mRNA_L-elsbetiae_contig6782.15536.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6782.15536.1
Unique NamemRNA_L-elsbetiae_contig6782.15536.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Match: D7G1C2_ECTSI (Iron-sulfur cluster assembly protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C2_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 1.120e-88
Identity = 141/150 (94.00%), Postives = 144/150 (96.00%), Query Frame = 2 
Query:  122 IRRSGAAPAACQRRSYHDNIVEHYENPRNVGSLDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGAVPKPAQHAEAA 571
            +RRSGAA  A QRRSYHDNIVEHYENPRNVGS+DK +KFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGAV KPAQHA AA
Sbjct:    1 MRRSGAA-VAHQRRSYHDNIVEHYENPRNVGSMDKKDKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGAVAKPAQHALAA 149
[Close]
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Match: A0A1Z5JMQ2_FISSO (Iron-sulfur cluster assembly protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMQ2_FISSO)

HSP 1 Score: 232 bits (591), Expect = 7.840e-72
Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 2 
Query:  134 GAAPAACQRRSYHDNIVEHYENPRNVGSLDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGA 538
            G A A   RR YH+NIVEHYENPRNVGSLDKN+K VGTGLVGAPACGDVMKLQIKVDENG+ITESKFKTFGCGSAIASSSVATEW+KG+SVDE L IKN+DIA HLKLPPVKLHCSMLAEDAIKAA+KD ++K A
Sbjct:   19 GMAAARLIRRGYHENIVEHYENPRNVGSLDKNDKSVGTGLVGAPACGDVMKLQIKVDENGIITESKFKTFGCGSAIASSSVATEWVKGKSVDEVLSIKNSDIASHLKLPPVKLHCSMLAEDAIKAAVKDWKEKSA 153
[Close]
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Match: G4YNR1_PHYSP (Iron-sulfur cluster assembly protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=G4YNR1_PHYSP)

HSP 1 Score: 227 bits (578), Expect = 5.400e-70
Identity = 117/155 (75.48%), Postives = 132/155 (85.16%), Query Frame = 2 
Query:   86 VARKALG---GSLSAIRRSGAAPA-ACQRRSYHDNIVEHYENPRNVGSLDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGA 538
            +AR AL    G+ SA R++  APA A Q R YH+N+++HYENPRNVG++DKN K VGTGLVGAPACGDVMKLQI+VDENG I +SKFKTFGCGSAIASSSVATEWLKG+SV+E LKIKNTDIA HLKLPPVKLHCSMLAEDAIKAAI D + K A
Sbjct:    2 IARSALKRSLGAFSAARKAAPAPAFAQQTRMYHENVIDHYENPRNVGAMDKNAKDVGTGLVGAPACGDVMKLQIQVDENGTIVDSKFKTFGCGSAIASSSVATEWLKGKSVEECLKIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYKRKQA 156
[Close]
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Match: A0A662Y8J8_9STRA (Iron-sulfur cluster assembly protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8J8_9STRA)

HSP 1 Score: 224 bits (570), Expect = 8.590e-69
Identity = 109/147 (74.15%), Postives = 127/147 (86.39%), Query Frame = 2 
Query:   92 RKALGGSLSAIRRSGAAPAACQRRSYHDNIVEHYENPRNVGSLDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 532
            +++LG    A   + AAP A Q R YH+N+++HYENPRNVG++DKN+K VGTGLVGAPACGDVMKLQI+VDE+G I +SKFKTFGCGSAIASSSVATEWLKG+SV++ LKIKNTDIA HLKLPPVKLHCSMLAEDAIKAAI D + K
Sbjct:    8 KRSLGAFAPAASVARAAPVAGQTRLYHENVIDHYENPRNVGAMDKNSKSVGTGLVGAPACGDVMKLQIEVDEHGTIVDSKFKTFGCGSAIASSSVATEWLKGKSVEDCLKIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYKKK 154
[Close]
