mRNA_L-elsbetiae_contig6798.15554.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6798.15554.1
Unique NamemRNA_L-elsbetiae_contig6798.15554.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6798.15554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6798contigL-elsbetiae_contig6798:7912..8415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6798.15554.1prot_L-elsbetiae_contig6798.15554.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6798 8061..8396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.7561429-UTR-L-elsbetiae_contig6798:7911..80601622816752.7561429-UTR-L-elsbetiae_contig6798:7911..8060Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6798 7912..8060 +
1691683787.1038637-UTR-L-elsbetiae_contig6798:7911..80601691683787.1038637-UTR-L-elsbetiae_contig6798:7911..8060Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6798 7912..8060 +
1622816752.7809482-UTR-L-elsbetiae_contig6798:8396..84151622816752.7809482-UTR-L-elsbetiae_contig6798:8396..8415Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6798 8397..8415 +
1691683787.1341646-UTR-L-elsbetiae_contig6798:8396..84151691683787.1341646-UTR-L-elsbetiae_contig6798:8396..8415Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6798 8397..8415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.7688909-CDS-L-elsbetiae_contig6798:8060..83961622816752.7688909-CDS-L-elsbetiae_contig6798:8060..8396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6798 8061..8396 +
1691683787.1170104-CDS-L-elsbetiae_contig6798:8060..83961691683787.1170104-CDS-L-elsbetiae_contig6798:8060..8396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6798 8061..8396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6798.15554.1

>prot_L-elsbetiae_contig6798.15554.1 ID=prot_L-elsbetiae_contig6798.15554.1|Name=mRNA_L-elsbetiae_contig6798.15554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MPIGRLPLMNHTAELPMTFHALRSSFSRNRHAWSPYLGGRAGCGAMPVTV
TSSPSMSATPPPAAVPDPLARRSSSSACTWRIVALRFSSWSCRSSICSRP
RAVASRRSASS*
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mRNA from alignment at L-elsbetiae_contig6798:7912..8415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6798.15554.1 ID=mRNA_L-elsbetiae_contig6798.15554.1|Name=mRNA_L-elsbetiae_contig6798.15554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig6798:7912..8415+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGGGTGTTGGAGGTGGTGTGATCGTCCTTGACGGCGGTGAATTGCCTG
ACATCGATCTGGGACAGTTCGTTGAGGGTCGCGCAGACAGAAGCCGAAGG
GTTGACGCTGTTTGAAAGGTGAGACGCGAAGTTTTGCGGAGTGAGCTTGA
TGCCCATCGGCCGTTTGCCGTTGATGAATCACACCGCGGAGTTGCCGATG
ACGTTCCATGCCTTGAGGTCCTCTTTCAGCCGGAACCGCCACGCCTGGTC
TCCGTACCTGGGGGGCCGCGCCGGCTGTGGCGCCATGCCAGTGACGGTGA
CCTCGTCTCCCTCCATGTCGGCCACTCCGCCCCCCGCTGCGGTACCCGAC
CCGCTCGCGCGAAGGTCGTCAAGTTCAGCCTGCACCTGGCGAATAGTCGC
GCTGCGGTTCTCGAGCTGGTCTTGCAGATCCTCGATTTGTTCACGACCGC
GGGCGGTGGCCTCCCGCAGGTCGGCTAGCTCCTGATGAATGGTGTCCATG
GATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6798:7912..8415+

>mRNA_L-elsbetiae_contig6798.15554.1 ID=mRNA_L-elsbetiae_contig6798.15554.1|Name=mRNA_L-elsbetiae_contig6798.15554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig6798:7912..8415+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCATCGGCCGTTTGCCGTTGATGAATCACACCGCGGAGTTGCCGAT
GACGTTCCATGCCTTGAGGTCCTCTTTCAGCCGGAACCGCCACGCCTGGT
CTCCGTACCTGGGGGGCCGCGCCGGCTGTGGCGCCATGCCAGTGACGGTG
ACCTCGTCTCCCTCCATGTCGGCCACTCCGCCCCCCGCTGCGGTACCCGA
CCCGCTCGCGCGAAGGTCGTCAAGTTCAGCCTGCACCTGGCGAATAGTCG
CGCTGCGGTTCTCGAGCTGGTCTTGCAGATCCTCGATTTGTTCACGACCG
CGGGCGGTGGCCTCCCGCAGGTCGGCTAGCTCCTGAATGCCCATCGGCCG
TTTGCCGTTGATGAATCACACCGCGGAGTTGCCGATGACGTTCCATGCCT
TGAGGTCCTCTTTCAGCCGGAACCGCCACGCCTGGTCTCCGTACCTGGGG
GGCCGCGCCGGCTGTGGCGCCATGCCAGTGACGGTGACCTCGTCTCCCTC
CATGTCGGCCACTCCGCCCCCCGCTGCGGTACCCGACCCGCTCGCGCGAA
GGTCGTCAAGTTCAGCCTGCACCTGGCGAATAGTCGCGCTGCGGTTCTCG
AGCTGGTCTTGCAGATCCTCGATTTGTTCACGACCGCGGGCGGTGGCCTC
CCGCAGGTCGGCTAGCTCCTGA
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