mRNA_L-elsbetiae_contig6824.15583.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6824.15583.1
Unique NamemRNA_L-elsbetiae_contig6824.15583.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Match: D8LFV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV3_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.990e-45
Identity = 79/98 (80.61%), Postives = 86/98 (87.76%), Query Frame = 2
Query:    2 GRDRVSYMKPVGQKHVLVAGTGGEPLKVDKDVAVAREHFGLSASYSAMSPLVLYKGYTKRFLDGKIDARQQEEVIQRGFEELIQENDFVVVEGTGHTG 295
            G  RVSYMKPVGQKHVLV G  GE LKVDKDVAVA+E+FGLSA Y+AMSPLVLYKGYTK FLDGK+D R+Q+ VIQ GFEELI+ NDFVVVEGTGHTG
Sbjct:   48 GPTRVSYMKPVGQKHVLVTGKDGEDLKVDKDVAVAKEYFGLSAPYNAMSPLVLYKGYTKDFLDGKMDVREQKRVIQDGFEELIRSNDFVVVEGTGHTG 145          
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Match: A0A6H5JE31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE31_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 4.660e-38
Identity = 73/98 (74.49%), Postives = 79/98 (80.61%), Query Frame = 2
Query:    2 GRDRVSYMKPVGQKHVLVAGTGGEPLKVDKDVAVAREHFGLSASYSAMSPLVLYKGYTKRFLDGKIDARQQEEVIQRGFEELIQENDFVVVEGTGHTG 295
            G  RVSYMKPVGQKHVLV          DKDVAV RE+FGLSA Y+AMSPLVLYKGYTK FLDGK+D R+Q+ VIQ GFEELI+ NDFVVVEGTGHTG
Sbjct:   96 GPTRVSYMKPVGQKHVLV----------DKDVAVVREYFGLSAPYNAMSPLVLYKGYTKDFLDGKMDVREQKRVIQDGFEELIRSNDFVVVEGTGHTG 183          
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Match: A0A836C8E0_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.300e-28
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 2
Query:    2 GRDRVSYMKPVGQKHVLVAGTGGEPLKVDKDVAVAREHFGLSASYSAMSPLVLYKGYTKRFLDGKIDARQQEEVIQRGFEELIQENDFVVVEGTGHTG 295
            G + V Y+KPVGQK V V    GE L+VDKDV VAREH+GL+ +Y  MSPLVL KGYT+R+LDG++D  +Q   IQ+ F+ ++ +   V+VEGTGHTG
Sbjct:   27 GVENVGYIKPVGQKWVPVPDDSGEVLQVDKDVKVAREHWGLTCNYRDMSPLVLDKGYTRRYLDGQVDISKQFAAIQQAFDNMLSQKQVVIVEGTGHTG 124          
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Match: A0A7S3S2W9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S2W9_9SPIT)

HSP 1 Score: 97.4 bits (241), Expect = 1.470e-23
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 2
Query:   11 RVSYMKPVGQKHVLVAGTGGEPLKVDKDVAVAREHFGLS-ASYSAMSPLVLYKGYTKRFLDGKIDARQQEEVIQRGFEELIQENDFVVVEGTGHTG 295
            +V ++KPVGQ+HV V  + G+ ++VDKDV V +E+FGL   SY  MSP+++ KGYTK F+DGK+D + Q + I+  F E+ + ++  +VEGTGH G
Sbjct:   33 KVGFIKPVGQQHVPVRTSDGKEIRVDKDVVVMKEYFGLDHMSYEHMSPVLVPKGYTKDFIDGKVDRQSQVDRIRESFAEIEKRSEVTLVEGTGHVG 128          
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Match: A0A7R9U109_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U109_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.650e-23
Identity = 48/96 (50.00%), Postives = 69/96 (71.88%), Query Frame = 2
