|
Homology
BLAST of mRNA_L-elsbetiae_contig6823.15582.1 vs. uniprot
Match: A0A6H5LJ37_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJ37_9PHAE) HSP 1 Score: 313 bits (803), Expect = 1.660e-97 Identity = 158/183 (86.34%), Postives = 166/183 (90.71%), Query Frame = 2
Query: 608 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLLGREERLRMVNFYMKIYLLDPPGRAKIITMDGVAHSHLQEVADLTEGLSGREIAKLAIAWQAAAYGTSDSSFTAELMTEVLDAHLQQKRQKQAWLEGAQTSSGG*LCPPPT 1156
+ LLFVDEADAFLRRRNTETISEDL NALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMV F L GREERLRMVN YMK YLLDPPG+AK+I +DG+ SHLQ+VADLTEG SGREIAKLAIAWQAAAYGT DSSF AELMTEVL AHLQQKRQKQAWLEGAQTSSGG + PPP+
Sbjct: 413 KGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVRFDLPGREERLRMVNLYMKNYLLDPPGKAKVIRVDGIEDSHLQDVADLTEGFSGREIAKLAIAWQAAAYGTPDSSFNAELMTEVLQAHLQQKRQKQAWLEGAQTSSGGLIMPPPS 595
BLAST of mRNA_L-elsbetiae_contig6823.15582.1 vs. uniprot
Match: A0A835YR91_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR91_9STRA) HSP 1 Score: 264 bits (675), Expect = 1.190e-78 Identity = 141/207 (68.12%), Postives = 160/207 (77.29%), Query Frame = 1
Query: 1 GIKPAGGTLAAGMQEFLSDKDQMVAATATLTAMALGIYTARTGTGPAFLTQPSPPPNTTFPCRNLGVAGRYIEARLGKPPLLRETSRPTSFETVRNPVPTIKRAFGMHKVEDALSGVVLEKSLETRLSRVAQSTFNTKRNNAPFQHLLLYGPPGAGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMQKVFDCAQASRKGLSL 621
GIK AG TL G++ FL DK++M+AAT TLTA+ALGIYTA+TGTG VAGRY+EARLGKP L+RETS+ + E ++NP+P+ KRAFG K +AL GVVLE LETRLSRVAQSTFNTK+N APF+HLLLYGPPG GKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEM K+FD AQAS KGL L
Sbjct: 218 GIKLAGETLGTGIKTFLGDKEKMLAATTTLTAVALGIYTAKTGTG---------------------VAGRYLEARLGKPSLVRETSKRSVSEVIKNPIPSFKRAFGFLKPSNALEGVVLEPKLETRLSRVAQSTFNTKKNKAPFRHLLLYGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKLFDWAQASNKGLLL 403
BLAST of mRNA_L-elsbetiae_contig6823.15582.1 vs. uniprot
Match: A0A7S2D4S5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D4S5_9STRA) HSP 1 Score: 233 bits (594), Expect = 8.860e-68 Identity = 127/207 (61.35%), Postives = 148/207 (71.50%), Query Frame = 1
Query: 1 GIKPAGGTLAAGMQEFLSDKDQMVAATATLTAMALGIYTARTGTGPAFLTQPSPPPNTTFPCRNLGVAGRYIEARLGKPPLLRETSRPTSFETVRNPVPTIKRAFGMHKVEDALSGVVLEKSLETRLSRVAQSTFNTKRNNAPFQHLLLYGPPGAGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMQKVFDCAQASRKGLSL 621
GIK AG TL G + FLSDK++M AA ATL+A+ALG+Y+A+ GTG VAGRY+EARLGKP L+RETSR + +R+PV T+KR +ALSGVVLE L RLSRVA ST NTKRN APF+HLLLYGPPG GKT+FAKGLAR SGLEYAI+TGGD+APLGRDAVTE+ KVFD A S+KGL L
Sbjct: 150 GIKLAGSTLGEGARAFLSDKEKMAAAVATLSAIALGVYSAKVGTG---------------------VAGRYVEARLGKPSLVRETSRSSVLADLRSPVATMKRIMASTDASEALSGVVLEPKLADRLSRVATSTSNTKRNKAPFRHLLLYGPPGTGKTMFAKGLARSSGLEYAILTGGDVAPLGRDAVTEIHKVFDWANTSKKGLLL 335
BLAST of mRNA_L-elsbetiae_contig6823.15582.1 vs. uniprot
Match: A0A7S2Y4I1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4I1_9STRA) HSP 1 Score: 218 bits (554), Expect = 3.690e-65 Identity = 116/178 (65.17%), Postives = 134/178 (75.28%), Query Frame = 2
