mRNA_L-elsbetiae_contig6803.15567.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6803.15567.1
Unique NamemRNA_L-elsbetiae_contig6803.15567.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6803.15567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6803contigL-elsbetiae_contig6803:2257..6769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size491
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6803.15567.1prot_L-elsbetiae_contig6803.15567.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6803 6420..6740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.088404-UTR-L-elsbetiae_contig6803:2256..23891622816754.088404-UTR-L-elsbetiae_contig6803:2256..2389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6803 2257..2389 -
1691683788.1790116-UTR-L-elsbetiae_contig6803:2256..23891691683788.1790116-UTR-L-elsbetiae_contig6803:2256..2389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6803 2257..2389 -
1622816754.1024413-UTR-L-elsbetiae_contig6803:6411..64191622816754.1024413-UTR-L-elsbetiae_contig6803:6411..6419Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6803 6412..6419 -
1691683788.1893573-UTR-L-elsbetiae_contig6803:6411..64191691683788.1893573-UTR-L-elsbetiae_contig6803:6411..6419Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6803 6412..6419 -
1622816754.12908-UTR-L-elsbetiae_contig6803:6740..67691622816754.12908-UTR-L-elsbetiae_contig6803:6740..6769Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6803 6741..6769 -
1691683788.2102773-UTR-L-elsbetiae_contig6803:6740..67691691683788.2102773-UTR-L-elsbetiae_contig6803:6740..6769Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6803 6741..6769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.1166801-CDS-L-elsbetiae_contig6803:6419..67401622816754.1166801-CDS-L-elsbetiae_contig6803:6419..6740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6803 6420..6740 -
1691683788.198827-CDS-L-elsbetiae_contig6803:6419..67401691683788.198827-CDS-L-elsbetiae_contig6803:6419..6740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6803 6420..6740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6803.15567.1

>prot_L-elsbetiae_contig6803.15567.1 ID=prot_L-elsbetiae_contig6803.15567.1|Name=mRNA_L-elsbetiae_contig6803.15567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MRWASITRIRRRPARSVVELGGTEDSEEYYRWALLVLGKILDAYHLNVGS
KHPGTKSGVLSAWKLRGTKEFKGYLGRTLAIPEEALVVGHRGEAIAPNAR
RAFAAA*
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mRNA from alignment at L-elsbetiae_contig6803:2257..6769-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6803.15567.1 ID=mRNA_L-elsbetiae_contig6803.15567.1|Name=mRNA_L-elsbetiae_contig6803.15567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4513bp|location=Sequence derived from alignment at L-elsbetiae_contig6803:2257..6769- (Laminarionema elsbetiae ELsaHSoW15)
