mRNA_L-elsbetiae_contig6798.15553.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6798.15553.1
Unique NamemRNA_L-elsbetiae_contig6798.15553.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6798.15553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6798contigL-elsbetiae_contig6798:788..2957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2170
Cds size1626
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6798.15553.1prot_L-elsbetiae_contig6798.15553.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6798 816..2441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.695771-UTR-L-elsbetiae_contig6798:787..8151622816752.695771-UTR-L-elsbetiae_contig6798:787..815Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6798 788..815 +
1691683787.0634496-UTR-L-elsbetiae_contig6798:787..8151691683787.0634496-UTR-L-elsbetiae_contig6798:787..815Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6798 788..815 +
1622816752.7218418-UTR-L-elsbetiae_contig6798:2441..29571622816752.7218418-UTR-L-elsbetiae_contig6798:2441..2957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6798 2442..2957 +
1691683787.0904925-UTR-L-elsbetiae_contig6798:2441..29571691683787.0904925-UTR-L-elsbetiae_contig6798:2441..2957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6798 2442..2957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.7091517-CDS-L-elsbetiae_contig6798:815..24411622816752.7091517-CDS-L-elsbetiae_contig6798:815..2441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6798 816..2441 +
1691683787.0765052-CDS-L-elsbetiae_contig6798:815..24411691683787.0765052-CDS-L-elsbetiae_contig6798:815..2441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6798 816..2441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6798.15553.1

>prot_L-elsbetiae_contig6798.15553.1 ID=prot_L-elsbetiae_contig6798.15553.1|Name=mRNA_L-elsbetiae_contig6798.15553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=542bp
MQSTAIEQWAGSLEDISFGDAFNECIRGVVWPTLVRKLSFGKKFNRPVDD
VVWPASLRVLSFGDAFAQPIAGDVWPASLQELSLGNAFNRPIAGVLWPDS
LQKLSLGGRFNQPIAAVVWPASLQQLSFGTFNRGFNQPISGITWPATLRK
LSFGFSFNQPIAKITWPATLQQLSFGHSFNQPLARVVWPASLQQLSFGSN
YCSAFNQPITGITWPASIQQLEFGGGFDQLITEVVWPASLQKLSVGNPPI
