mRNA_L-elsbetiae_contig6789.15544.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6789.15544.1
Unique NamemRNA_L-elsbetiae_contig6789.15544.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6789.15544.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.410e-40
Identity = 92/132 (69.70%), Postives = 103/132 (78.03%), Query Frame = 3 
Query:  177 AEQAKDHEEGGTTLVSTKMQESLCRLETENASLRALVDSMQMDLQMANARLYDELQTPSRDRSPSPARAPKHRGGVGGVDASGSLGKSS---SFMSPENMAPLRKRVGSANSSIGGELEAIVETEDEEVSIV 563
            AEQ KDH+  G++  ST+MQESL R+E ENASLRALVDSMQMDLQMANARLYDE+QTPSRDRSPSP R P  RG   GVD S   GK     SF+SP++MAPLRKRVGS  SS+GG +EAI E EDEEV IV
Sbjct:  915 AEQEKDHQRRGSSQASTEMQESLSRMEAENASLRALVDSMQMDLQMANARLYDEMQTPSRDRSPSPGRTPSRRGS--GVDGSAHPGKPPLPLSFISPDSMAPLRKRVGSGTSSLGG-MEAIAEIEDEEVGIV 1043
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BLAST of mRNA_L-elsbetiae_contig6789.15544.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 5.440e-37
Identity = 88/132 (66.67%), Postives = 100/132 (75.76%), Query Frame = 3 
Query:  177 AEQAKDHEEGGTTLVSTKMQESLCRLETENASLRALVDSMQMDLQMANARLYDELQTPSRDRSPSPARAPKHRGGVGGVDASGSLGKSS---SFMSPENMAPLRKRVGSANSSIGGELEAIVETEDEEVSIV 563
            AEQ KDH+  G+   ST+MQE+L R+E ENASLRALVDSMQMDLQMANARLYDE+QT SRDRSPSP R P  RG   GVDAS   GK     SF+SP+++AP RKR GS  SS+GG +EAI E EDEEV IV
Sbjct: 1050 AEQEKDHQRRGSLQASTEMQENLNRVEAENASLRALVDSMQMDLQMANARLYDEMQTKSRDRSPSPGRTPSRRGS--GVDASAHPGKPPLPLSFISPDSVAPPRKRAGSGTSSLGG-MEAIAEIEDEEVGIV 1178
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6789.15544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR41_ECTSI1.410e-4069.70Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A6H5L0T6_9PHAE5.440e-3766.67Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6789contigL-elsbetiae_contig6789:2624..5433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1088
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6789.15544.1prot_L-elsbetiae_contig6789.15544.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6789 2854..4911 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.7180188-UTR-L-elsbetiae_contig6789:2623..28531622816751.7180188-UTR-L-elsbetiae_contig6789:2623..2853Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6789 2624..2853 +
1691683786.3104894-UTR-L-elsbetiae_contig6789:2623..28531691683786.3104894-UTR-L-elsbetiae_contig6789:2623..2853Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6789 2624..2853 +
1622816751.761499-UTR-L-elsbetiae_contig6789:4911..54331622816751.761499-UTR-L-elsbetiae_contig6789:4911..5433Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6789 4912..5433 +
1691683786.357319-UTR-L-elsbetiae_contig6789:4911..54331691683786.357319-UTR-L-elsbetiae_contig6789:4911..5433Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6789 4912..5433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.730188-CDS-L-elsbetiae_contig6789:2853..28941622816751.730188-CDS-L-elsbetiae_contig6789:2853..2894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6789 2854..2894 +
