mRNA_L-elsbetiae_contig6787.15542.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6787.15542.1
Unique NamemRNA_L-elsbetiae_contig6787.15542.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6787.15542.1 vs. uniprot
Match: A0A6H5KCW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.550e-11
Identity = 49/126 (38.89%), Postives = 61/126 (48.41%), Query Frame = 2 
Query:    5 DVLQSSTTVIYSDEHLGISSAIKAKAAAVTQRCCAAHLAKNFPGPGIGSIVNGWFFHAFRAPTKVQCDNILLTKMKPDKPRAYAALTRRN-PREYAHWA*AEG---AVIMDQVTSNGAESTMNMVG 370
            +VL S  T +++D+H     AI   A     R C  H  K  P    G  V  W +HA RAPT+ +    + TK+KP KP+AYAAL   N P E   W    G     I   V+SN AE  M MVG
Sbjct:   45 EVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHIKALP-EAPGQTVTHWLYHAARAPTRTK---FMDTKVKPTKPKAYAALLDPNKPHELVKWTHHAGPTDTAIGGVVSSNAAEQNMAMVG 166
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BLAST of mRNA_L-elsbetiae_contig6787.15542.1 vs. uniprot
Match: A0A6H5K832_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K832_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.170e-10
Identity = 49/126 (38.89%), Postives = 61/126 (48.41%), Query Frame = 2 
Query:    5 DVLQSSTTVIYSDEHLGISSAIKAKAAAVTQRCCAAHLAKNFPGPGIGSIVNGWFFHAFRAPTKVQCDNILLTKMKPDKPRAYAALTRRN-PREYAHWA*AEG---AVIMDQVTSNGAESTMNMVG 370
            +VL S  T +++D+H     AI   A     R C  H  K  P    G  V  W +HA RAPT+ +    + TK+KP KP+AYAAL   N P E   W    G     I   V+SN AE  M MVG
Sbjct:  153 EVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHIKALP-EAPGQTVTHWLYHAARAPTRTK---FMDTKVKPTKPKAYAALLDPNKPHELVKWTHHAGPTDTAIGGVVSSNAAEQNMVMVG 274
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BLAST of mRNA_L-elsbetiae_contig6787.15542.1 vs. uniprot
Match: A0A6H5KJU4_9PHAE (MULE domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.260e-10
Identity = 49/126 (38.89%), Postives = 61/126 (48.41%), Query Frame = 2 
Query:    5 DVLQSSTTVIYSDEHLGISSAIKAKAAAVTQRCCAAHLAKNFPGPGIGSIVNGWFFHAFRAPTKVQCDNILLTKMKPDKPRAYAALTRRN-PREYAHWA*AEG---AVIMDQVTSNGAESTMNMVG 370
            +VL S  T +++D+H     AI   A     R C  H  K  P    G  V  W +HA RAPT+ +    + TK+KP KP+AYAAL   N P E   W    G     I   V+SN AE  M MVG
Sbjct:   45 EVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHIKALP-EAPGQTVTHWLYHAARAPTRTK---FMDTKVKPTKPKAYAALLDPNKPHELVKWTHHAGPTDTAIGGVVSSNAAEQNMVMVG 166
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BLAST of mRNA_L-elsbetiae_contig6787.15542.1 vs. uniprot
Match: A0A6H5KKM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKM9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.180e-9
Identity = 35/76 (46.05%), Postives = 43/76 (56.58%), Query Frame = 2 
Query:  155 VNGWFFHAFRAPTKVQCDNILLTKMKPDKPRAYAALTRRN-PREYAHWA*AEG---AVIMDQVTSNGAESTMNMVG 370
            V  W +HA RAPT+ +  +I+ TK+KP KP+AYAAL   N P E   W    G     I   V+SN AE  M MVG
Sbjct:   47 VTHWLYHAARAPTRTKFMDIMDTKVKPTKPKAYAALLDPNKPHELVKWTQHAGPTDTAIGGAVSSNAAEQNMAMVG 122
[Close]
BLAST of mRNA_L-elsbetiae_contig6787.15542.1 vs. uniprot
Match: A0A6H5KEB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.030e-7
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 2 
Query:  155 VNGWFFHAFRAPTKVQCDNILLTKMKPDKPRAYAALTRRN-PREYAHWA*AEG---AVIMDQVTSNGAESTMNMVG 370
            V  W +HA RAPT+ +  +I+ TK+KP KP+AYAAL   N P E   W    G     I   V+S+ AE  M MVG
Sbjct:   14 VTHWLYHAARAPTRTKFMDIMDTKVKPTKPKAYAALLDSNKPHELVRWTHHAGPTDTAIGGVVSSDAAEQNMAMVG 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6787.15542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KCW3_9PHAE4.550e-1138.89MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K832_9PHAE1.170e-1038.89MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KJU4_9PHAE1.260e-1038.89MULE domain-containing protein n=6 Tax=Ectocarpus ... [more]