DDVVWPTSLQELCFGRNFNESIAGVVWPASLQQLTLGNPPINDVVWPVSL
EWLCFESFNRPIIGVAWPASLLHLAMGECFNQPIIGVVWPPSLQRLWIGG
DFNQPITGVVWPASLLQLYFGNDFNQPIAGVVWPASLQELGFSAYPTSFD
QPIVGVSWPASLVKLEFGDAFNQPIAAVGVPWPASLVTLDLGGAFNQPIA
GVVWPASLQELEFGGYRTSFNQPIVGISWPASLVKVSFGDAFNQPIAGVV
WPASLQELEFGYDKSNFDQPIVGVEWPASLRSVTRGGAILL*
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mRNA from alignment at L-elsbetiae_contig6798:788..2957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6798.15553.1 ID=mRNA_L-elsbetiae_contig6798.15553.1|Name=mRNA_L-elsbetiae_contig6798.15553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2170bp|location=Sequence derived from alignment at L-elsbetiae_contig6798:788..2957+ (Laminarionema elsbetiae ELsaHSoW15)
GACGTGGAACATTTCGGTGGATGTTTTAATGCAGAGTACCGCCATCGAAC
AGTGGGCAGGATCCCTCGAGGACATATCGTTCGGCGACGCATTCAACGAG
TGTATCAGGGGAGTTGTGTGGCCGACCTTAGTACGAAAGCTATCATTCGG
GAAGAAGTTCAACCGGCCAGTGGACGATGTGGTGTGGCCGGCCTCTCTCC
GAGTGTTGTCGTTCGGGGATGCCTTCGCTCAGCCTATCGCTGGAGATGTG
TGGCCCGCCTCCCTGCAGGAGCTGTCGCTTGGCAATGCCTTCAATCGACC
CATCGCCGGAGTTTTGTGGCCTGACTCCTTGCAAAAGCTATCACTGGGCG
GTAGGTTCAACCAGCCTATCGCTGCAGTTGTGTGGCCCGCCTCCCTACAA
CAGCTATCATTTGGCACATTTAACCGAGGCTTCAACCAGCCGATCTCCGG
GATCACATGGCCGGCTACCCTGCGAAAGCTATCATTCGGTTTTAGCTTCA
ACCAGCCCATCGCAAAGATTACGTGGCCGGCCACCTTGCAACAGCTATCA
TTCGGCCATAGCTTCAACCAACCCCTCGCCAGAGTCGTGTGGCCGGCCTC
CCTACAGCAGCTATCATTCGGCTCGAATTATTGCAGTGCCTTTAACCAGC
CCATCACGGGGATCACGTGGCCGGCTTCCATACAACAGCTGGAATTTGGC
GGTGGCTTCGACCAGCTCATCACCGAGGTCGTATGGCCGGCGTCCTTGCA
AAAGCTCTCCGTGGGCAACCCGCCCATCGACGATGTCGTGTGGCCGACCT
CCCTGCAGGAGCTATGCTTCGGTCGTAACTTCAACGAGTCCATCGCCGGA
GTTGTGTGGCCAGCCTCATTGCAACAGCTAACGTTGGGCAACCCGCCCAT
CAACGATGTCGTGTGGCCAGTCTCTCTTGAATGGCTATGTTTCGAGTCCT
TTAACCGGCCTATCATCGGAGTTGCATGGCCTGCCTCTCTGCTACATCTG
GCTATGGGGGAATGCTTCAACCAACCTATCATCGGAGTGGTGTGGCCGCC
CTCCCTGCAGAGGCTATGGATCGGGGGTGACTTCAACCAGCCTATCACCG
GGGTAGTGTGGCCAGCTTCTCTCCTACAGCTGTACTTTGGGAATGATTTC
AACCAGCCTATCGCCGGAGTGGTGTGGCCGGCATCCCTCCAGGAGCTAGG
GTTCAGCGCGTACCCGACGAGCTTCGATCAGCCCATCGTCGGGGTTTCGT
GGCCGGCATCTCTCGTCAAGCTAGAGTTCGGGGATGCCTTCAACCAGCCT
ATTGCCGCAGTCGGGGTGCCGTGGCCAGCTTCTCTCGTCACGCTAGATCT
CGGGGGTGCCTTCAATCAGCCTATTGCCGGAGTGGTGTGGCCGGCATCCC
TGCAGGAGCTAGAATTCGGGGGGTACCGGACGAGCTTCAATCAGCCCATC
GTCGGGATTTCGTGGCCGGCATCTCTCGTCAAAGTATCGTTCGGGGATGC