Query: 608 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLLGREERLRMVNFYMKIYLLDPPGRAK--IITMDGVAHSHLQEVADLTEGLSGREIAKLAIAWQAAAYGTSDSSFTAELMTEVLDAHLQQKRQKQAWLEGAQTSSGG 1135
+ LLFVDEADAFLRRR+ E ISEDL NALNAFLYRTGE+T KFMLVYASNQP+QFDWA+NDRIDEMV F L G EER RMV+ YMK YLLD AK IT++ + +H+ E A TE SGREIAKLAIAWQAAAYG+ D++F +M VL+ H QK QK+AWL+ SGG
Sbjct: 53 KGLLLFVDEADAFLRRRSVEHISEDLRNALNAFLYRTGEATGKFMLVYASNQPDQFDWAINDRIDEMVEFQLPGLEERKRMVSLYMKKYLLDQQDAAKGRAITVEDIEDNHIDEAAKATEHFSGREIAKLAIAWQAAAYGSVDATFNPSIMRSVLEVHCLQKAQKEAWLK----KSGG 226
BLAST of mRNA_L-elsbetiae_contig6823.15582.1 vs. uniprot
Match: A0A7S2WW12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW12_9STRA) HSP 1 Score: 216 bits (549), Expect = 1.940e-64 Identity = 109/174 (62.64%), Postives = 136/174 (78.16%), Query Frame = 2
Query: 608 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVPFGLLGREERLRMVNFYMKIYLLDP--------PGRAKIITMDGVAHSHLQEVADLTEGLSGREIAKLAIAWQAAAYGTSDSSFTAELMTEVLDAHLQQKRQKQAW 1105
R LLF+DE+DAFLR+R+TE +SEDL NALNAFLYRTGE T+KFMLVYASNQPEQFDWA+NDRIDEMV F L +EER+RM+ YM YL P KI+ ++GV S+++ +AD TEG SGREI+KLAIAWQAAAYG++D++FT ELM VL+AH++QK++K W
Sbjct: 65 RGLLLFIDESDAFLRKRSTEAMSEDLRNALNAFLYRTGEPTNKFMLVYASNQPEQFDWAINDRIDEMVEFALPSKEERVRMIQLYMDKYLYRSGEGGGFFSPASTKIL-VNGVEDSNIESIADRTEGFSGREISKLAIAWQAAAYGSADATFTVELMESVLEAHIEQKQRKAQW 237
BLAST of mRNA_L-elsbetiae_contig6823.15582.1 vs. uniprot
Match: A0A7S2ME04_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ME04_9STRA) HSP 1 Score: 226 bits (575), Expect = 2.240e-64 Identity = 125/207 (60.39%), Postives = 149/207 (71.98%), Query Frame = 1
Query: 1 GIKPAGGTLAAGMQEFLSDKDQMVAATATLTAMALGIYTARTGTGPAFLTQPSPPPNTTFPCRNLGVAGRYIEARLGKPPLLRETSRPTSFETVRNPVPTIKRAFGMHKVEDALSGVVLEKSLETRLSRVAQSTFNTKRNNAPFQHLLLYGPPGAGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMQKVFDCAQASRKGLSL 621
GIK AG T AG++ FLSDKD+M+AA T++A+A G+YTA+ GT VAGRYIEARLGKP L+RETSR + +++R P ++ K DAL+GVVLEK L RLSRVA ST NTKRN APF+HLLLYGPPG GKTLFAKGLA+HSGLEYAI+TGGD+APLGRDAVTE+ KVFD AQ SR+G+ L
Sbjct: 216 GIKLAGETFGAGVRGFLSDKDRMLAAVGTVSAIAAGVYTAKVGTS---------------------VAGRYIEARLGKPSLIRETSRISLTQSIRRPWTLLQSG----KKGDALAGVVLEKDLSERLSRVATSTANTKRNKAPFRHLLLYGPPGTGKTLFAKGLAKHSGLEYAILTGGDVAPLGRDAVTEIHKVFDWAQTSRRGVLL 397
BLAST of mRNA_L-elsbetiae_contig6823.15582.1 vs. uniprot
Match: A0A4D9D134_9STRA (AAA domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D134_9STRA) HSP 1 Score: 224 bits (570), Expect = 1.830e-63 Identity = 119/207 (57.49%), Postives = 150/207 (72.46%), Query Frame = 1
Query: 1 GIKPAGGTLAAGMQEFLSDKDQMVAATATLTAMALGIYTARTGTGPAFLTQPSPPPNTTFPCRNLGVAGRYIEARLGKPPLLRETSRPTSFETVRNPVPTIKRAFGMHKVEDALSGVVLEKSLETRLSRVAQSTFNTKRNNAPFQHLLLYGPPGAGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMQKVFDCAQASRKGLSL 621
GIK A L G+QEFL+DK+++ +A TL+A+ALG+Y A+T TG VAGRYIEARLGKP L+R+TSR T+ + +RNPVP+++R K EDAL GVVLEK L RL+RVA ST NTK N APF++LLL+GPPG GKTLFAKGLA +SGL+YAI+TGGD+APLG++AVTE+ KVFD A +RKG+ L
Sbjct: 223 GIKLASTELGKGLQEFLTDKERLTSAAVTLSAVALGVYAAKTSTG---------------------VAGRYIEARLGKPSLVRDTSRRTALQVLRNPVPSLRRLLSTTKAEDALKGVVLEKGLTERLTRVAISTANTKANGAPFRNLLLHGPPGTGKTLFAKGLAANSGLDYAILTGGDVAPLGKEAVTEIHKVFDWAGTTRKGVLL 408
