mRNA_L-elsbetiae_contig680.15562.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig680.15562.1
Unique NamemRNA_L-elsbetiae_contig680.15562.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig680.15562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig680contigL-elsbetiae_contig680:13507..14093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size587
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig680.15562.1prot_L-elsbetiae_contig680.15562.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig680 13537..13917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.5757813-UTR-L-elsbetiae_contig680:13506..135361622816753.5757813-UTR-L-elsbetiae_contig680:13506..13536Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig680 13507..13536 +
1691683787.7708983-UTR-L-elsbetiae_contig680:13506..135361691683787.7708983-UTR-L-elsbetiae_contig680:13506..13536Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig680 13507..13536 +
1622816753.6004422-UTR-L-elsbetiae_contig680:13917..140931622816753.6004422-UTR-L-elsbetiae_contig680:13917..14093Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig680 13918..14093 +
1691683787.813472-UTR-L-elsbetiae_contig680:13917..140931691683787.813472-UTR-L-elsbetiae_contig680:13917..14093Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig680 13918..14093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.5893996-CDS-L-elsbetiae_contig680:13536..139171622816753.5893996-CDS-L-elsbetiae_contig680:13536..13917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig680 13537..13917 +
1691683787.7888055-CDS-L-elsbetiae_contig680:13536..139171691683787.7888055-CDS-L-elsbetiae_contig680:13536..13917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig680 13537..13917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig680.15562.1

>prot_L-elsbetiae_contig680.15562.1 ID=prot_L-elsbetiae_contig680.15562.1|Name=mRNA_L-elsbetiae_contig680.15562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MVAAVAAHNHKTGMTTFKYPCCTSGSPSFPPGCHKVQRVLCTRFSRKTLS
LDLQRIYKPAVGTRPKTFSRAQSPGLPFRRTQVTVTASISVSYSYSSVDL
HDGYLFSLHALTGARWGFFGVLTACR*
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mRNA from alignment at L-elsbetiae_contig680:13507..14093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig680.15562.1 ID=mRNA_L-elsbetiae_contig680.15562.1|Name=mRNA_L-elsbetiae_contig680.15562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=587bp|location=Sequence derived from alignment at L-elsbetiae_contig680:13507..14093+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCTTGCTGGGACACCGCCCCTCCCGCGCATGGTGGCCGCTGTTGCTGC
GCACAACCACAAGACTGGCATGACAACCTTCAAGTACCCCTGCTGCACGA
GCGGCTCCCCAAGTTTCCCCCCGGGGTGTCATAAAGTGCAGCGTGTTCTG
TGTACCCGTTTTAGTCGGAAAACGCTTTCTCTCGATCTGCAGAGAATTTA
CAAGCCGGCTGTAGGTACGAGGCCAAAAACGTTCTCACGCGCACAATCTC
CTGGGCTGCCATTCCGCCGTACTCAAGTTACAGTTACAGCGTCAATTTCA
GTAAGTTACAGTTACAGCAGTGTAGACCTGCATGATGGTTATTTGTTCTC
TCTCCACGCGCTAACGGGGGCGCGATGGGGCTTCTTCGGCGTCCTTACCG
CATGTAGGTGACACCAGATACCACACCCCCTGGACAGATTTTCAAAGCTC
GATTCCTCCCCAGCAAGAAGAGTGCCAGTGCCGAAAAAGTGTGGCGTTGG
AAGTATCTAGTCGAGGGTTGTCCGAAAAAATGTTGATTAGTGCTGGCACC
CTCTTCGTAACGGAGTATTGGAGCTCTGAAAGTCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig680:13507..14093+

>mRNA_L-elsbetiae_contig680.15562.1 ID=mRNA_L-elsbetiae_contig680.15562.1|Name=mRNA_L-elsbetiae_contig680.15562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig680:13507..14093+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGCCGCTGTTGCTGCGCACAACCACAAGACTGGCATGACAACCTT
CAAGTACCCCTGCTGCACGAGCGGCTCCCCAAGTTTCCCCCCGGGGTGTC
ATAAAGTGCAGCGTGTTCTGTGTACCCGTTTTAGTCGGAAAACGCTTTCT
CTCGATCTGCAGAGAATTTACAAGCCGGCTGTAGGTACGAGGCCAAAAAC
GTTCTCACGCGCACAATCTCCTGGGCTGCCATTCCGCCGTACTCAAGTTA
CAGTTACAGCGTCAATTTCAGTAAGTTACAGTTACAGCAGTGTAGACCTG
CATGATGGTTATTTGTTCTCTCTCCACGCGCTAACGGGGGCGCGATGGGG
CTTCTTCGGCGTCCTTACCGCATGTAGGTGAATGGTGGCCGCTGTTGCTG
CGCACAACCACAAGACTGGCATGACAACCTTCAAGTACCCCTGCTGCACG
AGCGGCTCCCCAAGTTTCCCCCCGGGGTGTCATAAAGTGCAGCGTGTTCT
GTGTACCCGTTTTAGTCGGAAAACGCTTTCTCTCGATCTGCAGAGAATTT
ACAAGCCGGCTGTAGGTACGAGGCCAAAAACGTTCTCACGCGCACAATCT
CCTGGGCTGCCATTCCGCCGTACTCAAGTTACAGTTACAGCGTCAATTTC
AGTAAGTTACAGTTACAGCAGTGTAGACCTGCATGATGGTTATTTGTTCT
CTCTCCACGCGCTAACGGGGGCGCGATGGGGCTTCTTCGGCGTCCTTACC
GCATGTAGGTGA
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