mRNA_L-elsbetiae_contig6793.15550.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6793.15550.1
Unique NamemRNA_L-elsbetiae_contig6793.15550.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Match: D7FYD3_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD3_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.070e-32
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:   16 EIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPA 192
            +IQGPEDTPYERGTFLL+L+IPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPA
Sbjct:   39 QIQGPEDTPYERGTFLLELKIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPA 97
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BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Match: A0A835Z9Y5_9STRA (UBC37-like protein, E2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y5_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.060e-31
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:   16 EIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPA 192
            +++GP+DTPY RG FLLD+ +PD YPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPA
Sbjct:   39 QVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPA 97
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BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Match: D0MZ96_PHYIT (Ubiquitin-conjugating enzyme E2, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MZ96_PHYIT)

HSP 1 Score: 104 bits (260), Expect = 7.860e-28
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:   16 EIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAVR 198
            EI GP+ +PYE+G F L+++IP+RYPFEPPKVRFVTPIYHPNID  GRICLDTLKM+P  R
Sbjct:   15 EILGPDGSPYEKGVFQLEIEIPERYPFEPPKVRFVTPIYHPNIDDAGRICLDTLKMQPKAR 75
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BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Match: A0A425D6I0_9STRA (UBC core domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D6I0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.430e-28
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   16 EIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRP 189
            EIQGPE TPYE+G FLL + IP+RYPFEPPKV+FVTPI+HPNID+ GRICLDTLKM+P
Sbjct:    4 EIQGPEGTPYEKGIFLLSITIPERYPFEPPKVQFVTPIFHPNIDNAGRICLDTLKMQP 61
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BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Match: A0A1V9Z8S0_9STRA (Ubiquitin-conjugating enzyme E2T-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8S0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.280e-27
Identity = 45/58 (77.59%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   16 EIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRP 189
            +IQGPE TPYE G FLL+++IP+RYPFEPPKV F+TPI+HPNID+GGRICLDTLKM+P
Sbjct:   38 QIQGPEGTPYENGVFLLEIKIPERYPFEPPKVHFITPIFHPNIDNGGRICLDTLKMQP 95
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BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Match: A0A1V9YZW2_9STRA (Ubiquitin-conjugating enzyme E2 T-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YZW2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.230e-27
Identity = 45/58 (77.59%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   16 EIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRP 189
            +IQGPE TPYE G FLL+++IP+RYPFEPPKV F+TPI+HPNID+GGRICLDTLKM+P
Sbjct:   38 QIQGPEGTPYENGVFLLEIKIPERYPFEPPKVHFLTPIFHPNIDNGGRICLDTLKMQP 95
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BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Match: H3G6G5_PHYRM (UBC core domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3G6G5_PHYRM)

HSP 1 Score: 103 bits (257), Expect = 5.430e-27
Identity = 43/58 (74.14%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   16 EIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRP 189
            +I GP+ +PYE+G F L+++IP+RYPFEPPKVRF+TPIYHPNID GGRICLDTLKM+P
Sbjct:   17 QILGPDGSPYEKGVFQLEIEIPERYPFEPPKVRFITPIYHPNIDDGGRICLDTLKMQP 74
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BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Match: A0A067BXZ1_SAPPC (UBC core domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BXZ1_SAPPC)

HSP 1 Score: 105 bits (262), Expect = 7.880e-27
Identity = 44/58 (75.86%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   16 EIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRP 189
            +IQGPE TPYE G FLL++++P+RYPFEPPKV F TPI+HPNID+GGRICLDTLKM+P
Sbjct:   38 QIQGPEGTPYENGVFLLEIKVPERYPFEPPKVHFTTPIFHPNIDNGGRICLDTLKMQP 95
[Close]
BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Match: A0A3M6VC19_9STRA (UBC core domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VC19_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.380e-27
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:   16 EIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAV 195
            +I GP+ +PYE+G F L+++IP+RYPFEPPKVRFVTPIYHPNID  GRICLDTLKM+P V
Sbjct:   38 QILGPDGSPYEKGVFQLEIEIPERYPFEPPKVRFVTPIYHPNIDDAGRICLDTLKMQPKV 97
[Close]
BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Match: A0A7S2S0X2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0X2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 9.170e-27
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   16 EIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRP 189
            +IQGP  TPYERG+F L+L IP+RYPFEPPKVRF+TPIYHPNID GGRICLDTLKM+P
Sbjct:   38 QIQGPPATPYERGSFSLELSIPERYPFEPPKVRFLTPIYHPNIDDGGRICLDTLKMQP 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6793.15550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYD3_ECTSI1.070e-3294.92UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z9Y5_9STRA6.060e-3183.05UBC37-like protein, E2 n=1 Tax=Tribonema minus Tax... [more]
D0MZ96_PHYIT7.860e-2873.77Ubiquitin-conjugating enzyme E2, putative n=1 Tax=... [more]
A0A425D6I0_9STRA8.430e-2879.31UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A1V9Z8S0_9STRA2.280e-2777.59Ubiquitin-conjugating enzyme E2T-like n=1 Tax=Achl... [more]
A0A1V9YZW2_9STRA5.230e-2777.59Ubiquitin-conjugating enzyme E2 T-like n=1 Tax=Thr... [more]
H3G6G5_PHYRM5.430e-2774.14UBC core domain-containing protein n=2 Tax=Phytoph... [more]
A0A067BXZ1_SAPPC7.880e-2775.86UBC core domain-containing protein n=2 Tax=Saprole... [more]
A0A3M6VC19_9STRA8.380e-2773.33UBC core domain-containing protein n=2 Tax=Peronos... [more]
A0A7S2S0X2_9STRA9.170e-2781.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6793contigL-elsbetiae_contig6793:3059..4153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue5.2e-27
Seed eggNOG ortholog2880.D7FYD3
KEGG koko:K13960
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031625,GO:0032446,GO:0033554,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Exons2
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.3953204-CDS-L-elsbetiae_contig6793:3058..31441622816752.3953204-CDS-L-elsbetiae_contig6793:3058..3144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6793 3059..3144 +
1691683786.831904-CDS-L-elsbetiae_contig6793:3058..31441691683786.831904-CDS-L-elsbetiae_contig6793:3058..3144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6793 3059..3144 +
1622816752.407647-CDS-L-elsbetiae_contig6793:4041..41531622816752.407647-CDS-L-elsbetiae_contig6793:4041..4153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6793 4042..4153 +
1691683786.8432128-CDS-L-elsbetiae_contig6793:4041..41531691683786.8432128-CDS-L-elsbetiae_contig6793:4041..4153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6793 4042..4153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6793.15550.1prot_L-elsbetiae_contig6793.15550.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6793 3059..4153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6793.15550.1