BLAST of mRNA_L-elsbetiae_contig6823.15582.1 vs. uniprot
Match: A0A2D4BKB9_PYTIN (ATPase family AAA domain-containing protein 3A n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKB9_PYTIN) HSP 1 Score: 223 bits (568), Expect = 2.490e-63 Identity = 119/207 (57.49%), Postives = 145/207 (70.05%), Query Frame = 1
Query: 1 GIKPAGGTLAAGMQEFLSDKDQMVAATATLTAMALGIYTARTGTGPAFLTQPSPPPNTTFPCRNLGVAGRYIEARLGKPPLLRETSRPTSFETVRNPVPTIKRAFGMHKVEDALSGVVLEKSLETRLSRVAQSTFNTKRNNAPFQHLLLYGPPGAGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMQKVFDCAQASRKGLSL 621
GIK AG T+ AG+ F+ DK+++ A+LTA+ALGIYTA+ T VAG+YIEARLGKP L+RETSR + + V NP+P+I+R + K DAL GVVLE L+ RL VA STFNTK+N APF+HLLL+GPPG GKTLFAK LARHSGLEYAIMTGGD+APLGR+ VTE+ K+FD A SR+GL L
Sbjct: 216 GIKLAGSTVGAGIMTFVDDKEKLTTTVASLTALALGIYTAKVSTN---------------------VAGKYIEARLGKPSLVRETSRRSVAQVVSNPLPSIRRVLRLQKPHDALEGVVLEPKLDERLRSVAVSTFNTKKNRAPFRHLLLHGPPGTGKTLFAKALARHSGLEYAIMTGGDVAPLGREGVTEIHKLFDWATHSRRGLLL 401
BLAST of mRNA_L-elsbetiae_contig6823.15582.1 vs. uniprot
Match: A0A0P1A5E7_PLAHL (Atpase family aaa domain-containing protein 3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5E7_PLAHL) HSP 1 Score: 223 bits (568), Expect = 2.810e-63 Identity = 119/206 (57.77%), Postives = 144/206 (69.90%), Query Frame = 1
Query: 4 IKPAGGTLAAGMQEFLSDKDQMVAATATLTAMALGIYTARTGTGPAFLTQPSPPPNTTFPCRNLGVAGRYIEARLGKPPLLRETSRPTSFETVRNPVPTIKRAFGMHKVEDALSGVVLEKSLETRLSRVAQSTFNTKRNNAPFQHLLLYGPPGAGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMQKVFDCAQASRKGLSL 621
IK AG T+ +G+ F+ DK+++ A ATLTA+ALGIYTA+ T VAGRYIEAR+GKP L+RETSR ++ + V NP+P+IKRA + K DAL GVVLE L RL VA STF+TK N APF+HLLL+GPPG GKTLFAK LARHSGLEYAI+TGGD+APLGR VTE+ K+FD A SR+GL L
Sbjct: 224 IKLAGNTVGSGIMTFVDDKEKLTATVATLTALALGIYTAKVSTN---------------------VAGRYIEARMGKPSLVRETSRRSAVQVVANPIPSIKRALRLQKATDALEGVVLEPKLNERLRSVALSTFHTKANRAPFRHLLLHGPPGTGKTLFAKALARHSGLEYAILTGGDVAPLGRAGVTEIHKLFDWASQSRRGLLL 408
BLAST of mRNA_L-elsbetiae_contig6823.15582.1 vs. uniprot
Match: A0A024GA98_9STRA (AAA domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GA98_9STRA) HSP 1 Score: 222 bits (566), Expect = 5.610e-63 Identity = 116/207 (56.04%), Postives = 147/207 (71.01%), Query Frame = 1
Query: 1 GIKPAGGTLAAGMQEFLSDKDQMVAATATLTAMALGIYTARTGTGPAFLTQPSPPPNTTFPCRNLGVAGRYIEARLGKPPLLRETSRPTSFETVRNPVPTIKRAFGMHKVEDALSGVVLEKSLETRLSRVAQSTFNTKRNNAPFQHLLLYGPPGAGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMQKVFDCAQASRKGLSL 621
GI+ AG TL G+ F SDK+++ +A + TA+ALGIYTA+ TG VAGRY+EARLGKP L+RETSR ++ +++ NPVP+IKR + K+ D L GVVLE L+ RL +VA ST NTK+N APF+HLLL+GPPG GKTLFAK LARHSGL+YAI+TGGD+APLGR+ VTE+ K+FD A SR+GL L
Sbjct: 222 GIQVAGSTLGTGLMAFFSDKEKLTSAVVSFTALALGIYTAKVTTG---------------------VAGRYVEARLGKPSLVRETSRRSTAQSIINPVPSIKRLLNLEKIGDPLDGVVLEHKLDQRLRQVAVSTSNTKKNGAPFRHLLLHGPPGTGKTLFAKALARHSGLDYAILTGGDVAPLGREGVTEIHKLFDWASHSRRGLLL 407
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 295.0 |
