mRNA_L-elsbetiae_contig6788.15543.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6788.15543.1
Unique NamemRNA_L-elsbetiae_contig6788.15543.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Match: A0A6H5L457_9PHAE (zf-Tim10_DDP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L457_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 3.210e-51
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 MSPVQQQEFLQHLESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQQKAKDEVAGAPR 264
            M+PVQQQ+FLQHLESQQR+DSLAMYNNLVFRCFDEC+KSFRSKRLDDGETKCINVCAEK+IKLTSRVALRFQDIQQQKAKDE AG  R
Sbjct:    1 MTPVQQQDFLQHLESQQRKDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKYIKLTSRVALRFQDIQQQKAKDEAAGVQR 88
[Close]
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Match: A0A024TE29_9STRA (zf-Tim10_DDP domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TE29_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.430e-22
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 MSPVQQQEFLQHLESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQ 228
            + P QQQE ++H E +Q  +SL +YN +V  CF+EC +SFRSK+L+D E  C+N+CAEKF+K T RV +RF + QQ
Sbjct:    7 LPPHQQQELMKHFEQKQLEESLMLYNRVVATCFNECVQSFRSKKLEDKEENCMNLCAEKFLKHTQRVGVRFAEAQQ 82
[Close]
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Match: A0A1E7F1Y1_9STRA (Mitochondrial import inner membrane translocase subunit Tim9 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F1Y1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.330e-21
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 MSPVQQQEFLQHLESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQD 219
            + P +QQEF+QHLE  Q +DSL+MYN LV RCFD C  SFRSK LD  E  C+  C+ ++IK+T RV LRF +
Sbjct:    7 LPPYKQQEFMQHLEQMQLKDSLSMYNRLVERCFDGCVSSFRSKTLDKSEISCMENCSGRYIKMTQRVGLRFAE 79
[Close]
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Match: B7G5E1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5E1_PHATC)

HSP 1 Score: 89.7 bits (221), Expect = 1.340e-21
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 MSPVQQQEFLQHLESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQQKAK 240
            ++P QQQ F++ +E  Q +DSL+MYNNLV RCFD C  SFRSK LD  E  CI  CA++++K+T RV LRF + Q  + K
Sbjct:    7 LAPHQQQAFMKEMEHMQLKDSLSMYNNLVGRCFDGCVTSFRSKTLDKSEISCIEHCADRYVKMTQRVGLRFAEHQAMQQK 86
[Close]
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Match: W4FPA0_9STRA (zf-Tim10_DDP domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPA0_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.850e-19
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 MSPVQQQEFLQHLESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQ 228
            + P QQQE ++H E +Q  +SL +YN +V  CF+EC +SFRSK+L+D E  C+N+CAEKF+K T RV +RF + QQ
Sbjct:    7 LPPHQQQELMKHFEQKQLEESLMLYNRVVATCFNECVQSFRSKKLEDKEVNCMNLCAEKFLKHTQRVGVRFAEAQQ 82
[Close]
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Match: A0A1Y1IU56_KLENI (Mitochondrial import inner membrane translocon protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IU56_KLENI)

HSP 1 Score: 77.4 bits (189), Expect = 9.240e-17
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   31 QHLESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDI 222
            Q +E  Q RDSL MYNNLV +CF  C  +FR K LD  E KCI  CAEKF+K T+RV++RF ++
Sbjct:   19 QMVEQMQMRDSLRMYNNLVEKCFSNCVDTFRRKTLDKDEDKCIRRCAEKFLKHTARVSMRFAEL 82
[Close]
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Match: B8LM74_PICSI (zf-Tim10_DDP domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LM74_PICSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.050e-16
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   16 QQEFLQHLESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQ 228
            QQ   + +E  Q RDSL MYN+LV RCFD C  SFR K LD  E  C+  CAEKF+K + RV++RF ++ Q
Sbjct:   17 QQRMTKMIEQFQIRDSLRMYNSLVERCFDHCVDSFRRKSLDKQEETCVQRCAEKFLKHSMRVSMRFAELNQ 87
[Close]
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Match: UPI001CB9A365 (mitochondrial import inner membrane translocase subunit Tim9 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9A365)

HSP 1 Score: 75.5 bits (184), Expect = 5.740e-16
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    7 PVQQQEFLQHLESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQ 228
            P  Q      +E  Q RDSL MYNNLV RCF +C +SF+ K LD  E  C+  CAEKF+K + RV LRF ++ Q
Sbjct:   14 PEDQARMTSMIEQLQIRDSLRMYNNLVERCFTDCVESFKRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQ 87
[Close]
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Match: TIM9_MESCR (Mitochondrial import inner membrane translocase subunit Tim9 n=3 Tax=Caryophyllales TaxID=3524 RepID=TIM9_MESCR)

HSP 1 Score: 75.1 bits (183), Expect = 8.140e-16
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   37 LESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQ 228
            +E  Q RDSL MYNNLV RCF +C  SFR K LD  E  C+  CAEKF+K + RV LRF ++ Q
Sbjct:   24 IEQLQIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQ 87
[Close]
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Match: A0A7S4QMN2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QMN2_9DINO)