1691683786.322951-CDS-L-elsbetiae_contig6789:2853..28941691683786.322951-CDS-L-elsbetiae_contig6789:2853..2894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6789 2854..2894 +
1622816751.7412019-CDS-L-elsbetiae_contig6789:3955..40641622816751.7412019-CDS-L-elsbetiae_contig6789:3955..4064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6789 3956..4064 +
1691683786.3344615-CDS-L-elsbetiae_contig6789:3955..40641691683786.3344615-CDS-L-elsbetiae_contig6789:3955..4064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6789 3956..4064 +
1622816751.7512066-CDS-L-elsbetiae_contig6789:4725..49111622816751.7512066-CDS-L-elsbetiae_contig6789:4725..4911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6789 4726..4911 +
1691683786.3478389-CDS-L-elsbetiae_contig6789:4725..49111691683786.3478389-CDS-L-elsbetiae_contig6789:4725..4911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6789 4726..4911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6789.15544.1

>prot_L-elsbetiae_contig6789.15544.1 ID=prot_L-elsbetiae_contig6789.15544.1|Name=mRNA_L-elsbetiae_contig6789.15544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MQESLCRLETENASLRALVDSMQMDLQMANARLYDELQTPSRDRSPSPAR
APKHRGGVGGVDASGSLGKSSSFMSPENMAPLRKRVGSANSSIGGELEAI
VETEDEEVSIV*
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mRNA from alignment at L-elsbetiae_contig6789:2624..5433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6789.15544.1 ID=mRNA_L-elsbetiae_contig6789.15544.1|Name=mRNA_L-elsbetiae_contig6789.15544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2810bp|location=Sequence derived from alignment at L-elsbetiae_contig6789:2624..5433+ (Laminarionema elsbetiae ELsaHSoW15)
AAACGTTGTAGTAATCTAGAAAACAGGGGGAAACATGTAAACGCACTGTG
TTCTTCGCCTCCTTCCCTGACAGGTCGCGGAAGCAGCGCCGCTGTCAGAA
TCGTGGGGGCGCAGAAATCCTCACTGCGGCGAGGGGGCTATCGAGTCTTT
CCCCGTCGCTGCACCGACTGAACAGAGCCGAGCAGGCCAAGGATCACGAA
GAGGGCGGAACCACGCTGGTATCGACGAAGATGCAAGAGAGCCTGTGCCG
CCTTGAAACGGAAAACGCCAGGTGATCAGTAAAACTAAAAGCTCTATTGT
ACCAACAGATGCGAACTACGTGTGTATGTCTCGTGTATGTACATATGGTC
CGTGCACAACAATTTGGCCAATAATTTTCCACGCGTGGATGACAACTTTT
CTCTGCACACAGGTGGTTGTTCCGAAATCTGAAAATACCGGCAAACGCCC
CGTCTCCAGGCGCATGACTTCAGGAAGAGTTTTTTTTTTTTTTTCCCACA
CTTTTTATCAGAGACAAACTATAGAACTTGTGTTCTTTTACTTGGGAAAA
CTAACCCTCCGATTTCAAAAAAGACTGCGGCATTCGATCCCCAGGGACGT
TTGTTTTTTTTCGAGGAAGAATCTAGTTCTCGATTTATCGGGAAAAAAGA
GCGTAGAAGGCCAAGTTGTATTATTTTTTGGGGGAAAACTGAATGTACGA
TTTCAAAATGGAGCACGGCAAACGGTTCTTCGCATCTATAGTCTATATAG
GGACATATTTTTGGGTTTGCCAAGTAAAAATCTAGCTTTTCGTCCAAAAA
TATACCGTTTTCCCCCAATTTTTTTCCAGTCTTTGATTTTTTTCCGGCGT
GTGGCTCTTTATTAACTTGAAATTACAGTACCGTCACAAAAAAATAAAAA
TGACAATCATGTTTTGTTTTTCTCGAGCCTATATTTTCGCCCTTGGTCTG
GAGATCATTAGGATGGCTGGAAATCAGGCTGAATCGACGTCTTGTAAACG
