mRNA_L-elsbetiae_contig6784.15537.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6784.15537.1
Unique NamemRNA_L-elsbetiae_contig6784.15537.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6784.15537.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 3.050e-89
Identity = 217/332 (65.36%), Postives = 235/332 (70.78%), Query Frame = 1 
Query:    1 QVAILVEDVTCRMEEASASQLASVQGRLADGVVSALACAEDPSALQAAGAHVVKARSRLYKSRRVQACLDLLAAFLRALP--DPAPTASTARSPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNG-------ARRSEADLARALVGVAKLLHDSLDLLSSHERQRQASSSAVDLTCDMVDRIGRGWVQVQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASGAAADDGGGTGEASRLALLAECRQAFWGMDEVTDRLVLAAVGLSVRAWRAGSNATARAALCFCSLTVPSVPSAVRRLALLQLCATTALQVGKPSLADALFR 969
            +VAIL+EDV CRME+AS S+LASVQGRLADGV  ALACA+DPSAL+AAG HVVK    L KSRR QACLDLLAA LR+LP   P PT   +  P     XXXXXXXXXXX                 X  G       A + E +LARALVGVAKLLHDS DLLSS ERQRQ   SAV LTCDMVDR+GRGW +   XXXXXXXXXXXXXXXX                             EASRL +LAECRQAFWGMDEVTDRLVLAA GLS+RAWRAGS ATARAALCFCSLTVPSVPSA+RRLALLQLCA+TALQ+GKP+LADALFR
Sbjct:  775 EVAILMEDVACRMEDASTSELASVQGRLADGVAGALACAKDPSALRAAGVHVVKVLGVLDKSRRAQACLDLLAALLRSLPRHTPPPTGRVSARPATTPQXXXXXXXXXXXPESSAPGEREDGRSKSGXXXGEEKKKGAAIKGEVELARALVGVAKLLHDSFDLLSSGERQRQ---SAVALTCDMVDRVGRGWAEPPQXXXXXXXXXXXXXXXX-----------------------------EASRLEVLAECRQAFWGMDEVTDRLVLAAAGLSLRAWRAGSTATARAALCFCSLTVPSVPSALRRLALLQLCASTALQIGKPALADALFR 1074
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BLAST of mRNA_L-elsbetiae_contig6784.15537.1 vs. uniprot
Match: A0A6H5JSK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK9_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 1.410e-79
Identity = 234/445 (52.58%), Postives = 250/445 (56.18%), Query Frame = 1 
Query:    1 QVAILVEDVTCRMEEASASQLASVQGRLADGVVSALACAEDPSALQAAGAHVVKARSRLY-----------------------------------------------------------------------------------------KSRRVQACLDLLAAFLRALP--DPAPT-------ASTARSPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGAR-RSEADLARALVGVAKLLHDSLDLLSSHERQRQASS----------------------SAVDLTCDMVDRIGRGWVQV-QPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASGAAADDGGGTGEASRLALLAECRQAFWGMDEVTDRLVLAAVGLSVRAWRAGSNATARAALCFCSLTVPSVPSAVRRLALLQLCATTALQVGKPSLADALFR 969
            +VAIL+EDV CRME+ASAS+LASVQGRLADGVVSALACA+DPSAL+AAG HVVK    +Y                                                                                         KSRR QACLDLLAAFLRALP   P PT       A+T      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   GA    E +LARALV VAKLLHDS DLLSS ERQRQAS                       SAV LTCDMVDR+GRGW Q  QP                                         GGTGEASRL +LAECRQAFWGMDEVTDRLVLAA GLS+RAWRAGS ATARAALCFCSLTVPSVPSA+RRLALLQLCA+TALQ+GKP+LADALFR