Query:    8 DRVSYMKPVGQKHVLVAGTGGEPLKVDKDVAVAREHFGLSASYSAMSPLVLYKGYTKRFLDGKIDARQQEEVIQRGFEELIQENDFVVVEGTGHTG 295
            + V++ KPVGQ+H+ + G     +KVDKDV V +EHFGL+  Y  MSP+++ +GYT+ F+DGK   + QE+ I R FE L +++D VV+EGTGHTG
Sbjct:   51 ESVAFGKPVGQQHLQIDG-----MKVDKDVQVLKEHFGLTCKYQDMSPVLVPRGYTRDFIDGKRSEKDQEDAILRSFEALSRDSDVVVMEGTGHTG 141          
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Match: A0A0W8CTD8_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CTD8_PHYNI)

HSP 1 Score: 97.8 bits (242), Expect = 5.190e-23
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    8 DRVSYMKPVGQKHVLVAGTGGEPLKVDKDVAVAREHFGL-SASYSAMSPLVLYKGYTKRFLDGKIDARQQEEVIQRGFEELIQENDFVVVEGTGHTG 295
            DR+ ++KPVGQ+ V V G     L+VDKDVAVA+E F L + +Y+ MSP+V+  GYTKRFLDG I    Q + I+  F+ + + N+F VVEGTGHTG
Sbjct:   40 DRIGFLKPVGQESVAVEGGS---LRVDKDVAVAKEVFKLDTCNYADMSPVVIMPGYTKRFLDGHITVESQLDKIRTSFKRITEANEFTVVEGTGHTG 133          
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Match: A0A836CAU9_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.060e-22
Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 2
Query:    8 DRVSYMKPVGQKHVLVAGTGGEPLKVDKDVAVAREHFGLSASYSAMSPLVLYKGYTKRFLDGKIDARQQEEVIQRGFEELIQENDFVVVEGTGHTG 295
            + V ++KPVGQ+H +V   G   L+VDKDV + +E FGL  +Y  MSP+V+ +GYT+ ++DGKI  + Q + I R FE + ++ND VV+EGTGHTG
Sbjct:   32 ENVGFVKPVGQQHEVVGSAG---LRVDKDVTLMKEFFGLKGNYEDMSPVVVPRGYTRDYIDGKICEQGQLDSIHRSFENIQRQNDIVVLEGTGHTG 124          
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Match: A0A7R9U612_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U612_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.240e-22
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 2
Query:   11 RVSYMKPVGQKHVLVAGTGGEPLKVDKDVAVAREHFGLSASYSAMSPLVLYKGYTKRFLDGKI---DARQQEEVIQRGFEELIQENDFVVVEGTGHTG 295
            RV YMKP+GQK + V G  G P++VDKDV VAR+HF +   ++ MSP+V+ +G TK+FLDG+    + R   + IQ  F  +    DF VVEGTGH G
Sbjct:   19 RVGYMKPIGQKWIPVRGPSGAPMRVDKDVVVARDHFNMRLDFADMSPVVVGRGETKKFLDGRKAEWEDRALGQTIQSAFRRISGACDFTVVEGTGHCG 116          
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Match: H3GRB5_PHYRM (DRTGG domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3GRB5_PHYRM)

HSP 1 Score: 97.8 bits (242), Expect = 4.100e-22
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    8 DRVSYMKPVGQKHVLVAGTGGEPLKVDKDVAVAREHFGLSA-SYSAMSPLVLYKGYTKRFLDGKIDARQQEEVIQRGFEELIQENDFVVVEGTGHTG 295
            DR+ ++KPVGQ+ V V G     L+VDKDVAVA+E F L+   Y+ MSP+V+  GYTKRFLDG I    Q + I+  F+++ + N+F VVEGTGHTG
Sbjct:   32 DRIGFLKPVGQESVAVEGGS---LRVDKDVAVAKEVFKLATCDYADMSPVVIMPGYTKRFLDGHITVESQLDKIRSSFKKIAEANEFTVVEGTGHTG 125          
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Match: D0N8P2_PHYIT (DRTGG domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0N8P2_PHYIT)

HSP 1 Score: 97.8 bits (242), Expect = 4.410e-22