CTTCAATCAGCCTATTGCCGGAGTGGTGTGGCCGGCATCCCTGCAGGAGC
TCGAGTTTGGGTATGACAAATCAAACTTCGACCAGCCCATCGTCGGGGTT
GAGTGGCCCGCATCCCTTCGAAGTGTTACTCGTGGGGGGGCTATTCTACT
CTGAAAGCGTTCGGGCCAGGCGATAGGTTGCGTGGCTATTTGACGGTATC
TACGAGGAGGGACAGGTTTGAAGATAGGCATTTTGTTTGCTTTCATACCG
TTCCAGCTACGGAGCTCGGTGTTTGCAAACACACTATTTTGAGCTCAATC
GTTATGATTCCTGGTCAGCACCTTAAAGTGAGAGTCAATCGATCAGGATC
GAAAATATGTACGTGTGTATTGAAGACGTGCTTCCCCTCGTGGATTTACA
CTGATAAACGAATCTCGCCTTGGATTAGCGTGCGTTTTCCATCTTTAGTA
GGCATTTGAAGCTTACAACCAGATACGTGCGTCTGTCTCGGCCATTTGTT
TGGGGATTGTTTCCCGTGTCAAAACTCAAGGGTTTCAACACTCATAAGTT
CGATGTCGGTTGCCTTTGGGGGGAAGTGGTATGATGAAGAGCCTTCATAT
TTCGGCCCAACAACTTGCGAAGTGGAGGGGCACGATCATTCGTTTGTGAT
GATGGCGCGGTAAAAGAGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6798:788..2957+

>mRNA_L-elsbetiae_contig6798.15553.1 ID=mRNA_L-elsbetiae_contig6798.15553.1|Name=mRNA_L-elsbetiae_contig6798.15553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3252bp|location=Sequence derived from alignment at L-elsbetiae_contig6798:788..2957+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGAGTACCGCCATCGAACAGTGGGCAGGATCCCTCGAGGACATATC
GTTCGGCGACGCATTCAACGAGTGTATCAGGGGAGTTGTGTGGCCGACCT
TAGTACGAAAGCTATCATTCGGGAAGAAGTTCAACCGGCCAGTGGACGAT
GTGGTGTGGCCGGCCTCTCTCCGAGTGTTGTCGTTCGGGGATGCCTTCGC
TCAGCCTATCGCTGGAGATGTGTGGCCCGCCTCCCTGCAGGAGCTGTCGC
TTGGCAATGCCTTCAATCGACCCATCGCCGGAGTTTTGTGGCCTGACTCC
TTGCAAAAGCTATCACTGGGCGGTAGGTTCAACCAGCCTATCGCTGCAGT
TGTGTGGCCCGCCTCCCTACAACAGCTATCATTTGGCACATTTAACCGAG
GCTTCAACCAGCCGATCTCCGGGATCACATGGCCGGCTACCCTGCGAAAG
CTATCATTCGGTTTTAGCTTCAACCAGCCCATCGCAAAGATTACGTGGCC
GGCCACCTTGCAACAGCTATCATTCGGCCATAGCTTCAACCAACCCCTCG
CCAGAGTCGTGTGGCCGGCCTCCCTACAGCAGCTATCATTCGGCTCGAAT
TATTGCAGTGCCTTTAACCAGCCCATCACGGGGATCACGTGGCCGGCTTC
CATACAACAGCTGGAATTTGGCGGTGGCTTCGACCAGCTCATCACCGAGG
TCGTATGGCCGGCGTCCTTGCAAAAGCTCTCCGTGGGCAACCCGCCCATC
GACGATGTCGTGTGGCCGACCTCCCTGCAGGAGCTATGCTTCGGTCGTAA
CTTCAACGAGTCCATCGCCGGAGTTGTGTGGCCAGCCTCATTGCAACAGC
TAACGTTGGGCAACCCGCCCATCAACGATGTCGTGTGGCCAGTCTCTCTT
GAATGGCTATGTTTCGAGTCCTTTAACCGGCCTATCATCGGAGTTGCATG
GCCTGCCTCTCTGCTACATCTGGCTATGGGGGAATGCTTCAACCAACCTA
TCATCGGAGTGGTGTGGCCGCCCTCCCTGCAGAGGCTATGGATCGGGGGT
GACTTCAACCAGCCTATCACCGGGGTAGTGTGGCCAGCTTCTCTCCTACA
GCTGTACTTTGGGAATGATTTCAACCAGCCTATCGCCGGAGTGGTGTGGC