Sbjct:  374 EVAILMEDVACRMEDASASELASVQGRLADGVVSALACAKDPSALRAAGGHVVKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYQKEREVGQRDSVLAVLDKSRRAQACLDLLAAFLRALPRHTPPPTGRVSARSATTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQKGATVNGEVELARALVRVAKLLHDSFDLLSSGERQRQASGAGGWSGCLVQRTWFLVFVCPRQSAVALTCDMVDRVGRGWAQPPQP-----------------------------------------GGTGEASRLEVLAECRQAFWGMDEVTDRLVLAAAGLSLRAWRAGSTATARAALCFCSLTVPSVPSALRRLALLQLCASTALQIGKPALADALFR 777
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6784.15537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLV5_ECTSI3.050e-8965.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSK9_9PHAE1.410e-7952.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6784contigL-elsbetiae_contig6784:260..2519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.2
Seed ortholog evalue5.8e-79
Seed eggNOG ortholog2880.D8LLV5
Preferred nameC16orf62
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0070820,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.protein transport
EggNOG OGsKOG3682@1,KOG3682@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionUPF0505 family
Ec32 orthologEc-14_001830.1
Exons4
Model size969
Cds size969
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6784.15537.1prot_L-elsbetiae_contig6784.15537.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6784 260..2519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.3543317-CDS-L-elsbetiae_contig6784:259..4371622816751.3543317-CDS-L-elsbetiae_contig6784:259..437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6784 260..437 +
1691683786.0848749-CDS-L-elsbetiae_contig6784:259..4371691683786.0848749-CDS-L-elsbetiae_contig6784:259..437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6784 260..437 +
1622816751.3659484-CDS-L-elsbetiae_contig6784:848..11681622816751.3659484-CDS-L-elsbetiae_contig6784:848..1168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6784 849..1168 +
1691683786.0975966-CDS-L-elsbetiae_contig6784:848..11681691683786.0975966-CDS-L-elsbetiae_contig6784:848..1168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6784 849..1168 +
1622816751.3766167-CDS-L-elsbetiae_contig6784:1570..18311622816751.3766167-CDS-L-elsbetiae_contig6784:1570..1831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6784 1571..1831 +
1691683786.1091304-CDS-L-elsbetiae_contig6784:1570..18311691683786.1091304-CDS-L-elsbetiae_contig6784:1570..1831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6784 1571..1831 +
1622816751.3866313-CDS-L-elsbetiae_contig6784:2309..25191622816751.3866313-CDS-L-elsbetiae_contig6784:2309..2519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6784 2310..2519 +
1691683786.1296384-CDS-L-elsbetiae_contig6784:2309..25191691683786.1296384-CDS-L-elsbetiae_contig6784:2309..2519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6784 2310..2519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6784.15537.1