Seed ortholog evalue | 5.2e-77 |
Seed eggNOG ortholog | 2880.D8LFV8 |
Preferred name | ATAD3A |
KEGG ko | ko:K17681 |
Hectar predicted targeting category | other localisation |
GOs | GO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010941,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0040008,GO:0042119,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0060548,GO:0065007,GO:0070820,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003 |
EggNOG free text desc. | mitochondrion organization |
EggNOG OGs | COG1223@1,KOG0742@2759 |
COG Functional cat. | O |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko03029 |
Exons | 8 |
Model size | 1274 |
Cds size | 1227 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816755.9282506-UTR-L-elsbetiae_contig6823:360..371 | 1622816755.9282506-UTR-L-elsbetiae_contig6823:360..371 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6823 361..371 - |
1691683789.4533768-UTR-L-elsbetiae_contig6823:360..371 | 1691683789.4533768-UTR-L-elsbetiae_contig6823:360..371 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6823 361..371 - |
1622816756.0326114-UTR-L-elsbetiae_contig6823:6715..6751 | 1622816756.0326114-UTR-L-elsbetiae_contig6823:6715..6751 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6823 6716..6751 - |
1691683789.5871377-UTR-L-elsbetiae_contig6823:6715..6751 | 1691683789.5871377-UTR-L-elsbetiae_contig6823:6715..6751 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6823 6716..6751 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816755.9390273-CDS-L-elsbetiae_contig6823:371..565 | 1622816755.9390273-CDS-L-elsbetiae_contig6823:371..565 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 372..565 - |
1691683789.4688435-CDS-L-elsbetiae_contig6823:371..565 | 1691683789.4688435-CDS-L-elsbetiae_contig6823:371..565 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 372..565 - |
1622816755.9498994-CDS-L-elsbetiae_contig6823:1155..1299 | 1622816755.9498994-CDS-L-elsbetiae_contig6823:1155..1299 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 1156..1299 - |
1691683789.4809177-CDS-L-elsbetiae_contig6823:1155..1299 | 1691683789.4809177-CDS-L-elsbetiae_contig6823:1155..1299 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 1156..1299 - |
1622816755.960317-CDS-L-elsbetiae_contig6823:2185..2380 | 1622816755.960317-CDS-L-elsbetiae_contig6823:2185..2380 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 2186..2380 - |
1691683789.4913547-CDS-L-elsbetiae_contig6823:2185..2380 | 1691683789.4913547-CDS-L-elsbetiae_contig6823:2185..2380 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 2186..2380 - |
1622816755.9703882-CDS-L-elsbetiae_contig6823:2925..3058 | 1622816755.9703882-CDS-L-elsbetiae_contig6823:2925..3058 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 2926..3058 - |
1691683789.509605-CDS-L-elsbetiae_contig6823:2925..3058 | 1691683789.509605-CDS-L-elsbetiae_contig6823:2925..3058 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 2926..3058 - |