CGGCATCCCTCCAGGAGCTAGGGTTCAGCGCGTACCCGACGAGCTTCGAT
CAGCCCATCGTCGGGGTTTCGTGGCCGGCATCTCTCGTCAAGCTAGAGTT
CGGGGATGCCTTCAACCAGCCTATTGCCGCAGTCGGGGTGCCGTGGCCAG
CTTCTCTCGTCACGCTAGATCTCGGGGGTGCCTTCAATCAGCCTATTGCC
GGAGTGGTGTGGCCGGCATCCCTGCAGGAGCTAGAATTCGGGGGGTACCG
GACGAGCTTCAATCAGCCCATCGTCGGGATTTCGTGGCCGGCATCTCTCG
TCAAAGTATCGTTCGGGGATGCCTTCAATCAGCCTATTGCCGGAGTGGTG
TGGCCGGCATCCCTGCAGGAGCTCGAGTTTGGGTATGACAAATCAAACTT
CGACCAGCCCATCGTCGGGGTTGAGTGGCCCGCATCCCTTCGAAGTGTTA
CTCGTGGGGGGGCTATTCTACTCTGAATGCAGAGTACCGCCATCGAACAG
TGGGCAGGATCCCTCGAGGACATATCGTTCGGCGACGCATTCAACGAGTG
TATCAGGGGAGTTGTGTGGCCGACCTTAGTACGAAAGCTATCATTCGGGA
AGAAGTTCAACCGGCCAGTGGACGATGTGGTGTGGCCGGCCTCTCTCCGA
GTGTTGTCGTTCGGGGATGCCTTCGCTCAGCCTATCGCTGGAGATGTGTG
GCCCGCCTCCCTGCAGGAGCTGTCGCTTGGCAATGCCTTCAATCGACCCA
TCGCCGGAGTTTTGTGGCCTGACTCCTTGCAAAAGCTATCACTGGGCGGT
AGGTTCAACCAGCCTATCGCTGCAGTTGTGTGGCCCGCCTCCCTACAACA
GCTATCATTTGGCACATTTAACCGAGGCTTCAACCAGCCGATCTCCGGGA
TCACATGGCCGGCTACCCTGCGAAAGCTATCATTCGGTTTTAGCTTCAAC
CAGCCCATCGCAAAGATTACGTGGCCGGCCACCTTGCAACAGCTATCATT
CGGCCATAGCTTCAACCAACCCCTCGCCAGAGTCGTGTGGCCGGCCTCCC
TACAGCAGCTATCATTCGGCTCGAATTATTGCAGTGCCTTTAACCAGCCC
ATCACGGGGATCACGTGGCCGGCTTCCATACAACAGCTGGAATTTGGCGG
TGGCTTCGACCAGCTCATCACCGAGGTCGTATGGCCGGCGTCCTTGCAAA
AGCTCTCCGTGGGCAACCCGCCCATCGACGATGTCGTGTGGCCGACCTCC
CTGCAGGAGCTATGCTTCGGTCGTAACTTCAACGAGTCCATCGCCGGAGT
TGTGTGGCCAGCCTCATTGCAACAGCTAACGTTGGGCAACCCGCCCATCA
ACGATGTCGTGTGGCCAGTCTCTCTTGAATGGCTATGTTTCGAGTCCTTT
AACCGGCCTATCATCGGAGTTGCATGGCCTGCCTCTCTGCTACATCTGGC
TATGGGGGAATGCTTCAACCAACCTATCATCGGAGTGGTGTGGCCGCCCT
CCCTGCAGAGGCTATGGATCGGGGGTGACTTCAACCAGCCTATCACCGGG
GTAGTGTGGCCAGCTTCTCTCCTACAGCTGTACTTTGGGAATGATTTCAA
CCAGCCTATCGCCGGAGTGGTGTGGCCGGCATCCCTCCAGGAGCTAGGGT
TCAGCGCGTACCCGACGAGCTTCGATCAGCCCATCGTCGGGGTTTCGTGG
CCGGCATCTCTCGTCAAGCTAGAGTTCGGGGATGCCTTCAACCAGCCTAT
TGCCGCAGTCGGGGTGCCGTGGCCAGCTTCTCTCGTCACGCTAGATCTCG
GGGGTGCCTTCAATCAGCCTATTGCCGGAGTGGTGTGGCCGGCATCCCTG
CAGGAGCTAGAATTCGGGGGGTACCGGACGAGCTTCAATCAGCCCATCGT
CGGGATTTCGTGGCCGGCATCTCTCGTCAAAGTATCGTTCGGGGATGCCT
TCAATCAGCCTATTGCCGGAGTGGTGTGGCCGGCATCCCTGCAGGAGCTC
GAGTTTGGGTATGACAAATCAAACTTCGACCAGCCCATCGTCGGGGTTGA
GTGGCCCGCATCCCTTCGAAGTGTTACTCGTGGGGGGGCTATTCTACTCT
GA
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