CGAACCGAGCCCTTTCCCGATTCGGGAGAATGCGTTGGGCGTCAATCACC
CGGATTAGGAGACGCCCTGCAAGGTCTGTTGTGGAGTTGGGGGGGACGGA
AGATTCCGAGGAGTACTATCGATGGGCGCTCTTGGTTCTGGGGAAAATAT
TGGATGCCTATCACTTGAACGTCGGAAGCAAGCATCCTGGTACAAAGTCG
GGTGTGTTGTCTGCTTGGAAATTGCGGGGAACGAAGGAGTTCAAGGGGTA
TTTGGGGCGAACCCTCGCGATTCCGGAGGAAGCGCTGGTCGTTGGCCACC
GGGGCGAAGCAATCGCCCCTAACGCTCGGCGTGCATTCGCGGCAGCTTAG
GCAAAAGGGTGAGGCTGGAAGTATTTTCGGTCAGTTGCTTGGCGTCAGAG
AGAGGGAACTTGGCGCTGGCAAATCCACCTCTGAAGGAACAATTTCGACG
ACCGCCGTACTCCTGGCGGGCACTTTGTTGTGTGCGTGTCTGTGTGTATC
TGTGTGTGTCTGTGTGTGTCTGTGTCGTGTGTGACATTTTATGCCGCAAA
TCGGAGGTGAAACCATATTATTCTTAGAGGCGGCAAGCTCGCCGACCGTT
CTGCTAAAAACACATAATCAAGAAAACGAGGCTCATATTGTTCAAAAGTT
GGGAAATAACCGAGGCTTGACATCTGCTGCAAGATAGGAGTACGAGGTAC
GTCTTCGGGTGAGTTGCCACCTGGCGACCCCACCACCACGGCTTGGCCCA
TGTACGCCAAATATCAATTTCCCTTAAGAGTTGACAGTAAATAGTGTCAC
CAGGGATCGCCGTGGAACTTTCTGCCCCCCCCCCCCCCCCTCTCGAGGAA
TACATAGAAAAAAAAACAAGAAAACAGCAGTAGGCAGCAGGGCGGTGGGC
GTGGCTGACCGCACTGGTATTTAGGGGCACATTTTTAAGACGGACGCGGC
GACATTGCTCAACACCAAAAAACGAGTCGAGGCAAGCTGGAGTACCACGG
GGCGTAATGATTACGGAGCAGTTTGGACTGCTGCAAGCAGAGCATAACAC
GTGGGAGTCACAGAGCAGATGCTCGTCTCCTTCAACCGCAAAACGACCGA
CGACGACGTTAGATACGGCAAGCACCTGTTCCAGAAGACGGGGCTAGCGA
TGATAGCGATCGGTAGCGACGACGGCCTCATCAACCTTGAAGGCGTACCG
ATAGGCGCGTACTCGTTCATGGGCGTGGACACATGGGCATCACCCCGGAG
CCGCAAGAGGACGTGGGTCCAATCGCACCTGCTCCCGCTGACGAGGAACA
TCCGCTGGGTTCGAGCGACGAGGATGGCCGGTACGGCGAGGAACAACAGG
CAGATCGTCAGGGCAAGAGACGAGGTGAAGACGCCGGGGAGACCGCCATC
TTGGGAAGCAATGACGATCTTGCCGATGGCGAGGTGCCCCTGCCACTTAC
TCCAGATCCCTAGCGGATATATGCCCTCGTGAGCTCGGCGCCTATTGCCC
CCACCGCAGCCTTAGAGAAGCAATCGATGCTGCCGCATGGTGCGGGCTGG
CCCGGTGGGGTCATCACGCCACAGATTTAAGCGCGCACATACCACCTCTA
CGATTTCGGGGTTTGCATCGACAGCAACGGCAGCACGACGCAGCATGAAG
CCGCCTCTGGAAAATTACTCTATAGATGGATGGGGCCGCGGAAGTGCGAT
CTTGAGCGCTGCTCAGTCATTGTGAGGGTGTTCTCGAAACTAGCGATGAC
AAGAGCGAGGAGTATAGGAGAAGTTCGAGGAAGAGGGCTCTGGGGAGGGC
ACAGGGGCGGGAGGTTGGGGTGGTATGTATTGACTCGGAGGAGAGCACGG
GGGGTATAGGGCAGGGGTGGCACCGCCAGTAGCCTTCGCAGAGTTGTCTT
CGACTAACAAAGTATAGGAATCGGGAAAGCGGGTCGGGGTTTTGGGTTAG
GGTTACGGTTACGGAGCCCCCGTCTCTCCTAGGATGGAGTTTTTTTTTCA
CGCAGGTGGTGTGGCACCGGTGTTCCCGAGAGCTGATTCTGAAGATAGTT
GGGCGAGCGAGGATGGTATGTAGCAGCAGGGGTGGACTGTGGATGGGGAG
GCTATTTAGGAAGTGCAAGCGCAGCGTGCGCCCGCAAGACCAGTTGGGAG
GTTTTGGCGAAGGAAGACTATGTGTGCCGTCAGTACCACGCATGGTCCCC
TGCCCGTGCTGTTGACGCAGGAAACAGAACGAGAAGCAGAAGAAGGGCAG
TCCTAAACTTAGCGCGAGACATAACAAAAACACGTTCAAGAAAACAAGTA
TTTTCTGAATGATGGAAAATCAGATGCTCCAAATGCCGCGAGGCGTTGGG
TCTTATCTATTGAAGTCGTTGTGTCATTCGCCGGTTGGAGGAGGTTCTAG
ACTGGGGCACGGCATTTGAAACAGACTACCCGGCAAAAGTGCGACGGTTG
TTTATCCGTCACAGGTAGACGAGCGGAATTCAAAACTGCACTACGAGAGG
TGAAGGTAGAATACAAAGCACGCTGTGTCAAGGATAGGAACCTGAACTCG
ACAATGTGCTGTGTGTACCAAGATTTGCGCACGACATGAATTGATCAATC
AAGCTCCGAGCACAGAGTCATTTGCGCACAATAAAATATGTTCACATGCA
GAGAAAGGAAAACGGACAAACGAAAAAGGACACTTTTCAACCCCAAAAAA
CAGGCTGGTTCTGGCTCGGGTTCAATAATTTGAGTGTTTTTTCAGTTATT
