mRNA_L-elsbetiae_contig6792.15549.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6792.15549.1
Unique NamemRNA_L-elsbetiae_contig6792.15549.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6792.15549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6792contigL-elsbetiae_contig6792:4790..6736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size627
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.3515134-CDS-L-elsbetiae_contig6792:4789..53811622816752.3515134-CDS-L-elsbetiae_contig6792:4789..5381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6792 4790..5381 +
1691683786.81184-CDS-L-elsbetiae_contig6792:4789..53811691683786.81184-CDS-L-elsbetiae_contig6792:4789..5381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6792 4790..5381 +
1622816752.364584-CDS-L-elsbetiae_contig6792:6702..67341622816752.364584-CDS-L-elsbetiae_contig6792:6702..6734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6792 6703..6734 +
1691683786.821762-CDS-L-elsbetiae_contig6792:6702..67341691683786.821762-CDS-L-elsbetiae_contig6792:6702..6734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6792 6703..6734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6792.15549.1prot_L-elsbetiae_contig6792.15549.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6792 4790..6734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6792.15549.1

>prot_L-elsbetiae_contig6792.15549.1 ID=prot_L-elsbetiae_contig6792.15549.1|Name=mRNA_L-elsbetiae_contig6792.15549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
PSGDHRHRPHSSDVFCRPRGPHAGRDLHDRRGRGVETQPFPGRARRGTSC
ERLYRRRSPPGVRRSDAAVSRGPWTGGGFCDGERRRQNPGGDLRRGAAEG
HRVPLRVRRPRGLAGGGGPRGFSLYLLASCPFSGGGDNPPCAIVFPSSRR
RRRERAGGEAGESRHRDGRGGSVAKRERAGDPAEWSCPPHVAIREPAVHR
RVGHHHGP
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mRNA from alignment at L-elsbetiae_contig6792:4790..6736+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6792.15549.1 ID=mRNA_L-elsbetiae_contig6792.15549.1|Name=mRNA_L-elsbetiae_contig6792.15549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1947bp|location=Sequence derived from alignment at L-elsbetiae_contig6792:4790..6736+ (Laminarionema elsbetiae ELsaHSoW15)
CCATCGGGCGACCATCGCCATCGACCTCACTCAAGCGACGTCTTTTGCAG
ACCTCGCGGCCCTCATGCTGGCCGCGACCTCCACGATCGCCGGGGTCGCG
GTGTGGAAACCCAACCGTTTCCTGGTCGGGCGCGGCGCGGAACCTCTTGC
GAGCGACTGTACCGCCGACGCTCTCCTCCGGGTGTGCGCCGAAGCGATGC
AGCAGTTTCCCGAGGCCCCTGGACTGGTGGAGGTTTTTGTGACGGCGAGC
GCCGCAGGCAAAACCCCGGCGGAGACCTTCGGCGCGGTGCTGCAGAAGGC
CACCGTGTTCCTCTTCGCGTGCGACGACCACGGGGGCTTGCGGGAGGTGG
AGGGCCTCGTGGCTTTTCCCTCTACCTTCTCGCCTCCTGTCCTTTCTCCG
GCGGCGGCGACAACCCCCCCTGCGCCATCGTCTTCCCCAGCAGCAGGCGG
CGGAGACGGGAGCGAGCAGGCGGCGAAGCGGGCGAAAGTAGACACCGGGA
TGGGAGAGGGGGTAGCGTTGCCAAGCGCGAGCGAGCCGGCGACCCCGCCG
AATGGAGCTGTCCTCCTCACGTCGCTATCCGCGAGCCAGCAGGTGAGGTT
GCGTTTTCCTTTCTAAAAAATTGTATATATATGCTGCACAGGAGATCGCC
GCGCTGTTCACACCTACCCCAGCCGCCAGGGGACATGGTAATGCGGGTAG
CGCCAGACGAGTTGGCACAGACCCCACGCGCGCGTCGCGCGTCGCAGCGG