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    8 DRVSYMKPVGQKHVLVAGTGGEPLKVDKDVAVAREHFGL-SASYSAMSPLVLYKGYTKRFLDGKIDARQQEEVIQRGFEELIQENDFVVVEGTGHTG 295
            DR+ ++KPVGQ+ V V G     L+VDKDVAVA+E F L + +Y+ MSP+V+  GYTKRFLDG I    Q + I+  F+ + + N+F VVEGTGHTG
Sbjct:   39 DRIGFLKPVGQESVAVEGGS---LRVDKDVAVAKEVFKLDTCNYADMSPVVIMPGYTKRFLDGHITVESQLDKIRTSFKRITEANEFTVVEGTGHTG 132          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6824.15583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV3_ECTSI1.990e-4580.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JE31_9PHAE4.660e-3874.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8E0_9STRA2.300e-2856.12AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3S2W9_9SPIT1.470e-2347.92Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7R9U109_9STRA3.650e-2350.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0W8CTD8_PHYNI5.190e-2352.58Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A836CAU9_9STRA2.060e-2248.96AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7R9U612_9STRA3.240e-2248.98Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
H3GRB5_PHYRM4.100e-2252.58DRTGG domain-containing protein n=4 Tax=Phytophtho... [more]
D0N8P2_PHYIT4.410e-2252.58DRTGG domain-containing protein n=12 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6824contigL-elsbetiae_contig6824:1460..2580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size297
Cds size297
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6824.15583.1prot_L-elsbetiae_contig6824.15583.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6824 1460..2580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.06485-CDS-L-elsbetiae_contig6824:1459..15601622816756.06485-CDS-L-elsbetiae_contig6824:1459..1560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6824 1460..1560 -
1691683789.6038148-CDS-L-elsbetiae_contig6824:1459..15601691683789.6038148-CDS-L-elsbetiae_contig6824:1459..1560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6824 1460..1560 -
1622816756.0780573-CDS-L-elsbetiae_contig6824:1918..20321622816756.0780573-CDS-L-elsbetiae_contig6824:1918..2032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6824 1919..2032 -
1691683789.6143453-CDS-L-elsbetiae_contig6824:1918..20321691683789.6143453-CDS-L-elsbetiae_contig6824:1918..2032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6824 1919..2032 -
1622816756.0885124-CDS-L-elsbetiae_contig6824:2498..25801622816756.0885124-CDS-L-elsbetiae_contig6824:2498..2580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6824 2499..2580 -
1691683789.6249664-CDS-L-elsbetiae_contig6824:2498..25801691683789.6249664-CDS-L-elsbetiae_contig6824:2498..2580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6824 2499..2580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6824.15583.1