HSP 1 Score: 75.9 bits (185), Expect = 1.300e-15
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:    1 MSPVQQQEFLQHLESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQQ 231
            +S   Q + L  L   Q  +S+  YNNLV RCF+EC   FR+K +D  E +C+  C +KF+  T RVALRFQ+ QQQ
Sbjct:   55 LSQRDQHKVLAQLNDMQMAESMNTYNNLVERCFNECITDFRTKSIDSSEEQCVKRCVQKFMSFTQRVALRFQEKQQQ 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6788.15543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L457_9PHAE3.210e-5190.91zf-Tim10_DDP domain-containing protein n=2 Tax=Ect... [more]
A0A024TE29_9STRA8.430e-2252.63zf-Tim10_DDP domain-containing protein n=4 Tax=Aph... [more]
A0A1E7F1Y1_9STRA1.330e-2156.16Mitochondrial import inner membrane translocase su... [more]
B7G5E1_PHATC1.340e-2152.50Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
W4FPA0_9STRA2.850e-1952.63zf-Tim10_DDP domain-containing protein n=2 Tax=Aph... [more]
A0A1Y1IU56_KLENI9.240e-1756.25Mitochondrial import inner membrane translocon pro... [more]
B8LM74_PICSI4.050e-1652.11zf-Tim10_DDP domain-containing protein n=1 Tax=Pic... [more]
UPI001CB9A3655.740e-1650.00mitochondrial import inner membrane translocase su... [more]
TIM9_MESCR8.140e-1656.25Mitochondrial import inner membrane translocase su... [more]
A0A7S4QMN2_9DINO1.300e-1546.75Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6788contigL-elsbetiae_contig6788:7021..8844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.1e-39
Seed eggNOG ortholog2880.D7G6I8
Preferred nameTIMM9
KEGG koko:K17777,ko:K17779
KEGG TC3.A.8.1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001666,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007155,GO:0007160,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008565,GO:0009628,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022610,GO:0022804,GO:0022857,GO:0022884,GO:0031090,GO:0031224,GO:0031589,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0036293,GO:0036294,GO:0040008,GO:0040014,GO:0042221,GO:0042719,GO:0042721,GO:0042802,GO:0042803,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048638,GO:0050789,GO:0050793,GO:0050877,GO:0050896,GO:0050954,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070482,GO:0070585,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
EggNOG free text desc.chaperone-mediated protein transport
EggNOG OGsKOG3479@1,KOG3479@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Ec32 ortholog descriptionMitochondrial protein import TIM9.10 complex subunit, Tim9 homolog
Ec32 orthologEc-05_006340.1
Exons3
Model size267
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6788.15543.1prot_L-elsbetiae_contig6788.15543.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6788 7021..8844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.652123-CDS-L-elsbetiae_contig6788:7020..71731622816751.652123-CDS-L-elsbetiae_contig6788:7020..7173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6788 7021..7173 -
1691683786.2771003-CDS-L-elsbetiae_contig6788:7020..71731691683786.2771003-CDS-L-elsbetiae_contig6788:7020..7173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6788 7021..7173 -
1622816751.6671307-CDS-L-elsbetiae_contig6788:8087..81501622816751.6671307-CDS-L-elsbetiae_contig6788:8087..8150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6788 8088..8150 -
1691683786.2885246-CDS-L-elsbetiae_contig6788:8087..81501691683786.2885246-CDS-L-elsbetiae_contig6788:8087..8150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6788 8088..8150 -
1622816751.678911-CDS-L-elsbetiae_contig6788:8793..88441622816751.678911-CDS-L-elsbetiae_contig6788:8793..8844Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6788 8794..8844 -
1691683786.2985506-CDS-L-elsbetiae_contig6788:8793..88441691683786.2985506-CDS-L-elsbetiae_contig6788:8793..8844Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6788 8794..8844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6788.15543.1

>prot_L-elsbetiae_contig6788.15543.1 ID=prot_L-elsbetiae_contig6788.15543.1|Name=mRNA_L-elsbetiae_contig6788.15543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MSPVQQQEFLQHLESQQRRDSLAMYNNLVFRCFDECAKSFRSKRLDDGET
KCINVCAEKFIKLTSRVALRFQDIQQQKAKDEVAGAPR*
back to top