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Match: A0A5D6XWY5_9STRA (Iron-sulfur cluster assembly protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWY5_9STRA)

HSP 1 Score: 222 bits (566), Expect = 3.540e-68
Identity = 111/151 (73.51%), Postives = 129/151 (85.43%), Query Frame = 2 
Query:   80 QNVARKALGGSLSAIRRSGAAPAACQRRSYHDNIVEHYENPRNVGSLDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 532
            ++V +++L  +LS      AAPA  Q R YHDN+++HYENPRNVGS+DK+ + VGTGLVGAPACGDVMKLQI+VDENG I +SKFKTFGCGSAIASSSVATEWLKG++V+E L+IKNTDIA HLKLPPVKLHCSMLAEDAIKAAI D Q K
Sbjct:    4 RSVLKRSLASALSTRPAVAAAPAL-QMRRYHDNVIDHYENPRNVGSMDKSARNVGTGLVGAPACGDVMKLQIEVDENGTIVDSKFKTFGCGSAIASSSVATEWLKGKTVEECLQIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYQKK 153
[Close]
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Match: G4ZR66_PHYSP (Iron-sulfur cluster assembly protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZR66_PHYSP)

HSP 1 Score: 222 bits (565), Expect = 4.240e-68
Identity = 114/150 (76.00%), Postives = 129/150 (86.00%), Query Frame = 2 
Query:   86 VARKALGGSLSAIRRSGAAPAACQR-RSYHDNIVEHYENPRNVGSLDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 532
            +AR AL    SA  R+G +PA  Q+ R YH+N+++HYENPRNVG++DK+ K VGTGLVGAPACGDVMKLQI+VDE+G I +SKFKTFGCGSAIASSSVATEWLKGRSVDE LKIKNTDIA HLKLPPVKLHCSMLAEDAIKAAI D + K
Sbjct:    2 LARSAL-KRFSAAARNGTSPAFVQQTRLYHENVIDHYENPRNVGAMDKSAKDVGTGLVGAPACGDVMKLQIQVDEHGTIVDSKFKTFGCGSAIASSSVATEWLKGRSVDECLKIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAISDYKRK 150
[Close]
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Match: D0MWH3_PHYIT (Iron-sulfur cluster assembly protein n=5 Tax=Phytophthora TaxID=4783 RepID=D0MWH3_PHYIT)

HSP 1 Score: 222 bits (565), Expect = 4.680e-68
Identity = 112/152 (73.68%), Postives = 127/152 (83.55%), Query Frame = 2 
Query:   86 VARKALGGSLSAIRRSGA---APAACQRRSYHDNIVEHYENPRNVGSLDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 532
            +AR AL  S+    R  A   APA  + R YHDN+++HYENPRNVG++DK+ K VGTGLVGAPACGDVMKLQI+VDENG I +SKFKTFGCGSAIASSSVATEWLKG+SV+E L+IKNTDIA HLKLPPVKLHCSMLAEDAIKAAI D + K
Sbjct:    2 IARTALKRSMGVFSRPAANVTAPAFTRARMYHDNVIDHYENPRNVGAMDKSAKDVGTGLVGAPACGDVMKLQIQVDENGTIVDSKFKTFGCGSAIASSSVATEWLKGKSVEECLQIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYKRK 153
[Close]
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Match: K3XAL1_GLOUD (Iron-sulfur cluster assembly protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAL1_GLOUD)

HSP 1 Score: 221 bits (564), Expect = 6.620e-68
Identity = 115/153 (75.16%), Postives = 128/153 (83.66%), Query Frame = 2 
Query:   86 VARKALGGSLSAIRRSGAA--PAACQRRSYHDNIVEHYENPRNVGSLDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGA 538
            +AR  L  SL A R + +A   AA Q R YH+N+++HYENPRNVGS+DK  K VGTGLVGAPACGDVMKLQI+VDENG I +SKFKTFGCGSAIASSSVATEWLKG++V+E LKIKNTDIA HLKLPPVKLHCSMLAEDAIKAAI D Q K A
Sbjct:    2 LARSVLKRSLFAARTTPSALSGAAQQTRLYHENVIDHYENPRNVGSMDKKAKNVGTGLVGAPACGDVMKLQIEVDENGTIVDSKFKTFGCGSAIASSSVATEWLKGKTVEECLKIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYQKKQA 154