A0A6H5KKM9_9PHAE6.180e-946.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB7_9PHAE2.030e-744.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6787contigL-elsbetiae_contig6787:3813..4718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.5050983-CDS-L-elsbetiae_contig6787:3814..40381622816751.5050983-CDS-L-elsbetiae_contig6787:3814..4038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 3815..4038 -
1691683786.1749692-CDS-L-elsbetiae_contig6787:3814..40381691683786.1749692-CDS-L-elsbetiae_contig6787:3814..4038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 3815..4038 -
1622816751.5183506-CDS-L-elsbetiae_contig6787:4567..47181622816751.5183506-CDS-L-elsbetiae_contig6787:4567..4718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 4568..4718 -
1691683786.1868203-CDS-L-elsbetiae_contig6787:4567..47181691683786.1868203-CDS-L-elsbetiae_contig6787:4567..4718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 4568..4718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6787.15542.1prot_L-elsbetiae_contig6787.15542.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6787 3815..4718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6787.15542.1

>prot_L-elsbetiae_contig6787.15542.1 ID=prot_L-elsbetiae_contig6787.15542.1|Name=mRNA_L-elsbetiae_contig6787.15542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
ERRPPELHDRHLLGRAPGHLICDQGQGCCRHPEVLRSTPCEELPRTRHRL
DCERVVFPRVQGTHQGPVRQHLANEDEAGQTSGVRGSHEAQPARVCALGV
GRGCRDHGPGHEQRRRVHHEHGRKR
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mRNA from alignment at L-elsbetiae_contig6787:3813..4718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6787.15542.1 ID=mRNA_L-elsbetiae_contig6787.15542.1|Name=mRNA_L-elsbetiae_contig6787.15542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig6787:3813..4718- (Laminarionema elsbetiae ELsaHSoW15)
GAACGACGTCCTCCAGAGCTCCACGACCGTCATCTACTCGGACGAGCACC
TGGGCATCTCATCTGCGATCAAGGCCAAGGCTGCTGCCGTCACCCAGAGG
TGCTGCGCAGCACACCTTGCGAAGAACTTCCCCGGACCCGGCATCGGCTC
GGTAAGAAGTGTTTGAGAGTTCGAAGAACCGTGCGGCATGCATGCTGCTG
TTCCAAACAAAAGCCCCTTCAGGAATTAATAAGCGAATAAATACCCTTCA
CCCTGTTTTTGGTTGGTCACACAGGAGAGCTATGTCGGCTCGAGATGGAG
AAGTTTGCCGGCCGCTGTTGCCCTTCTTTTGTCGAGCACGCTGCTTGTGT
TGTACCGTCTTCGATATGATAGAGGTGGCCCAGAAAACAGCTTCTCTCTC
TGCACCCGATGTGTTGTGATGTCACGTGGCGTGCTTCTTTTGTGGGTGAC
ATGCCAATATCTGCCCCTTCGCATGTCGCATTTTGTTCATGTTTTTTTTC
ATTCGATCACAGTGGTTGGTAGGCAACAGCAGACTGCTAGGGTGCTGTAG
CGCCGGTCCGGTTGATGAAAATGTTTCAGGCGTTGTTGCCGTTTGATCTT
CCGTTCATGGGGTCGGTGCAAGGGCTAGCTCGTATTGATCCTTGTTTCGC
CGCGCGCGTTTGCTTGTGTACCCATTGTAGATTGTGAACGGGTGGTTTTT
CCACGCGTTCAGGGCACCCACCAAGGTCCAGTGCGACAACATCTTGCTAA
CGAAGATGAAGCCGGACAAACCTCGGGCGTACGCGGCTCTCACGAGGCGC
AACCCGCGCGAGTATGCGCACTGGGCGTAGGCCGAGGGTGCCGTGATCAT
GGACCAGGTCACGAGCAACGGCGCCGAGTCCACCATGAACATGGTCGGAA
AAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6787:3813..4718-

>mRNA_L-elsbetiae_contig6787.15542.1 ID=mRNA_L-elsbetiae_contig6787.15542.1|Name=mRNA_L-elsbetiae_contig6787.15542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig6787:3813..4718- (Laminarionema elsbetiae ELsaHSoW15)
GAACGACGTCCTCCAGAGCTCCACGACCGTCATCTACTCGGACGAGCACC
TGGGCATCTCATCTGCGATCAAGGCCAAGGCTGCTGCCGTCACCCAGAGG
TGCTGCGCAGCACACCTTGCGAAGAACTTCCCCGGACCCGGCATCGGCTC
GGAACGACGTCCTCCAGAGCTCCACGACCGTCATCTACTCGGACGAGCAC
CTGGGCATCTCATCTGCGATCAAGGCCAAGGCTGCTGCCGTCACCCAGAG
GTGCTGCGCAGCACACCTTGCGAAGAACTTCCCCGGACCCGGCATCGGCT
CGATTGTGAACGGGTGGTTTTTCCACGCGTTCAGGGCACCCACCAAGGTC
CAGTGCGACAACATCTTGCTAACGAAGATGAAGCCGGACAAACCTCGGGC
GTACGCGGCTCTCACGAGGCGCAACCCGCGCGAGTATGCGCACTGGGCGT
AGGCCGAGGGTGCCGTGATCATGGACCAGGTCACGAGCAACGGCGCCGAG
TCCACCATGAACATGGTCGGAAAAGAATTGTGAACGGGTGGTTTTTCCAC
GCGTTCAGGGCACCCACCAAGGTCCAGTGCGACAACATCTTGCTAACGAA
GATGAAGCCGGACAAACCTCGGGCGTACGCGGCTCTCACGAGGCGCAACC
CGCGCGAGTATGCGCACTGGGCGTAGGCCGAGGGTGCCGTGATCATGGAC
CAGGTCACGAGCAACGGCGCCGAGTCCACCATGAACATGGTCGGAAAAGA
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