1622816755.9826596-CDS-L-elsbetiae_contig6823:3521..3667 | 1622816755.9826596-CDS-L-elsbetiae_contig6823:3521..3667 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 3522..3667 - |
1691683789.524764-CDS-L-elsbetiae_contig6823:3521..3667 | 1691683789.524764-CDS-L-elsbetiae_contig6823:3521..3667 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 3522..3667 - |
1622816755.9951348-CDS-L-elsbetiae_contig6823:5004..5128 | 1622816755.9951348-CDS-L-elsbetiae_contig6823:5004..5128 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 5005..5128 - |
1691683789.5412815-CDS-L-elsbetiae_contig6823:5004..5128 | 1691683789.5412815-CDS-L-elsbetiae_contig6823:5004..5128 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 5005..5128 - |
1622816756.0058787-CDS-L-elsbetiae_contig6823:5782..5976 | 1622816756.0058787-CDS-L-elsbetiae_contig6823:5782..5976 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 5783..5976 - |
1691683789.5536377-CDS-L-elsbetiae_contig6823:5782..5976 | 1691683789.5536377-CDS-L-elsbetiae_contig6823:5782..5976 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 5783..5976 - |
1622816756.0185142-CDS-L-elsbetiae_contig6823:6618..6715 | 1622816756.0185142-CDS-L-elsbetiae_contig6823:6618..6715 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 6619..6715 - |
1691683789.5681968-CDS-L-elsbetiae_contig6823:6618..6715 | 1691683789.5681968-CDS-L-elsbetiae_contig6823:6618..6715 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6823 6619..6715 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6823.15582.1 >prot_L-elsbetiae_contig6823.15582.1 ID=prot_L-elsbetiae_contig6823.15582.1|Name=mRNA_L-elsbetiae_contig6823.15582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=409bp
MQEFLSDKDQMVAATATLTAMALGIYTARTGTGPAFLTQPSPPPNTTFPC RNLGVAGRYIEARLGKPPLLRETSRPTSFETVRNPVPTIKRAFGMHKVED ALSGVVLEKSLETRLSRVAQSTFNTKRNNAPFQHLLLYGPPGAGKTLFAK GLARHSGLEYAIMTGGDIAPLGRDAVTEMQKVFDCAQASRKGLSLVRRRG GRVPKAAQHGDHQRGPPQRPERLPLPHGRVHGQVYAGVRVESAGAVRLGG KRPDRRDGALRPPRPRRAAAHGELLHEDLPPGPSRQGQDHHDGRGGALSP AGSGGPDGGLIGARDRQACHRVAGGGVRHERLLLHGRAHDGGFGCAPAAE ETEAGVARGGADQLGGLIMPTPHAERMTPRLIRTLTQDAEEGVVGGSGEA SGKPRGTS* back to topmRNA from alignment at L-elsbetiae_contig6823:361..6751- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6823.15582.1 ID=mRNA_L-elsbetiae_contig6823.15582.1|Name=mRNA_L-elsbetiae_contig6823.15582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6391bp|location=Sequence derived from alignment at L-elsbetiae_contig6823:361..6751- (Laminarionema elsbetiae ELsaHSoW15) GGGATCAAGCCGGCGGGGGGCACGCTCGCCGCGGGTATGCAGGAGTTCCT
GAGCGATAAGGATCAGATGGTGGCGGCGACGGCCACCCTGACGGCCATGG
CCCTGGGGATCTACACCGCGAGAACGGGGACAGGTATGGAGGTTAGTTGT
TGTTGCTGCTGCTGCTGCTGCTGCTGTTGGGGCTGCCGTCTTGATCGTTG
TTGTCGTTGTTGGTGGTGATTTTGTCGTTGCTTGTGGTGGTGGTGATGTT
GATGTTGGTGTTGTCTTCTGGTTGTTTTGGTGGCGTGACTGTTGTTGGTT
TGGTTGTTGCCGTCGGATGGTAGTCAAACACGCAGGTGTCGATGTTGATA
TTGCTGTTGCTGCCTTTGCTGTTATTTGTGCCGGTGGTGGTATTGGCAGT
GTCTCTTGGTGGTGTTGGTGGCGTAATTGTTGTTGCTTGGTTTGCTGCGG