>prot_L-elsbetiae_contig6824.15583.1 ID=prot_L-elsbetiae_contig6824.15583.1|Name=mRNA_L-elsbetiae_contig6824.15583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
RAGPRELHETRRAEARARGRDGRRTPQGRQGRSCCQGALRPLGFLQRDVA
PGPLQGLHEAFPRRQDRRPAARGGDSKRVRGADPGERLCRGRRDRTHR*
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mRNA from alignment at L-elsbetiae_contig6824:1460..2580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6824.15583.1 ID=mRNA_L-elsbetiae_contig6824.15583.1|Name=mRNA_L-elsbetiae_contig6824.15583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1121bp|location=Sequence derived from alignment at L-elsbetiae_contig6824:1460..2580- (Laminarionema elsbetiae ELsaHSoW15)
CGGGCGGGACCGCGTGAGCTACATGAAACCCGTCGGGCAGAAGCACGTGC TCGTGGCAGGGACGGGCGGCGAACCCCTCAAGGTACACGTAAACCCGTGC GTACATGCGTCGTGTGTATTAGCCTGTCTACAGGTATTAGCCTGTCTATA GGGAGCAAGCGCGCGGCGTGGGTGTTGTCGGGCTCGGCCTTTCAGAAACA CGCAAGGGCCGTCTCTCGATCGATCGGCAAATAAAGGAAGCGCCGTGGCG TGGGTGCTGTTTTTTGCCTCGGCCTGCCGTGGACGCCCAGGCTGCCTCGA AGTTTTCCTAAACGTACGTGAATATTTCTGCTCAGCTTTTGCCGCTGCAG TTCTGGCTGAAGTCGTCGTGTATAGATGCGACGTGTGTTTTCGTTCAGGG TTGTTGTGCGACGTGCGTGCTGTGGCCGGCCTCGCTCTCTCTCCCTCTCT CTCCTCTCTCTTCTCTCTCTGCGTCACGACCGCGCAAAGGCCCCGGGGAG GCGATTTTCCCTCTTTTTAACCCTCGATCTGCTGCTTTGCATCGCCAGGT CGACAAGGACGTAGCTGTTGCCAGGGAGCACTTCGGCCTCTCGGCTTCCT ACAGCGCGATGTCGCCCCTGGTCCTCTACAAGGGCTACACGAAGCGTTTC CTCGACGGCAAGGTGAGGAAAAAAAGCGGCCCCGTGGTGGTGCGAGGTAT GTTTGTATGTACATCGAAAAACAAGACCCATCTGTGTGGCCCCGGCTCTG AGACATGGGTATTTTGTAGAGATACGGTGGTCTGCCACCTAAGGACTATG TAGATGTATGAGTTAAGCTGTGCGTGAAAGCAGTTGCTCCTGGCGATGCT TCCGACTCAGCGGTTGTTGGGTGGGCATACGACGGTACCTGCGTGCCGGA AAGGGGCACCGTAGGCTTCACACAGCGCCGGAACCGATGGCGCGCGCGCT CGGCCGCCGACACCCATGCATGTACCGCCGAGGCCGCTTGCAACGGTACC GCGTTTGCGTGTCTCCACAGATCGACGCCCGGCAGCAAGAGGAGGTGATT CAAAGAGGGTTCGAGGAGCTGATCCAGGAGAACGACTTTGTCGTGGTCGA AGGGACCGGACACACAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6824:1460..2580-

>mRNA_L-elsbetiae_contig6824.15583.1 ID=mRNA_L-elsbetiae_contig6824.15583.1|Name=mRNA_L-elsbetiae_contig6824.15583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig6824:1460..2580- (Laminarionema elsbetiae ELsaHSoW15)
CGGGCGGGACCGCGTGAGCTACATGAAACCCGTCGGGCAGAAGCACGTGC
TCGTGGCAGGGACGGGCGGCGAACCCCTCAAGCGGGCGGGACCGCGTGAG
CTACATGAAACCCGTCGGGCAGAAGCACGTGCTCGTGGCAGGGACGGGCG
GCGAACCCCTCAAGGTCGACAAGGACGTAGCTGTTGCCAGGGAGCACTTC
GGCCTCTCGGCTTCCTACAGCGCGATGTCGCCCCTGGTCCTCTACAAGGG
CTACACGAAGCGTTTCCTCGACGGCAAGGTCGACAAGGACGTAGCTGTTG
CCAGGGAGCACTTCGGCCTCTCGGCTTCCTACAGCGCGATGTCGCCCCTG
GTCCTCTACAAGGGCTACACGAAGCGTTTCCTCGACGGCAAGATCGACGC
CCGGCAGCAAGAGGAGGTGATTCAAAGAGGGTTCGAGGAGCTGATCCAGG
AGAACGACTTTGTCGTGGTCGAAGGGACCGGACACACAGGTGAATCGACG
CCCGGCAGCAAGAGGAGGTGATTCAAAGAGGGTTCGAGGAGCTGATCCAG
GAGAACGACTTTGTCGTGGTCGAAGGGACCGGACACACAGGTGA
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