTGGTGGTTTGTTTCTATCTATCCAGTGCACTTGTA
TTGTGTAGTGATATCTCCCCTGATAAAACAAGACCGTGCGGTTGCCTACT
ACACAAATAA
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