>prot_L-elsbetiae_contig6793.15550.1 ID=prot_L-elsbetiae_contig6793.15550.1|Name=mRNA_L-elsbetiae_contig6793.15550.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
MAIVPEIQGPEDTPYERGTFLLDLQIPDRYPFEPPKVRFVTPIYHPNIDS
GGRICLDTLKMRPAVR
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mRNA from alignment at L-elsbetiae_contig6793:3059..4153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6793.15550.1 ID=mRNA_L-elsbetiae_contig6793.15550.1|Name=mRNA_L-elsbetiae_contig6793.15550.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1095bp|location=Sequence derived from alignment at L-elsbetiae_contig6793:3059..4153+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGATTGTTCCAGAAATCCAGGGGCCGGAGGACACGCCGTACGAGCG
CGGCACTTTCTTGCTGGACCTTCAGATACCCGACAGGTATGCATAAACGA
CGATGTCACTTACCGTAGTATCACACCGAACCTTGAACAGCAGCTGGGCA
TTTGGCGCCGCCGGGAGCCCGGTTGTGGGCGTTCCATTGAAATGGTGTTG
TATCGCAAAACAACCACATGCACATGCACGGGGTAAGGAGTCTAACTGTG
TATGGTAGGATTTTGTTCAATGTGGGTGTTTTCGGTTTGATTTCCCTCTT
ACAACAATATGTATGTATGTATGTTGTGTTCACATTAAAAACCGTTCTGA
TCTCTCCATCCAGTACCTCTCAATGTCCGTACTAATCCAACACTTGATGC
GGTCAATTCCCGTGGTCACAGGCCAACTTATACCCAAGAAAAGGTACATG
AAAAATAAAGTGGGCCCGAAGGGCCAGCAAAGCAATAATAAAACAGATAT
CGAATGTGGAGCCCTTCGCTCCCCTCTACACGCCGTGTGAGGTAAAAACA
AAACTGAAACAGCCAACACCACTATCTTGGTAACCCAACAAAGCCGGGGG
GTTCCGCGCCGGGTTCTCGCCGGCCAGGCCCGCACAGGTCTACACTGTCC
TCCCCCCGATTATACCGCCCACCAACAGGGGATATAAAAAAATAAAATAA
AATAAAATACCCTCGGACAGGACACGACGCAGGTCGAGAATACAAACAAA
CAACACACAAACACACACAACATAACCCCTGACAAAATACAGTAGTGGGC
GGTATACCATGAAGAAAACACTCGGCGACGATGTTTGGCTTCAGGGGGCG
GCCTTTCTCTTTCGCCTGTTGATGTTCTCAGCGCCGGACACTTTACCGTC
GCCAGCGCCAGCCTGCTTAAACCGATCGACCACGCGTTAATCCTTATGTT
TTTCTCGAACGCGAACAACAAACGAATCACCAGGTACCCGTTCGAGCCAC
CCAAGGTGCGCTTCGTGACGCCCATCTACCATCCCAACATCGACAGCGGA
GGGCGAATTTGCCTCGACACGCTCAAGATGAGGCCGGCGGTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6793:3059..4153+

>mRNA_L-elsbetiae_contig6793.15550.1 ID=mRNA_L-elsbetiae_contig6793.15550.1|Name=mRNA_L-elsbetiae_contig6793.15550.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig6793:3059..4153+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGATTGTTCCAGAAATCCAGGGGCCGGAGGACACGCCGTACGAGCG
CGGCACTTTCTTGCTGGACCTTCAGATACCCGACAGATGGCGATTGTTCC
AGAAATCCAGGGGCCGGAGGACACGCCGTACGAGCGCGGCACTTTCTTGC
TGGACCTTCAGATACCCGACAGGTACCCGTTCGAGCCACCCAAGGTGCGC
TTCGTGACGCCCATCTACCATCCCAACATCGACAGCGGAGGGCGAATTTG
CCTCGACACGCTCAAGATGAGGCCGGCGGTGAGGGTACCCGTTCGAGCCA
CCCAAGGTGCGCTTCGTGACGCCCATCTACCATCCCAACATCGACAGCGG
AGGGCGAATTTGCCTCGACACGCTCAAGATGAGGCCGGCGGTGAGG
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