>prot_L-elsbetiae_contig6784.15537.1 ID=prot_L-elsbetiae_contig6784.15537.1|Name=mRNA_L-elsbetiae_contig6784.15537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=323bp
QVAILVEDVTCRMEEASASQLASVQGRLADGVVSALACAEDPSALQAAGA
HVVKARSRLYKSRRVQACLDLLAAFLRALPDPAPTASTARSPLPPPPPPP
EDKGAAAKSGSGQIVGGGGGGGEGGAGNGARRSEADLARALVGVAKLLHD
SLDLLSSHERQRQASSSAVDLTCDMVDRIGRGWVQVQPPPAPPAAAAATA
TATAGAGGGGGAGAGGGGGKASGAAADDGGGTGEASRLALLAECRQAFWG
MDEVTDRLVLAAVGLSVRAWRAGSNATARAALCFCSLTVPSVPSAVRRLA
LLQLCATTALQVGKPSLADALFR
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mRNA from alignment at L-elsbetiae_contig6784:260..2519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6784.15537.1 ID=mRNA_L-elsbetiae_contig6784.15537.1|Name=mRNA_L-elsbetiae_contig6784.15537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2260bp|location=Sequence derived from alignment at L-elsbetiae_contig6784:260..2519+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTGCCATCCTCGTGGAGGACGTGACGTGCAGGATGGAGGAGGCGAG
CGCCTCCCAGCTCGCCTCGGTGCAGGGGCGCTTGGCGGACGGGGTGGTGA
GCGCGCTGGCGTGCGCCGAGGACCCGTCGGCGCTCCAGGCTGCGGGCGCC
CACGTTGTCAAGGCAAGATCTCGTCTCTGTTCTCGTCAAGAGAGAACAGA
CTGTTTAGCAGAGTACGTAACACAGCATTTGGGTGATGTACGTACGATAG
GATAGGATACGATAGCATACGATAGGATAGGATAGGATAGAACAGGACAG
GACAGGACAGGATACGACAAGATAGGATAGGACAGGATATGATACGATAC
GATACGATAGGATAGGATAGGATACGATACGATACGATAGGATAGGACAG
GATAGGATAGGATAAGATAGGGTAGGACAGACAATTAGCTCGGGTTTTAA
TGATTGGCTTTACAATGTCGCCTTGTTTTGTCGACCCCGAGTGACACCCG
GCCGGTCTGCACAGCCTCAAAACGCTCGACGGTCGATGCAACGCCACGCC
GCACACGTCTTGAACAACATCAGATCCTGGCGGCGCTAGACAAGAGCCGG
AGGGTGCAAGCGTGCTTGGATCTACTCGCGGCCTTTCTTCGGGCGTTGCC
TGACCCCGCTCCCACCGCCAGCACCGCTCGCTCGCCCCTTCCGCCCCCGC
CGCCGCCGCCCGAGGATAAAGGGGCGGCCGCAAAGTCTGGAAGCGGTCAG
ATCGTTGGCGGTGGTGGCGGTGGTGGTGAAGGTGGAGCGGGCAACGGGGC
CCGCAGGAGCGAGGCGGACCTGGCGCGGGCTCTCGTTGGCGTGGCCAAGC
TGCTGCACGATAGCTTGGATCTGCTTTCGTCCCACGAGCGACAGAGGCAG
GCAAGCTCGGTCGGGGGCGGGGGGGGGGCGGGGGGAGCTCAAGAGGGGGG
GCGCCTATACACAGTAGCAGCAGGTCGCTGGTGTCTGTTGGTTGTTGCGC
GTGGGCTCTGGTGGCCGCACGATGTGTTTTGCACGCGCAAGATATCTGGC
GTGCACACTTGTTGCCCTTGGTGAGCCGGTCGAGTTTTGCGGTCCCACTC
TTCATTGTTCGTTTTTACCATTGCAACAGCGCACAGCGATCCGTGCACCG
GTTTTGATCTTGGTTTCGGCCGCCGTTGTGCTGGAAGAGAAAACGTAAAC
ACGGTAAAGAGTCACCACACCAGCGGCAAGACCCCAGACATACATACCTG
TAAACTGCCCAGCTTGCGCTTCTTCGACTTTTGTGTTTTTTGCTCTCGCG
ACGAACGATAGAGCGCTGTCGATCTCACGTGCGACATGGTCGATCGGATA
GGAAGGGGGTGGGTGCAGGTGCAGCCACCCCCAGCACCCCCAGCAGCAGC
CGCAGCGACAGCGACAGCGACAGCTGGGGCAGGCGGCGGGGGAGGAGCAG
GAGCAGGAGGAGGAGGAGGAAAAGCGAGCGGTGCTGCGGCTGACGACGGC
GGTGGCACGGGCGAGGCCAGCCGGCTGGCGCTTCTGGCGGAGTGCCGCCA
GGCGTTCTGGGGGATGGACGAGGTGCGGCCGCCGTATGCTCACGCCGCTC
GCTTTAAGAATTACGCAGGCCTGCCTACCTGCGGCCGTCGCGTGGTGTAC
ATACATACATGTACAGGCGTATTTTGCTCACGAGCGTGTACCGTAGTGTA
GTTTCCTCCCCCCCCCCCCCTCCTTCCCCGCTTTCCTTTCTCTTATGTAT
TTCCCTCTTCCCCGGACCGCCTACGCCGGAAAAGAAGTTGATCTAGGAAA
ACAACCCTAACTTGTACCCTTACCCTAACCCTAACCCCAACCACCGACCC