TAAAATAATTAGACCAAAGCGTGATAATTGTAAGAGAGACACGAGGAGAG
GGGCGAAAGGCGTCGAGCAGCTTCGAAATGCGGGTGTTCGAGCGAACCGA
CGCATTACAAGGCGAGGCTTGCGAGAGCCGAAACCCGAAGGAGGACATCA
ACCGCACAGGGAAATAAATCACAGCGCACGCCCCCCACCTACCCAGCCAA
TCAAGAAGGTGCTTCTCCGCCGAGACCCTTGCCTTACGGCAGGAATCAGC
GATGAGGGTTCCAGCGTGCTGGGGTGGTAATACCACCCCAACGCGGTCTG
GGAAAGGCGCAGTCGAGAAATCACTCTCGATTAGCCCGGAGCTGGATCAG
CCTGCTCTAAACACCCTGAGTCCCACGCTGAGGCACAAGAACGAGACCCT
GTCAAGGGGAAAGACTTCCAACCACCCAAGCCAGACGTAGTAGATCTCGC
AATCCTTCTCAAATCCACGGAGCCTTGCGTACCCCCTCAAAGGGCCAATA
CGCGAGTAAGCAACCGCCCTTTTCGCAACCTAGGAACGAACCCAAACACA
TCAAAAGCCGAACCTAGCAAGGGGTAGGATGTAGGACAAGATCAAAGCAT
GGGCCATTGAAATCGGCACGTGGAGCGTCACCCGTCGTGGCCTCACCCCC
AAGCGGCCAAACATGGGAAGGAACGACGACCATTGGATGAATCCCGGGGT
CTGGGGTATTGGGAAAGCTTGCCGGCGAAAATGAGGGAACGGACCCGTCT
CTCCCGCTCCTCTGCTGATGTTCCTGTCCTCCAGCACTCCTGCCGCGCCG
AAAGCTTCTCGCCATGCAACGAAATGGAGCGTTGGTGACCCTGCCTGCTG
CAGCGTTGGTGGTTCGGAGGGGTAGCGCGTGGAGAGAGGTGGGCGGTTGG
TTAGACTGGAATGGGAGAGTCGAGGTTTGGAGCAACCATGAGGAGGCAGG
GAGATGTGTATGACGGCAAGGCGGGTCGAGGGCGAAATGCATAAAGAAGG
GCTGCATCGCGAAACTTGCTGGTTATGGGAGCTTCCGCGACGTGGTTTCT
TCTGACGGGGCCCTTTCCAGAGGAGCCCATGGCTTAAGATGTAACATTAT
CGTGGTTGTCTGCACCAGGAACACGATACGCGTCCTGCTGCAAAACAAGA
GCGCTCATCTTCGTGTTGCACGTCATGATTGGTACCATATCTGCCAAAGA
TGCTTTTCATGAAAAGCGGATATGTATCCGTATGTTGTTTGTCACACGAG
AGGAAAGGGGAGAGCTGGCTGTTGTTGTGGCACGTTACTTCCGTACGGCG
AACAGGGAACCGTTTTCCTGGGGTGCAGTCACTTTCTCCACGACCAGCTG
GCCTAAATGCGCATCTGCGCCCGTCGGTGCAACGTAAGCAGTGCTGAATA
TCGACAGAATGCATGAGTGGGGAGGTCAATGACAGAGTATTTACCAACGT
CGTCGAAGCAAATCACAGCGCGAATTGCAACACACGTGTGACCCACGAAG
CTTGCTCCTGCCTTGAGAAAGCAATAAGCGCGAGGGAAACACCGGGTACA
GCATTATCTGAAAACACGAAGACCCCCCCCCGTTTCTGCCGCACAATGTA
TCGTACCTGTTTCCTCCATTCCTTGGCAAGGTACGAGCTCGGCGCAGGTA
GAGGAAGAGGAAAAGGCCAAGTAGAAGCAGGGTGTCGACGCGGGAGAAGA
AGGGTCCATGGAACTACAGTAGCAGCACGGCGACGCAGCAACGGGGAGAG
CGACGAAGTTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6803:2257..6769-

>mRNA_L-elsbetiae_contig6803.15567.1 ID=mRNA_L-elsbetiae_contig6803.15567.1|Name=mRNA_L-elsbetiae_contig6803.15567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig6803:2257..6769- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTGGGCGTCAATCACCCGGATTAGGAGACGCCCTGCAAGGTCTGT
TGTGGAGTTGGGGGGGACGGAAGATTCCGAGGAGTACTATCGATGGGCGC
TCTTGGTTCTGGGGAAAATATTGGATGCCTATCACTTGAACGTCGGAAGC
AAGCATCCTGGTACAAAGTCGGGTGTGTTGTCTGCTTGGAAATTGCGGGG
AACGAAGGAGTTCAAGGGGTATTTGGGGCGAACCCTCGCGATTCCGGAGG
AAGCGCTGGTCGTTGGCCACCGGGGCGAAGCAATCGCCCCTAACGCTCGG
CGTGCATTCGCGGCAGCTTAGATGCGTTGGGCGTCAATCACCCGGATTAG
GAGACGCCCTGCAAGGTCTGTTGTGGAGTTGGGGGGGACGGAAGATTCCG
AGGAGTACTATCGATGGGCGCTCTTGGTTCTGGGGAAAATATTGGATGCC
TATCACTTGAACGTCGGAAGCAAGCATCCTGGTACAAAGTCGGGTGTGTT
GTCTGCTTGGAAATTGCGGGGAACGAAGGAGTTCAAGGGGTATTTGGGGC
GAACCCTCGCGATTCCGGAGGAAGCGCTGGTCGTTGGCCACCGGGGCGAA
GCAATCGCCCCTAACGCTCGGCGTGCATTCGCGGCAGCTTAG
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