[Close]
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Match: A0A3R7JQT3_9STRA (Iron-sulfur cluster assembly protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JQT3_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.160e-67
Identity = 116/152 (76.32%), Postives = 128/152 (84.21%), Query Frame = 2 
Query:   86 VARKALGGSLSAIR-RSGAAPAACQRRSYHDNIVEHYENPRNVGSLDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGA 538
            +AR AL  SL A   R  AAP   Q R YH+N+++HYENPRNVG++DKN K VGTGLVGAPACGDVMKLQI+VDENG I +SKFKTFGCGSAIASSSVATEWLKG+SV+E LKIKNTDIA HLKLPPVKLHCSMLAEDAIKAAI D + K A
Sbjct:    2 LARTALKRSLGAFSARVNAAPIG-QTRLYHENVIDHYENPRNVGAMDKNAKDVGTGLVGAPACGDVMKLQIQVDENGTIVDSKFKTFGCGSAIASSSVATEWLKGKSVEECLKIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYKKKQA 152
[Close]
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Match: A0A6U3XMM0_9STRA (Iron-sulfur cluster assembly protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3XMM0_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.370e-67
Identity = 105/129 (81.40%), Postives = 120/129 (93.02%), Query Frame = 2 
Query:  146 AACQRRSYHDNIVEHYENPRNVGSLDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 532
            +A   R+YHDNIVEHYENPRNVGSLDKN+++VGTGLVGAPACGDVMKLQI+VDENGVITESKFKTFGCGSAIASSSV TEW++G+++DE++ IKN DIAG LKLPPVKLHCSMLAEDAIKAA+KD + K
Sbjct:   26 SAGSARTYHDNIVEHYENPRNVGSLDKNSEYVGTGLVGAPACGDVMKLQIRVDENGVITESKFKTFGCGSAIASSSVMTEWVEGKTIDEAMAIKNKDIAGFLKLPPVKLHCSMLAEDAIKAAVKDYKSK 154
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6782.15536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1C2_ECTSI1.120e-8894.00Iron-sulfur cluster assembly protein n=1 Tax=Ectoc... [more]
A0A1Z5JMQ2_FISSO7.840e-7284.44Iron-sulfur cluster assembly protein n=2 Tax=Fistu... [more]
G4YNR1_PHYSP5.400e-7075.48Iron-sulfur cluster assembly protein n=21 Tax=Pero... [more]
A0A662Y8J8_9STRA8.590e-6974.15Iron-sulfur cluster assembly protein n=2 Tax=Notho... [more]
A0A5D6XWY5_9STRA3.540e-6873.51Iron-sulfur cluster assembly protein n=1 Tax=Pythi... [more]
G4ZR66_PHYSP4.240e-6876.00Iron-sulfur cluster assembly protein n=4 Tax=Phyto... [more]
D0MWH3_PHYIT4.680e-6873.68Iron-sulfur cluster assembly protein n=5 Tax=Phyto... [more]
K3XAL1_GLOUD6.620e-6875.16Iron-sulfur cluster assembly protein n=1 Tax=Globi... [more]
A0A3R7JQT3_9STRA1.160e-6776.32Iron-sulfur cluster assembly protein n=3 Tax=Phyto... [more]
A0A6U3XMM0_9STRA1.370e-6781.40Iron-sulfur cluster assembly protein n=1 Tax=Dicty... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6782contigL-elsbetiae_contig6782:7019..10553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.1
Seed ortholog evalue2.7e-72
Seed eggNOG ortholog2880.D7G1C2
Preferred nameISCU
KEGG koko:K22068
Hectar predicted targeting categoryother localisation
