mRNA_L-elsbetiae_contig6786.15538.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6786.15538.1
Unique NamemRNA_L-elsbetiae_contig6786.15538.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6786.15538.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.010e-14
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = -2 
Query:   87 AVDADVPSEEKYEDMSRRVEEEVVAKLARAQMMGMMLKAHRE 212
            AVDADVPSEE+YEDMSRRVEEEVVAKLARAQMMGMMLKAHRE
Sbjct:   91 AVDADVPSEERYEDMSRRVEEEVVAKLARAQMMGMMLKAHRE 132
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6786.15538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G542_ECTSI1.010e-1497.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6786contigL-elsbetiae_contig6786:2169..2495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.42166-CDS-L-elsbetiae_contig6786:2168..24951622816751.42166-CDS-L-elsbetiae_contig6786:2168..2495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6786 2169..2495 +
1691683786.1405463-CDS-L-elsbetiae_contig6786:2168..24951691683786.1405463-CDS-L-elsbetiae_contig6786:2168..2495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6786 2169..2495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6786.15538.1prot_L-elsbetiae_contig6786.15538.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6786 2169..2495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6786.15538.1

>prot_L-elsbetiae_contig6786.15538.1 ID=prot_L-elsbetiae_contig6786.15538.1|Name=mRNA_L-elsbetiae_contig6786.15538.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
PPSLRLPPPPPPPPLPPPPPRRLSAACSCSRWALSIIPIICARASFATTS
SSTLRDMSSYFSSDGTSASTAGAGSIPPLPLPPPPDLSPLAPLPRAGAAA
AAGVPRPAT
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mRNA from alignment at L-elsbetiae_contig6786:2169..2495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6786.15538.1 ID=mRNA_L-elsbetiae_contig6786.15538.1|Name=mRNA_L-elsbetiae_contig6786.15538.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=327bp|location=Sequence derived from alignment at L-elsbetiae_contig6786:2169..2495+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCGTCTCTCCGACTGCCCCCCCCGCCGCCGCCGCCGCCGCTCCCGCC
CCCGCCGCCGCGGCGTCTCTCGGCCGCCTGTTCCTGCTCTCGGTGGGCCT
TGAGCATCATCCCCATCATCTGCGCGCGCGCCAGCTTCGCCACGACCTCT
TCCTCCACCCTCCGCGACATGTCCTCGTACTTCTCTTCGGACGGCACGTC
CGCGTCCACAGCGGGCGCAGGTTCGATTCCGCCGCTACCGCTACCGCCGC
CGCCGGACCTATCTCCCCTCGCTCCTCTGCCCCGCGCCGGGGCGGCGGCG
GCGGCGGGGGTTCCACGCCCGGCGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6786:2169..2495+

>mRNA_L-elsbetiae_contig6786.15538.1 ID=mRNA_L-elsbetiae_contig6786.15538.1|Name=mRNA_L-elsbetiae_contig6786.15538.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig6786:2169..2495+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCGTCTCTCCGACTGCCCCCCCCGCCGCCGCCGCCGCCGCTCCCGCC
CCCGCCGCCGCGGCGTCTCTCGGCCGCCTGTTCCTGCTCTCGGTGGGCCT
TGAGCATCATCCCCATCATCTGCGCGCGCGCCAGCTTCGCCACGACCTCT
TCCTCCACCCTCCGCGACATGTCCTCGTACTTCTCTTCGGACGGCACGTC
CGCGTCCACAGCGGGCGCAGGTTCGATTCCGCCGCTACCGCTACCGCCGC
CGCCGGACCTATCTCCCCTCGCTCCTCTGCCCCGCGCCGGGGCGGCGGCG
GCGGCGGGGGTTCCACGCCCGGCGACACCGCCGTCTCTCCGACTGCCCCC
CCCGCCGCCGCCGCCGCCGCTCCCGCCCCCGCCGCCGCGGCGTCTCTCGG
CCGCCTGTTCCTGCTCTCGGTGGGCCTTGAGCATCATCCCCATCATCTGC
GCGCGCGCCAGCTTCGCCACGACCTCTTCCTCCACCCTCCGCGACATGTC
CTCGTACTTCTCTTCGGACGGCACGTCCGCGTCCACAGCGGGCGCAGGTT
CGATTCCGCCGCTACCGCTACCGCCGCCGCCGGACCTATCTCCCCTCGCT
CCTCTGCCCCGCGCCGGGGCGGCGGCGGCGGCGGGGGTTCCACGCCCGGC
GACA
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