TCGGATGGTCATCATCGAGCCCGAGGTACAGATGGCTCCACGACTTGTTG
TTGTTCGTTGTTGTACATACGGGCCTTGGTTTTTGACCAGAGGCTTGGTG
TTCATTTTTCAGTCGGTGCATCTTTACCTAGGTTTTGGGGCACAGGTGCT
CATCCGGGCATCTAAAAAAGTGATCTCCGAGTTCTTAACAATTCACCGTG
TTCTTGAGTGGTGGCACCATCTGTATGTATGAAGCCTGTCACAAGAAGAC
TTATCCGTTAATCTGCTGTTGTTTCGTTTGGATAATAGGGAGGTAGAGTT
AGCTGGCCCTTAACAAAACAACAAGGTCCCGCTTTTCTGACTCAACCGTC
CCCGCCCCCCAACACTACTTTTCCGTGTCGAAACCTGGGTGTGGCCGGGC
GATACATCGAGGCCAGGCTTGGCAAGCCGCCACTCTTGCGAGAAACTTCC
AGGCCAACGTCCTTCGAGACGGTCCGCAACCCGGTTCCCACCATCAAGCG
CGCCTTTGGCATGCATAAGGTGTGTTTTATTGCTCACTTATCGCTCAAGG
GAGGCAGAGGGAGAAAGTAAGTCAGTGGGAGGGAGGGAAAGTGCGGAGCA
GGGAGACACAGAAGTAGAGAGAGAGAGGAATAGCGGCAGAGACAGACGCA
GAACCAGGAGCAGAGCGAGAGAGAATTACAGAGAGAGAGAGAGACAGAGA
GAGAGAGAGAGTAAACACGAGAGAGTTAAGGTGCACACAATATCCACTGA
GCTGTTAAGCAGCCAGCGCTGGTTGGAGGGACTACAAACCTCGGGTGAAA
TCGGAGTGTAACAGCCTTACTAGCTGTCGGACCCCGGTTTCATTTTTGTC
AAGGTTTATACAACGATATCCACGAGCTATTTTAAGCGATGATTGTCTGG
CTCAGTGGATATCGTGCGAGCCACGCGTGTACCACCAAAGACCCGTACGA
CGATGGATCCAAGCACGTCAGGCGGAAGACGGCATCAATCAAGTCAAGAT
GCCCGACACCCAAAGTTGAGATCATACATACATATATTCATACGTGTTCG
TCAATCGTGTCCGCAAATCAAGTACATAGATGCATAAAGAGTAGACCGAC
CAACTGTTAAAGAACGCAGAGAGACGCTCTAGAGTAAACCAAACCTTATG
TAAAATACGGATACGTAACGCAGGTGGAAGACGCTCTCAGCGGCGTGGTG
CTAGAGAAGAGCCTGGAGACCAGGCTTTCGAGGGTTGCGCAGTCGACGTT
CAACACCAAGCGGAATAACGCCCCCTTCCAACACCTGCTCCTGTATGGTA
AGCTGCGGCTAGCACCGCTGAGATACCTCTTCCGGTATTAAATAGCCAGT
GTGTACATCTTTTGGCGTTCGGTGCTTGTGCTGTGTAAGAAGTATCGACG
TTGGCGGTGTTTTATTTATTTACTGGCTGTGCGTTGGTATGGGGACTACT
GCTGTGTAAGTGGTTTCAAGCGGTGGTCCGCTCGTGAGTGTTTTTGCCTC
GATTTGCTGGGTCTGGTATTTTTGCGCCCTCGACTTTCCAACTCCCAAGC
AGAAGAGCGCTTGTGTCGAACACCTCTCGCTTCGAGTTTGGTGACGCTGT
TTACTGCTGCTGTGTTAGGCTACCGTAGGTGACACAAGATACCACCCCCC
CGGACATATTTTAAAAGTTGGATTCCTCTCCAGCAAGAAGAGTGCCAGTG
CCGAAAGGGGGTGGCGTTGGAAAGGTCTGTTCGAAAATGTATCGTTTGGT
GCTGGCACCCTCTTCGATACAGAGTAATCGGGGTTTTAAAATCTGTCCTG
GGGGTGTGGTATATTGTGTCACCTACGGTATAGTGGTGAGGATGATGCTG
GGGCCGCTTGTTTATGAAAACGTTTACCTTCTGGAATAGAGGGGCCGATA
GTCGAGTTTAGTGGTTCGATCTACAGCTGCTGTGTGCAGCTAAAATAGTG
ACGGTGATGCTGGGGTCGCTTGTTTGCGAAAATATAGTCTTGCATAGAAT
ATGTAGAGGAACGCCGATAGCATAGGCCTTGTTTAGCACTTAAGTCCGCC
TTGGTTGTTATCCTTGCTCCCTGCCCAGTTTCTTCTTTCTGTCACTGCTG
CAGCTTCGGCCACCCGATGTTTCGAAACCATTTTTGCTTTCGCTGTCCGA
TGATGGCGGAGTTTTCCGAGTTGGCCAGCATGAAAGTCGAACGCCGACGG
TATCAACAACCAACCCAAAGCAGCAGTATCAGCAGTGCCAGTATTTACTG
CATTACCTGATGGGCTTGTTACCCAAGCAGCAGAACCAGTAGTGTCAGTG
TACTCACCTCAAAATACATGTACTCTTATGAAGAGTTGTTTTCTCGCCCC
GTGTACTTTTTTGGCATCGGGGTGACAAACCCTCTAACCACGCGCTAAAC
AAAGGTGGGTCTCTCCCCGGGGTATCTGCTGGTTGGCCTGTCAGAGTTGT
GCAGGGGAAGTTTTGGATTTTTCTGTTACATAACATGTTGGGTGTTTTTG
TTCTCGGCGGGACCAATACCTCTTCACTACGATATTACTGCTCTATTGGA
CCGTTAATTCACCACGGAGCTCCGTCTCTAATGTGAGGAGATTCTTCTTG
CGATTTCCTGATTTCTTGAAAAAAAAAAACACAGGACCGCCGGGGGCCGG
TAAGACGCTCTTCGCCAAGGGCCTGGCACGCCACTCGGGCCTGGAGTACG
CCATCATGACTGGCGGCGACATCGCGCCCCTTGGGAGGGACGCCGTGACG
GAGATGCAGAAGGTCTTCGACTGCGCTCAGGTATTGCTCTATCTATGTAC
AGAGGCTCCGTTTTGTTTTTTGCCGTTTCCCCGTGGAATGTATGTGTAGT
CCGTGGATGTAGCGTATCATTTTCTCTTTTGCTGCTTTTGCCCGTGAAAT
GTATGTAAATTATGAAGCGTAATACGTTTTGTTTGTTTTGCGCTAAAATA