GOsGO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0005198,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008033,GO:0008150,GO:0008152,GO:0008198,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016226,GO:0016740,GO:0016782,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0031163,GO:0031974,GO:0032947,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0036455,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044571,GO:0046483,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097428,GO:0098771,GO:1901360,GO:1901564,GO:1990221
EggNOG free text desc.iron-sulfur transferase activity
EggNOG OGsCOG0822@1,KOG3361@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Ec32 ortholog descriptionISC system FeS cluster assembly, IscU scaffold
Ec32 orthologEc-00_005560.1
Exons5
Model size1257
Cds size507
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.2474303-UTR-L-elsbetiae_contig6782:7018..70711622816751.2474303-UTR-L-elsbetiae_contig6782:7018..7071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6782 7019..7071 +
1691683785.9894807-UTR-L-elsbetiae_contig6782:7018..70711691683785.9894807-UTR-L-elsbetiae_contig6782:7018..7071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6782 7019..7071 +
1622816751.260105-UTR-L-elsbetiae_contig6782:7529..75431622816751.260105-UTR-L-elsbetiae_contig6782:7529..7543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6782 7530..7543 +
1691683786.008107-UTR-L-elsbetiae_contig6782:7529..75431691683786.008107-UTR-L-elsbetiae_contig6782:7529..7543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6782 7530..7543 +
1622816751.3191838-UTR-L-elsbetiae_contig6782:9870..105531622816751.3191838-UTR-L-elsbetiae_contig6782:9870..10553Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6782 9871..10553 +
1691683786.0745802-UTR-L-elsbetiae_contig6782:9870..105531691683786.0745802-UTR-L-elsbetiae_contig6782:9870..10553Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6782 9871..10553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.2704647-CDS-L-elsbetiae_contig6782:7543..77231622816751.2704647-CDS-L-elsbetiae_contig6782:7543..7723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6782 7544..7723 +
1691683786.0255377-CDS-L-elsbetiae_contig6782:7543..77231691683786.0255377-CDS-L-elsbetiae_contig6782:7543..7723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6782 7544..7723 +
1622816751.280783-CDS-L-elsbetiae_contig6782:8356..84071622816751.280783-CDS-L-elsbetiae_contig6782:8356..8407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6782 8357..8407 +
1691683786.0410342-CDS-L-elsbetiae_contig6782:8356..84071691683786.0410342-CDS-L-elsbetiae_contig6782:8356..8407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6782 8357..8407 +
1622816751.291296-CDS-L-elsbetiae_contig6782:8892..90741622816751.291296-CDS-L-elsbetiae_contig6782:8892..9074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6782 8893..9074 +
1691683786.0535476-CDS-L-elsbetiae_contig6782:8892..90741691683786.0535476-CDS-L-elsbetiae_contig6782:8892..9074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6782 8893..9074 +
1622816751.3045359-CDS-L-elsbetiae_contig6782:9776..98701622816751.3045359-CDS-L-elsbetiae_contig6782:9776..9870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6782 9777..9870 +