CACTTTACCGGTTTCCATACTTTATCTCATATGTTAGCTCAAGATGAAAA
TATGAAAACCCTGCGAAGACGATTACTGTCGTCCCCAGTCCTGCCCGTCC
CCATTTTTGCCGTACGGTATACTTCTCTCTCTATATATATATCTATACCT
GCCGGGTTTGATGGCTTTCCTTCTGTTTTTTTGGGGGTCTCTGTCTGCAG
GTCACCGACCGGCTCGTGTTGGCGGCGGTGGGACTTTCTGTGCGGGCCTG
GCGCGCCGGGTCGAACGCCACGGCGCGCGCGGCGCTGTGCTTCTGCTCGC
TGACGGTCCCCTCGGTCCCGTCGGCCGTCCGTCGGCTGGCGCTGCTGCAG
CTGTGCGCGACCACCGCCCTGCAGGTTGGAAAGCCGTCCCTGGCAGACGC
TTTGTTCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6784:260..2519+

>mRNA_L-elsbetiae_contig6784.15537.1 ID=mRNA_L-elsbetiae_contig6784.15537.1|Name=mRNA_L-elsbetiae_contig6784.15537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1938bp|location=Sequence derived from alignment at L-elsbetiae_contig6784:260..2519+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTGCCATCCTCGTGGAGGACGTGACGTGCAGGATGGAGGAGGCGAG
CGCCTCCCAGCTCGCCTCGGTGCAGGGGCGCTTGGCGGACGGGGTGGTGA
GCGCGCTGGCGTGCGCCGAGGACCCGTCGGCGCTCCAGGCTGCGGGCGCC
CACGTTGTCAAGGCAAGATCTCGTCTCTCAGGTTGCCATCCTCGTGGAGG
ACGTGACGTGCAGGATGGAGGAGGCGAGCGCCTCCCAGCTCGCCTCGGTG
CAGGGGCGCTTGGCGGACGGGGTGGTGAGCGCGCTGGCGTGCGCCGAGGA
CCCGTCGGCGCTCCAGGCTGCGGGCGCCCACGTTGTCAAGGCAAGATCTC
GTCTCTACAAGAGCCGGAGGGTGCAAGCGTGCTTGGATCTACTCGCGGCC
TTTCTTCGGGCGTTGCCTGACCCCGCTCCCACCGCCAGCACCGCTCGCTC
GCCCCTTCCGCCCCCGCCGCCGCCGCCCGAGGATAAAGGGGCGGCCGCAA
AGTCTGGAAGCGGTCAGATCGTTGGCGGTGGTGGCGGTGGTGGTGAAGGT
GGAGCGGGCAACGGGGCCCGCAGGAGCGAGGCGGACCTGGCGCGGGCTCT
CGTTGGCGTGGCCAAGCTGCTGCACGATAGCTTGGATCTGCTTTCGTCCC
ACGAGCGACAGAGGCAGGCAAGCTCGACAAGAGCCGGAGGGTGCAAGCGT
GCTTGGATCTACTCGCGGCCTTTCTTCGGGCGTTGCCTGACCCCGCTCCC
ACCGCCAGCACCGCTCGCTCGCCCCTTCCGCCCCCGCCGCCGCCGCCCGA
GGATAAAGGGGCGGCCGCAAAGTCTGGAAGCGGTCAGATCGTTGGCGGTG
GTGGCGGTGGTGGTGAAGGTGGAGCGGGCAACGGGGCCCGCAGGAGCGAG
GCGGACCTGGCGCGGGCTCTCGTTGGCGTGGCCAAGCTGCTGCACGATAG
CTTGGATCTGCTTTCGTCCCACGAGCGACAGAGGCAGGCAAGCTCGAGCG
CTGTCGATCTCACGTGCGACATGGTCGATCGGATAGGAAGGGGGTGGGTG
CAGGTGCAGCCACCCCCAGCACCCCCAGCAGCAGCCGCAGCGACAGCGAC
AGCGACAGCTGGGGCAGGCGGCGGGGGAGGAGCAGGAGCAGGAGGAGGAG
GAGGAAAAGCGAGCGGTGCTGCGGCTGACGACGGCGGTGGCACGGGCGAG
GCCAGCCGGCTGGCGCTTCTGGCGGAGTGCCGCCAGGCGTTCTGGGGGAT
GGACGAGAGCGCTGTCGATCTCACGTGCGACATGGTCGATCGGATAGGAA
GGGGGTGGGTGCAGGTGCAGCCACCCCCAGCACCCCCAGCAGCAGCCGCA
GCGACAGCGACAGCGACAGCTGGGGCAGGCGGCGGGGGAGGAGCAGGAGC
AGGAGGAGGAGGAGGAAAAGCGAGCGGTGCTGCGGCTGACGACGGCGGTG
GCACGGGCGAGGCCAGCCGGCTGGCGCTTCTGGCGGAGTGCCGCCAGGCG
TTCTGGGGGATGGACGAGGTCACCGACCGGCTCGTGTTGGCGGCGGTGGG
ACTTTCTGTGCGGGCCTGGCGCGCCGGGTCGAACGCCACGGCGCGCGCGG
CGCTGTGCTTCTGCTCGCTGACGGTCCCCTCGGTCCCGTCGGCCGTCCGT
CGGCTGGCGCTGCTGCAGCTGTGCGCGACCACCGCCCTGCAGGTTGGAAA
GCCGTCCCTGGCAGACGCTTTGTTCAGGGTCACCGACCGGCTCGTGTTGG
CGGCGGTGGGACTTTCTGTGCGGGCCTGGCGCGCCGGGTCGAACGCCACG
GCGCGCGCGGCGCTGTGCTTCTGCTCGCTGACGGTCCCCTCGGTCCCGTC
GGCCGTCCGTCGGCTGGCGCTGCTGCAGCTGTGCGCGACCACCGCCCTGC
AGGTTGGAAAGCCGTCCCTGGCAGACGCTTTGTTCAGG
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