TGCGAATACCACGAGCAGAAAACATTGTATGTGGCGCTTAAAAGTGCGTT
CCGTATCCCACGCTTTGGCAGTCTCACTTCTACCACTCATTTCCCCTACC
TTGATTTCCCTCTTAAGTTTTTTTTTTGTGTGTTGACGGTGTGCATATAT
ACATACATATAGGCATGAACCGAAGACGGAGTGTGTTTTGGGTTATATTG
TACTGAGAACTGAAGAGATTGATATTTAATCGTTTGTGCCTGCCTGCCCG
TGCCCGTGCCCGTCTGTCCGTCTATCTGCCCGTCTATCTGTAGGCGAGCC
GCAAGGGCCTTTCTCTTGTTCGTCGACGAGGCGGACGCGTTCCTAAGGCG
GCGCAACACGGAGACCATCAGCGAGGACCTCCTCAACGCCCTGAACGCCT
TCCTCTACCGCACGGGAGAGTCCACGGTGAGAGCTACATACGGCAGTTCG
CTCCTCCCATCGCATCACATCACAGCGTGCATGAAACGCGAAAAAAAGAC
ATTCGAGACGCCCTTGTATCACTGCTGTATCGTGGTGGTGAAGCTGTGGT
GGTTGGAGAGTCTGCGTATAGTTTTGGTCCGTTGTACACCTGCATCACGT
TACGGTTGCGGTGGAAGGAAGTCCATGTCCGGCTAGGAAGCCAGTAGTGA
TAATAGACAGTCATGTATGTCACTGGACTGTCGGGCGAACATTCACGCGT
ATGTCCATGTTCAGGGTGCCGAAAAACGGCTTCATCTTCTTCTTGCTCTC
GGTTGCCGTCCTTCTTATTGTCTCTCTCACCCCTCTTCGCCCTCCCCACG
TCCACATTCCTGTCTTGCGTCAGATGTGCCCATTTTGCCGTCAACGCAGC
ACGTAATGCTTACGTTTATTCGTCCGTGCCGCTTTGTCTCGTTTGTCTCG
TTTCCTCTTTCTTGTGGGGTGTGCTGCACAAACGCCATGTGATTCCATAC
ATACACCGCAAACGCGCACAGGACAAGTTTATGCTGGTGTACGCGTCGAA
TCAGCCGGAGCAGTTCGACTGGGCGGTAAACGACCGGATCGACGAGATGG
TGCCCTTCGGCCTCCTCGGCCGCGAAGAGCGGCTGCGCATGGTGAACTTC
TACATGAAGATCTACCTCCTGGACCCTCCCGGCAGGGCCAAGATCATCAC
GATGGACGGGGTGGCGGTGAGAAATAGGAAACCAAGCGTCACGCACGCAC
GCGCACGCGTTCAGCGGATGTGGACTGATCGTGACTTAATGCTTCGTGTG
ATGTGTATTTATGTAAACATATACTTCGAAGTAGCGTACGAGTTTGCAGT
TTTCCGCGGGCATTATGTATGTTGGCGTTCGATTTTTTGACGTCATATAT
ATGGAAAGGATTGTTTGGACATCATTCTTGTATGAATCGAGACATCAGGA
ATTGCGTGTGGAGGAGGTGTGTTGAGGAGACCTATCCAACGATCTCAAAT
CTTCGTGGAGCCCCTCCAAAGTGAGCACTTGGCGCCTGCTTCATGGGGAG
ATTGGCTGTCGCCGTTGCCTACTTTTCAGCGCACGCCTGCCAGAAGGATG
GCGCTTTACAATACTCGGATGAAGTCCGATCGAGAATCACAGAGCGGGGG
GGGAAGGGGGGGGTGGGGTTGAACGGTTCCGGCGAACAGAACCCACACAA
GTGCGTTTTCGTCTGGAGGCGCTTGGTTTGCCATCCTATCCTGTGCTGGA
GCTCTCCTTTTACATTTTTCTCAGTGGATGTTGGATCACACGCGCGCATG
TAAATAGCACCATCGGCGCGGCACACGCAGATTTCGGTATTTTACTCGCG
ACCCTCCTGTTGCTGCGGTCGTACACCATACCAGCCGAGAGATCGGTGTA
TTTGCTGCCACAGGTCTGTCTCCGTGTTTGCGAATACTCAGATTTCGATC
ACGCGCACGCGCGCTGTGTCTCTCTGTGTGTTTTGTGCTTTTATATTTTT
GGCCTTTGATGTTTTGGCATCCGCCGTGCGTGTTGTCGATTCTCCGCTGC
CCGATGTATGTACCCCTCGGTTCGTCTCTCCATCTGCCGTGCCGCCCCAC
AGCACTCTCACCTGCAGGAAGTGGCGGACCTGACGGAGGGCTTATCGGGG
CGAGAGATCGCCAAGCTTGCCATCGCGTGGCAGGCGGCGGCGTACGGCAC
GAGCGACTCCTCCTTCACGGCCGAGCTCATGACGGAGGTTTTGGATGTGC
GTCTACTATTTGCGTACTTCCGAAGTACATGTGTGTGTGTGTACATACCT
ACCGTGCACGACACAAGATAACGCAGCCCCTGGACCGATTTTCAAAGCTC
GTTTACTCCGCAACGAGTTACTATTCTCATACCAAACGACGCGTTTGCGG
ACAGCTCTTGATGAGATCTTCCCAACGCCGCCCTTTTCGGGACTGATGGC
ACTCTTCTCGCTGTTGCCTTTGTGCTATAAATATGTAGTAGCATATATTC
CCACTTGGTCAACTATTTTCAGTTGGCAAGACGCCGACCGCGCTGATAGG
CTGACCAGCGACAGCATGGCTGCGGATCGACGGCCGGTCCTCTGTGGCTT
TGTGGTTGTGGGAGTAGGTGAAACAGACGGTGGAGACTATGGAGAGGGTC
AGAACTGTGCCACGTGGTCCCCCCGTGGAGTTTTCCACGCGTCCGAAATC
GTGATTTATACATGCATACGTAGAGCAGCTACCGGGATTTCTCGCGCGAT
TGGGTCTACCACTTTCCCTTGTTTTCCCCTTGCCCCTCTTACCCCCGTGC
CAACCGCCGTGTACCTACCGTCGCTGCTCGATCCAGGCGCACCTGCAGCA
GAAGAGACAGAAGCAGGCGTGGCTCGAGGGGGCGCAGACCAGCTCGGGGG
GTTGATTATGCCCACCCCCCACGCTGAGCGAATGACCCCGCGGCTGATTC
GAACGCTCACGCAGGACGCAGAAGAGGGCGTCGTAGGCGGGTCAGGGGAG