CGGTCTGCCTTTTCCTTCCTTGTACAATGCACACACAGCAGGTTACATAC
ATGCGTAGACACGCACACACCAATGATTTTCTACATGCGTAGACACGCAC
ACACCAATGATTCTCAACCCATTTCGCGTACGGGAGATACCACCTCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCAACAACAAACACACCCCCCCCGGCC
TGCCCCGCCGCGGCCACGCCACAGCCGGCATTTTCGGGTTTTGGGGGCGC
ACCTTCGAGACATATGTCTGTACTTTGCCGGTCTCTGTGTAGTTATATAC
AAATGTATCTATCACACAGGTACTGTAAGCCGGGCTGTGGGGTACGAATA
GGTACGCACGCTGCCGTCCACGCGCAGCACGGGGGATGTGTTATTTCATC
TATATTTTCTTGCCGGGCGTCCATACGATGCCCCGCCCCAGCGAAACAAC
GGTTGTCGCATTTATTTACGCTCTCCGCCTGGCCGCGGCGCACTCTGTTT
TTCGCCAAACAGTTTTTCCACAATAACAGTTTGCGGCATTTTATGCCCTC
ACGGGACCCCCCCCCCCCCCACCCAACCACATTTTATTTTTACTTTATTT
TATTTTACTTTATTTTATTTTATTCCCACGCGGGACCCCCCCCCCCCCCC
CCCTTCCCTTCCACGCACGTGAGCACGCACGCACGCACGACGCACACACG
TACGCCCGTGTACACCGCGTTCTTCCGCACGCACGCACGCACTCACACAC
CGCGTCTTACACGCACAAGCGCGCAAGCACAAGCGCGCACGCACAAGCGC
GACACGCCTCACGCACAACCGCACGCACGCACGCATGCACACAACGCGTC
TTACTAGCGCCGTTTTTACATACACCGCACGCACGCGAGCGCGCACGCAC
AACCGCTTTCACGCCTGCACGCACGAACGCACGCACACGACGCGTCTTAC
CAGCGCCGTTTTTACACGCACACACACAACACGCCCTATGCACAATCGGC
ACTCACGCACGAACGCACACCCGCACGCACGCAAGCCACACGCACAACCG
TTTTCACGCACGCACGCACGCACGCACGCACAGCATGCGTCTTAGTAGCG
CCGTTTTTTTCACGCGGGGCCGCCCCCCACCCCCCATTTCGCACGCACGC
ACGCGCTCTGCAGTTCACCGCAGAGTGGGCCATCATCATGGGCCACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6792:4790..6736+

>mRNA_L-elsbetiae_contig6792.15549.1 ID=mRNA_L-elsbetiae_contig6792.15549.1|Name=mRNA_L-elsbetiae_contig6792.15549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1248bp|location=Sequence derived from alignment at L-elsbetiae_contig6792:4790..6736+ (Laminarionema elsbetiae ELsaHSoW15)
CCATCGGGCGACCATCGCCATCGACCTCACTCAAGCGACGTCTTTTGCAG
ACCTCGCGGCCCTCATGCTGGCCGCGACCTCCACGATCGCCGGGGTCGCG
GTGTGGAAACCCAACCGTTTCCTGGTCGGGCGCGGCGCGGAACCTCTTGC
GAGCGACTGTACCGCCGACGCTCTCCTCCGGGTGTGCGCCGAAGCGATGC
AGCAGTTTCCCGAGGCCCCTGGACTGGTGGAGGTTTTTGTGACGGCGAGC
GCCGCAGGCAAAACCCCGGCGGAGACCTTCGGCGCGGTGCTGCAGAAGGC
CACCGTGTTCCTCTTCGCGTGCGACGACCACGGGGGCTTGCGGGAGGTGG
AGGGCCTCGTGGCTTTTCCCTCTACCTTCTCGCCTCCTGTCCTTTCTCCG
GCGGCGGCGACAACCCCCCCTGCGCCATCGTCTTCCCCAGCAGCAGGCGG
CGGAGACGGGAGCGAGCAGGCGGCGAAGCGGGCGAAAGTAGACACCGGGA
TGGGAGAGGGGGTAGCGTTGCCAAGCGCGAGCGAGCCGGCGACCCCGCCG
AATGGAGCTGTCCTCCTCACGTCGCTATCCGCGAGCCAGCAGCCATCGGG
CGACCATCGCCATCGACCTCACTCAAGCGACGTCTTTTGCAGACCTCGCG
GCCCTCATGCTGGCCGCGACCTCCACGATCGCCGGGGTCGCGGTGTGGAA
ACCCAACCGTTTCCTGGTCGGGCGCGGCGCGGAACCTCTTGCGAGCGACT
GTACCGCCGACGCTCTCCTCCGGGTGTGCGCCGAAGCGATGCAGCAGTTT
CCCGAGGCCCCTGGACTGGTGGAGGTTTTTGTGACGGCGAGCGCCGCAGG
CAAAACCCCGGCGGAGACCTTCGGCGCGGTGCTGCAGAAGGCCACCGTGT
TCCTCTTCGCGTGCGACGACCACGGGGGCTTGCGGGAGGTGGAGGGCCTC
GTGGCTTTTCCCTCTACCTTCTCGCCTCCTGTCCTTTCTCCGGCGGCGGC
GACAACCCCCCCTGCGCCATCGTCTTCCCCAGCAGCAGGCGGCGGAGACG
GGAGCGAGCAGGCGGCGAAGCGGGCGAAAGTAGACACCGGGATGGGAGAG
GGGGTAGCGTTGCCAAGCGCGAGCGAGCCGGCGACCCCGCCGAATGGAGC
TGTCCTCCTCACGTCGCTATCCGCGAGCCAGCAGTTCACCGCAGAGTGGG
CCATCATCATGGGCCATTCACCGCAGAGTGGGCCATCATCATGGGCCA
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