1691683786.0637097-CDS-L-elsbetiae_contig6782:9776..98701691683786.0637097-CDS-L-elsbetiae_contig6782:9776..9870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6782 9777..9870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6782.15536.1prot_L-elsbetiae_contig6782.15536.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6782 7544..9870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6782.15536.1

>prot_L-elsbetiae_contig6782.15536.1 ID=prot_L-elsbetiae_contig6782.15536.1|Name=mRNA_L-elsbetiae_contig6782.15536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MNTMQNVARKALGGSLSAIRRSGAAPAACQRRSYHDNIVEHYENPRNVGS
LDKNNKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIAS
SSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIK
DLQDKGAVPKPAQHAEAA*
back to top

mRNA from alignment at L-elsbetiae_contig6782:7019..10553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6782.15536.1 ID=mRNA_L-elsbetiae_contig6782.15536.1|Name=mRNA_L-elsbetiae_contig6782.15536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3535bp|location=Sequence derived from alignment at L-elsbetiae_contig6782:7019..10553+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCCCTCAATTTCCATCCCGGGCACAACACAACGCGCTCCAGGCACAA
AAGGTGAGCGAAGTAACCGCAGGAGCATCGAACCATGGATGGAAATATCT
TGCCGGTTACGTCTTGTCGTAGGTTAAGCGTGTGGGCGAAAAAAGGCTGT
AAAATAACTTCCGCGAAAAGAGCTGGTTGCTCACATTTTGACGCAGGTTG
CAGCGTCAGAAGGTCTCTTCTGCCCCAAGGCGTCGCCGCCCGCCCGGGGA
CACTTAGCGCTGCACTCGACTGGAACGTTTCCTTTTTTACCTTAGGTGCC
TAACTTTCTCTCCTGCTGCATACATACGTGAGAGGTTTCACCGAAAAACA
TACCGCACTCCGGGGCAAAAATACACCGCCTCTGTAGTTATTGTATCGCC
AGACGAGCTGGCCATGCTGGCATGCACACCGCGACCGCCGAATTTTCCTC
CTTCGCCCTCTTTAACCCTCCATACCGCACCCCTTGATTCTACCCGTCCT
GTGTTCAGCAGACTTTTGAACAGCGATGAACACTATGCAGAACGTTGCAC
GCAAAGCTCTGGGGGGAAGTCTATCGGCCATCCGGCGATCAGGCGCAGCG
CCGGCCGCCTGTCAGAGGAGAAGCTACCACGACAACATTGTCGAGCACTA
CGAAAACCCTCGCAACGTCGGCTCGTTGGATAAGAATAACAAGTTTGTGG
GCACGGTGAGATATTATGTTGAAAGCTTGGACCGGTGTGATTCCCTTGGG
TCTATACTATCTCGCAGTAATTTAGTAATATTCGTGGTTGCTTGTAGTCT
CTAGATACAGCTGTTTCCGCGCGGACACAGGTTATCTTTTTGGGCCATAA
AAAGGATCAATACGGCTCTTCTGCCCTCCCCGAGGTGAAGTGCACACCTC
TCGCTTGCGGAAGGGCCCCGAGTCCGCCCGTGTGCAAGAGATTCTTGTGC
CTGGGCCACCAGAGAGTCGGTTGTGGCCACCAGACAGTCGGGTGTGGCCC
TCATTCCGCCTTGGTTATTCGCTCCTTAGTTGGCACTACTACCCCGTTTG
GACTCGCACGTACACTAGTCTACATCTTGTGAATGCTGGTGACGATAAGG
TGGCGTTGCATATCCACGGCCGCAGCAGCAGCAGTAGCAGTAGTAGTAGC
AAATATGGTGCACAGCAGCCTTACAGCTTCTTGGTGGTCTCGTAGACGAT
AGGTTACACTTTGTGGAGGGCTTCGGCACTAGAGTAGTTAATGTGTCAAG
ACAAAAAAGCGATTTCGCAAATGCTCGCACCAGATCTCAACCTGAATATC
CTGCTGCTCCCGTGCGCTTTTTAAACGATCGCGAACAGGGCTTGGTGGGG
GCTCCGGCTTGCGGCGATGTCATGAAGCTGCAGATCAAGGTGAGCCGCCG
TGTACAGAGAGAGAGACCAGTGACCCCTGAAGACTCGCACAGGGCAACGA
AAACATTATTGTAGACCTCAACAGGCAGTGAAGGACCGTTTAATGTACAT
GGGTACTTCGATAAAGATGAAACCCCGCTCACAGTATTTTGTAATGCACC
AGTTTTTGTTCACTGCTGTGTACGGCTTATAGACGAAGGTCTCTAGCAAT
CGGTGAGCCGGGCACTTAGAGTCGGCGGTTGGTAATCTCTTATTGGTCTC
TTTTTTTGCGCCGCTCCACGTCATGCACCGACCGTCGAATCTTACCATCG
AGTGTGTTCGGCCGATCTCACGGTACGATACACAGGTATGGTAGTGTTTT
CCGGGAACGGAGCGACTCGCTAGTTGTCGTGTGTTTGTGCGTTTTTGGCT
TGTGGTGGGCGCGGTCTATTACATATGTGGTTGGCTTTAACTTGGTATCC