mRNA from alignment at L-elsbetiae_contig6788:7021..8844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6788.15543.1 ID=mRNA_L-elsbetiae_contig6788.15543.1|Name=mRNA_L-elsbetiae_contig6788.15543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1824bp|location=Sequence derived from alignment at L-elsbetiae_contig6788:7021..8844- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCCTGTCCAGCAGCAGGAGTTCTTGCAGCACTTGGAGAGCCAACA
GGTGTGACTTGCGGAGGGAAAACGAATATGCCCCCGTGATAGAGGGTCGG
CCGTCCGTTGAATGGACTGACTGTGTATGTACATACCTCTCTCTCGGTGT
CCCCAAAGGCCCGCTCCCGCTCGGCGCTACTAAATATAAGCAGAAGACTA
GTACGCCGCGAGTATGTACCTAAATGGAGATTGTTTATCTTAGCTAGACT
TCTATGTACGTGCAACGTGCTTCCTCTTTTCATTCAGCCCGCGACGAAAC
CACGCGGAAAGGTGAACACATTTGGTGCCCGTAGAAAACCAGCACAGATA
CATAAGCGGGGTAAAAGCTCAACCAAGAGGCAGTAGGTACAATGAACGGC
ATCAGTATGTAACGGGATTTTCTCCTGAGCTGTGGTAAAGGGTCGCATTC
ATTGATAAGAAAGCGCTACTTACCCACTACACCCAGCAACTTTTCTGCTT
GTCTGAAATCTGCGCGGAAGAGTTCGTTTCCCCGGCAATCGGGGTCTCGC
TTGACATGCATGCCCCCACGCCCCCCGCCGCGCGGTCCACCACCCCTGCT
CTCACACCCGCCGATGCCATTCCGAATCCCTCCCACGTGTGTGGCGTTTC
GCTCGCATCGCCATCGCGGCCGAAACGAACCTTGGTTTCGACAGAGGAGA
GACTCGCTGGCGATGTACAACAACCTGGTGTTCCGGTGCTTCGACGAGTG
CGCAAAGGTCGGTTTAGTCGGCCGGGATAGAATTGACGCTACCTATCGTG
GGGCCGTTTTGTTTGGAGTGTTTGCACGCGTGCGTGAAGGGGTCTAACGT
GCATACATACATACATACGAAGTGCATACATGGGGTATACAACGCGCATT
TTGCGCGCGGAGTGTTGGTATGCCTACAGTAGTACCGGCTCTCCTCCGAA
AACCCGCCTTGTTTTTGAGTTTCTTGTACGTATTTTTTTTTTTTTTGTCT
GCCCATTATTGGATTTTGTCGTCTGCCCCTCTGGCCCCCATCCTCCACTT
CTACTCTAGCTAGACGACCCAACCGGGGTCACATACGTATAATATCTGCG
GAGTGATCAGGTATTTAGAACCCTGAATCTTCCATTCGCGCAAGAGGAAG
GCCTCGAAAAGGCTTCACGGCGCTCTCGGCGCTTGGTGCTTCGCAAGGGC
GGTCCAGCGAATACCTGGCGTATGTACTTCGTCCCGGAAGGCTTTGTTTA
TGGCCCCGCAAGGTGGAATGCACGAACACGGGACCCCCCCCCCCCCCTCC
CGGCCACGGTTGACCTCAGCACGGAGCGTTCGAAACGAGGTACAATAGGT
CTCCGACGATGGCGATACGAAGGCCGCACGACCAATGCTTCGGTGTTTTG
CACCGCTGTTTTCGCTACGCAGGTTGTATGTATGTGTGTAGTTATGACAT
GCGCGTGGCCGTATCCCAACGTCGTCTCTCATCTGTCCGGGGCTGTAAGT
AAGCGTGTGTGTGCGTGTGTGTGTGTGCGTGTGTATGTGTGTGTGTGTTT
GTTTTTTAAGCCTCGTCCTGCCATGCGACTGCAATTTTTTGACCCCCCCC
TCCCCCTCCCCCGCCTTGCCGCGGTTTAACCACCTGGCCCTGTTTGTGCG
CTCTCTTTTTCGTTTCCCCAGAGCTTCCGAAGCAAGCGATTAGACGACGG
CGAGACAAAGTGCATCAACGTGTGCGCGGAGAAGTTCATCAAGCTCACGA
GCAGGGTAGCGTTGCGATTCCAGGATATCCAGCAGCAGAAAGCCAAGGAC
GAAGTGGCCGGGGCACCACGCTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6788:7021..8844-

>mRNA_L-elsbetiae_contig6788.15543.1 ID=mRNA_L-elsbetiae_contig6788.15543.1|Name=mRNA_L-elsbetiae_contig6788.15543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig6788:7021..8844- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCCTGTCCAGCAGCAGGAGTTCTTGCAGCACTTGGAGAGCCAACA
GATGTCGCCTGTCCAGCAGCAGGAGTTCTTGCAGCACTTGGAGAGCCAAC
AGAGGAGAGACTCGCTGGCGATGTACAACAACCTGGTGTTCCGGTGCTTC
GACGAGTGCGCAAAGAGGAGAGACTCGCTGGCGATGTACAACAACCTGGT
GTTCCGGTGCTTCGACGAGTGCGCAAAGAGCTTCCGAAGCAAGCGATTAG
ACGACGGCGAGACAAAGTGCATCAACGTGTGCGCGGAGAAGTTCATCAAG
CTCACGAGCAGGGTAGCGTTGCGATTCCAGGATATCCAGCAGCAGAAAGC
CAAGGACGAAGTGGCCGGGGCACCACGCTGAAGCTTCCGAAGCAAGCGAT
TAGACGACGGCGAGACAAAGTGCATCAACGTGTGCGCGGAGAAGTTCATC
AAGCTCACGAGCAGGGTAGCGTTGCGATTCCAGGATATCCAGCAGCAGAA
AGCCAAGGACGAAGTGGCCGGGGCACCACGCTGA
back to top