GCGTCGGGGAAGCCCCGTGGGACTAGCTAAGTACAGGGTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6823:361..6751- >mRNA_L-elsbetiae_contig6823.15582.1 ID=mRNA_L-elsbetiae_contig6823.15582.1|Name=mRNA_L-elsbetiae_contig6823.15582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2454bp|location=Sequence derived from alignment at L-elsbetiae_contig6823:361..6751- (Laminarionema elsbetiae ELsaHSoW15) ATGCAGGAGTTCCTGAGCGATAAGGATCAGATGGTGGCGGCGACGGCCAC CCTGACGGCCATGGCCCTGGGGATCTACACCGCGAGAACGGGGACAGATG CAGGAGTTCCTGAGCGATAAGGATCAGATGGTGGCGGCGACGGCCACCCT GACGGCCATGGCCCTGGGGATCTACACCGCGAGAACGGGGACAGGTCCCG CTTTTCTGACTCAACCGTCCCCGCCCCCCAACACTACTTTTCCGTGTCGA AACCTGGGTGTGGCCGGGCGATACATCGAGGCCAGGCTTGGCAAGCCGCC ACTCTTGCGAGAAACTTCCAGGCCAACGTCCTTCGAGACGGTCCGCAACC CGGTTCCCACCATCAAGCGCGCCTTTGGCATGCATAAGGTCCCGCTTTTC TGACTCAACCGTCCCCGCCCCCCAACACTACTTTTCCGTGTCGAAACCTG GGTGTGGCCGGGCGATACATCGAGGCCAGGCTTGGCAAGCCGCCACTCTT GCGAGAAACTTCCAGGCCAACGTCCTTCGAGACGGTCCGCAACCCGGTTC CCACCATCAAGCGCGCCTTTGGCATGCATAAGGTGGAAGACGCTCTCAGC GGCGTGGTGCTAGAGAAGAGCCTGGAGACCAGGCTTTCGAGGGTTGCGCA GTCGACGTTCAACACCAAGCGGAATAACGCCCCCTTCCAACACCTGCTCC TGTATGGTGGAAGACGCTCTCAGCGGCGTGGTGCTAGAGAAGAGCCTGGA GACCAGGCTTTCGAGGGTTGCGCAGTCGACGTTCAACACCAAGCGGAATA ACGCCCCCTTCCAACACCTGCTCCTGTATGGACCGCCGGGGGCCGGTAAG ACGCTCTTCGCCAAGGGCCTGGCACGCCACTCGGGCCTGGAGTACGCCAT CATGACTGGCGGCGACATCGCGCCCCTTGGGAGGGACGCCGTGACGGAGA TGCAGAAGGTCTTCGACTGCGCTCAGGACCGCCGGGGGCCGGTAAGACGC TCTTCGCCAAGGGCCTGGCACGCCACTCGGGCCTGGAGTACGCCATCATG ACTGGCGGCGACATCGCGCCCCTTGGGAGGGACGCCGTGACGGAGATGCA GAAGGTCTTCGACTGCGCTCAGGCGAGCCGCAAGGGCCTTTCTCTTGTTC GTCGACGAGGCGGACGCGTTCCTAAGGCGGCGCAACACGGAGACCATCAG CGAGGACCTCCTCAACGCCCTGAACGCCTTCCTCTACCGCACGGGAGAGT CCACGGCGAGCCGCAAGGGCCTTTCTCTTGTTCGTCGACGAGGCGGACGC GTTCCTAAGGCGGCGCAACACGGAGACCATCAGCGAGGACCTCCTCAACG CCCTGAACGCCTTCCTCTACCGCACGGGAGAGTCCACGGACAAGTTTATG CTGGTGTACGCGTCGAATCAGCCGGAGCAGTTCGACTGGGCGGTAAACGA CCGGATCGACGAGATGGTGCCCTTCGGCCTCCTCGGCCGCGAAGAGCGGC TGCGCATGGTGAACTTCTACATGAAGATCTACCTCCTGGACCCTCCCGGC AGGGCCAAGATCATCACGATGGACGGGGTGGCGGACAAGTTTATGCTGGT GTACGCGTCGAATCAGCCGGAGCAGTTCGACTGGGCGGTAAACGACCGGA TCGACGAGATGGTGCCCTTCGGCCTCCTCGGCCGCGAAGAGCGGCTGCGC ATGGTGAACTTCTACATGAAGATCTACCTCCTGGACCCTCCCGGCAGGGC CAAGATCATCACGATGGACGGGGTGGCGCACTCTCACCTGCAGGAAGTGG CGGACCTGACGGAGGGCTTATCGGGGCGAGAGATCGCCAAGCTTGCCATC GCGTGGCAGGCGGCGGCGTACGGCACGAGCGACTCCTCCTTCACGGCCGA GCTCATGACGGAGGTTTTGGATCACTCTCACCTGCAGGAAGTGGCGGACC TGACGGAGGGCTTATCGGGGCGAGAGATCGCCAAGCTTGCCATCGCGTGG CAGGCGGCGGCGTACGGCACGAGCGACTCCTCCTTCACGGCCGAGCTCAT GACGGAGGTTTTGGATGCGCACCTGCAGCAGAAGAGACAGAAGCAGGCGT GGCTCGAGGGGGCGCAGACCAGCTCGGGGGGTTGATTATGCCCACCCCCC ACGCTGAGCGAATGACCCCGCGGCTGATTCGAACGCTCACGCAGGACGCA GAAGAGGGCGTCGTAGGCGGGTCAGGGGAGGCGTCGGGGAAGCCCCGTGG GACTAGCTAAGCGCACCTGCAGCAGAAGAGACAGAAGCAGGCGTGGCTCG AGGGGGCGCAGACCAGCTCGGGGGGTTGATTATGCCCACCCCCCACGCTG AGCGAATGACCCCGCGGCTGATTCGAACGCTCACGCAGGACGCAGAAGAG GGCGTCGTAGGCGGGTCAGGGGAGGCGTCGGGGAAGCCCCGTGGGACTAG CTAA back to top
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