TTATTTTTTGTCTGCTTTTCAAAGGTGGATGAGAACGGGGTCATCACGGA
GTCGAAGTTCAAGACCTTTGGGTGCGGGTCGGCGATCGCGTCGAGCAGCG
TGGCAACCGAGTGGCTCAAGGGGCGATCCGTTGACGAGAGCTTGAAGATC
AAGAACACTGACATCGCGGGGCACCTCAAGCTGCCGCCGGTTAAGCTCCA
CTGCAGGTGCGTACAACCCCTCCCTTTGTTGTAGCAAACAAGTTAGTCTA
CTGAGGCAGCATCTGTGTATATTATGAAAGGGCGAGGGACGGCAGAGGGC
CACAAGACCAACGTTCATGGCTCTCTTGGTGCGTTTTCGCCGTTTCAGTT
TGCTGAGCGGCTCATATGTCCTCTGCTGGACTCCTCAGGCTACCACTAGC
CGGGATGCCCTTCCGCTTTTTCCTGCACTATACTCAAAGTGACACACAAT
AAATGGCGACATGTTGTTGAGCCCGCTTTTTACCGCAAGGGTCCTCTCTG
TCAAGTCAGTGTGGATGGAGTTGTGTCGTGCACAAGTGTACTATATTCGA
TAGGAAGCTCGCCGATTACTGGCGTGTTTTTCAAGAGTTTTTTTCCCGCG
GAGCTTCAGGAGGCGCACCAATTTTTTCGAGATACCTGGCGGGACATGGT
CGCCTGTCTATTTGTTGCTACTTAGCAATGGCAGGTATCGCGGCATGCTG
GCATCCTTTTTATTTCGATGTACAGTTATTGACAGGTGTTGGCCTAACCA
GGTGATTCCCTGTGTCTGGCGAAAGCCTTGCTCTCAGTCTCTGTTGTATC
AAAAAATATATATTTTTCCCATCCCTGCCGCCTCGTCGTGACGTCTGTCC
TGCTGTCCCTCTACCGCTGTGCGCGTTGTCTGCGTCCTCTCTTCTCTCGT
TGTCACAGCATGCTGGCAGAGGACGCCATCAAGGCGGCAATCAAGGACCT
CCAGGACAAGGGCGCGGTGCCCAAGCCGGCGCAGCACGCGGAGGCGGCAT
GATCGGGATCGCGCGTTGTTCAAAGAGGAAGAGCCGTACCACAGAGGAAG
GGTTGGGGCAGAGGGAGGAACGGGGACGGACGCAAATCGTCTCCTGGGAT
ATATATATATATATATTTGTTTCCTTCTTGTCGATTCCCGCTCCATATTT
CAAGAGGCGTGTGCTGCCCCGCTAAATACCCGAGCGGAGTTGTTGCTCGG
AGGGCCCGCGAGAGCAGGATGCTCACAGGAGAGCACGTGGCGGATGCGAA
ACACATCTCTTGGCGGTGCTGGCCCGGCGAGGAGAATGGGACGAGGGCGG
GTGTGTGCGGGGGGGTCGTCTTGGCGGGGCTGGCTTGACGGCAGCTCTGG
CCGTGGGGCTGGGGAAGTTTTCCCGGCAGAGATGCTGCAGGGATCATTTC
ATAGGGCGAGTGGAGGTTGGGAGAGAGGGAGGGAAAGCACGACGAGGAAG
TCGGTCGGGAAAAAGGGAGCATGGAGAGGGAAGGCCCGGGAAACCGGCCG
GTGCCACTGTGGGGTTGCTACATAATATTGGCGTTTCTTCGAACCCCGCA
CCCGCGCGCCCCTCGGGCGGTAGGCGCGCCCCCGTCGGCAAGGCATGCGG
TCGAGACTGGCGGTTGCCATCCCCATCGCCGAAGCGATTTCCAATGCGTC
GTGCGTGTTTATTTCTCTCCGTGCAAAGAGGTGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6782:7019..10553+

>mRNA_L-elsbetiae_contig6782.15536.1 ID=mRNA_L-elsbetiae_contig6782.15536.1|Name=mRNA_L-elsbetiae_contig6782.15536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig6782:7019..10553+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACACTATGCAGAACGTTGCACGCAAAGCTCTGGGGGGAAGTCTATC
GGCCATCCGGCGATCAGGCGCAGCGCCGGCCGCCTGTCAGAGGAGAAGCT
ACCACGACAACATTGTCGAGCACTACGAAAACCCTCGCAACGTCGGCTCG
TTGGATAAGAATAACAAGTTTGTGGGCACGATGAACACTATGCAGAACGT
TGCACGCAAAGCTCTGGGGGGAAGTCTATCGGCCATCCGGCGATCAGGCG
CAGCGCCGGCCGCCTGTCAGAGGAGAAGCTACCACGACAACATTGTCGAG
CACTACGAAAACCCTCGCAACGTCGGCTCGTTGGATAAGAATAACAAGTT
TGTGGGCACGGGCTTGGTGGGGGCTCCGGCTTGCGGCGATGTCATGAAGC
TGCAGATCAAGGGCTTGGTGGGGGCTCCGGCTTGCGGCGATGTCATGAAG
CTGCAGATCAAGGTGGATGAGAACGGGGTCATCACGGAGTCGAAGTTCAA
GACCTTTGGGTGCGGGTCGGCGATCGCGTCGAGCAGCGTGGCAACCGAGT
GGCTCAAGGGGCGATCCGTTGACGAGAGCTTGAAGATCAAGAACACTGAC
ATCGCGGGGCACCTCAAGCTGCCGCCGGTTAAGCTCCACTGCAGGTGGAT
GAGAACGGGGTCATCACGGAGTCGAAGTTCAAGACCTTTGGGTGCGGGTC
GGCGATCGCGTCGAGCAGCGTGGCAACCGAGTGGCTCAAGGGGCGATCCG
TTGACGAGAGCTTGAAGATCAAGAACACTGACATCGCGGGGCACCTCAAG
CTGCCGCCGGTTAAGCTCCACTGCAGCATGCTGGCAGAGGACGCCATCAA
GGCGGCAATCAAGGACCTCCAGGACAAGGGCGCGGTGCCCAAGCCGGCGC
AGCACGCGGAGGCGGCATGACATGCTGGCAGAGGACGCCATCAAGGCGGC
AATCAAGGACCTCCAGGACAAGGGCGCGGTGCCCAAGCCGGCGCAGCACG
CGGAGGCGGCATGA
back to top