TTACGGCAGAAAACAAACGTGATTGGCCAAATTGTTGTGCACGGACCATA
CATCGGGGAAGGGACACACGAGAGGGTTGGGGTCCACCGTGAGTGAATAC
AAGCACATATTTGATCGAAACAACAGCACAGAGTCGCGCGAAGTTCAGGT
CCAGTTTTGGTAGCTTATTTCCTCTTTCTGTGAAAAGCTGGTCCACGCTT
TTGCGGCAGGCGTATTGGTGATGGATGCCCCAACCATCATTGTTGGTCGA
TCTCGGTGTTGTGTACATACATACGTTGTTGTGTGTAACTGCTGTAGTCC
ACGGCCCCGCTTGTGTGTACGCTGGCTGGCAGCCTTCGCGCTCTGGTGGA
CAGTATGCAGATGGACCTCCAGATGGCGAACGCCAGACTCTACGACGAGC
TGCAAACGCCTTCCAGGGACCGGAGTCCGTCCCCAGCACGGGTAAGAGAA
AGGGTGAGACAGCGGAGAGGTCGCCGCCGCAGGTACCTTGATACCTGTGG
GGTTGCATCGTCTATGGTTTAAATAGCTGTGTCTTTGCTGTCTTGTGACT
GGGAGCACCCACCCGCATAGAGACACTCATACGTTTCACGGGACGCACTC
GTTTCGCGGACCACGGGCTCCCCTCTCTCGGCGTAGGCCTAGCCGAAAAG
CTGTGATCCGCATCCGTCGATGCGATGCGAGAGAGCGCACACGACGATTC
AGTGTCGTTTTGAACCGATTGTCATGATGGAGGGGATGGAAAAACAATGA
GAAAAAAAGGAGATGCATGTATATACGAAACAATGTTCGGCACGCGAGAG
GTTCCGTAAGTGCCTCTTTCTCTTCCTCTCGTTCTTTTCGTGGGCCAACC
CACGGATGCCAACAGACTGCTCTTGTTCTCTTCGTGGGCCAATGGGTGCC
AACAGACGACTTGATGATAAACTTGCCCCTTGGAGGGCCCCGTCCCGAGA
CACTGCCACGCAGATGCTGCCCGTGTGACCCCGCAGGCAAAAGCTGTCTT
GATCGTTATAATACATTTACCTACCGCCGTTTTCCGCCTCTTGTGCTCCT
GTTTTTTTTCTTCGTATTTTTTGTGTGTTGATCGTGTTTTCCTCTTCTTC
AGGCGCCTAAGCACCGAGGAGGCGTCGGGGGAGTCGACGCCTCTGGGTCC
TTAGGAAAGTCTTCTTCTTTCATGTCGCCGGAGAACATGGCTCCTCTGCG
TAAACGCGTCGGTTCTGCGAACTCGTCTATCGGAGGAGAGCTAGAGGCAA
TCGTGGAAACGGAGGACGAAGAAGTCAGCATTGTGTAATTTGCGGGGTGG
GGTGACTGGTCTTTTTGGGAACTCAGACAAAAGGCTTCGTGTCGGATTGG
TTTCGGGGTTTCGTGGCCGGCAGTGTTGGACTAGTCGGCTGCCGTCGTCT
TCGCCTTCCACGGCATCTATTACTCTGAAGGCAGCAGCCGTCTGCCGTGT
TGGTTGACTCACGGCACAGTTGCCGATTTTTCCGAGAGTTAAATTTCACT
TGTGATCATTCTCGTATGTGTGTCTGTGTTGTTTGTACTTTCGGCTTGTT
CATTGTCCGATGCCCTTTCCTTCTTGCTGTGTGTTTCGTGTGTGCGATAC
AATGGTTTGGGAGGACTAGATTGGTGTGCCTGACCTGACCGACGAGAACC
CGGCGTACCGAGACAATACCAGGAGGTGTTATCCCCCGCGGTTGGTGATG
TTGGCTTGTCCACTTATGTTTTCACCTCACAAACAAACCAAAGCGTATAG
AGGGGAGCGGAAGGCTCCAGACTATCTGTGCCCGGTGTTTGTTTTTTGTG
CTTTGCCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6789:2624..5433+

>mRNA_L-elsbetiae_contig6789.15544.1 ID=mRNA_L-elsbetiae_contig6789.15544.1|Name=mRNA_L-elsbetiae_contig6789.15544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig6789:2624..5433+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGAGAGCCTGTGCCGCCTTGAAACGGAAAACGCCAGATGCAAGAG
AGCCTGTGCCGCCTTGAAACGGAAAACGCCAGCCTTCGCGCTCTGGTGGA
CAGTATGCAGATGGACCTCCAGATGGCGAACGCCAGACTCTACGACGAGC
TGCAAACGCCTTCCAGGGACCGGAGTCCGTCCCCAGCACGGCCTTCGCGC
TCTGGTGGACAGTATGCAGATGGACCTCCAGATGGCGAACGCCAGACTCT
ACGACGAGCTGCAAACGCCTTCCAGGGACCGGAGTCCGTCCCCAGCACGG
GCGCCTAAGCACCGAGGAGGCGTCGGGGGAGTCGACGCCTCTGGGTCCTT
AGGAAAGTCTTCTTCTTTCATGTCGCCGGAGAACATGGCTCCTCTGCGTA
AACGCGTCGGTTCTGCGAACTCGTCTATCGGAGGAGAGCTAGAGGCAATC
GTGGAAACGGAGGACGAAGAAGTCAGCATTGTGTAAGCGCCTAAGCACCG
AGGAGGCGTCGGGGGAGTCGACGCCTCTGGGTCCTTAGGAAAGTCTTCTT
CTTTCATGTCGCCGGAGAACATGGCTCCTCTGCGTAAACGCGTCGGTTCT
GCGAACTCGTCTATCGGAGGAGAGCTAGAGGCAATCGTGGAAACGGAGGA
CGAAGAAGTCAGCATTGTGTAA
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