mRNA_L-elsbetiae_contig678.15533.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig678.15533.1 vs. uniprot
Match: D8LCR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR1_ECTSI) HSP 1 Score: 398 bits (1022), Expect = 4.150e-119 Identity = 285/522 (54.60%), Postives = 334/522 (63.98%), Query Frame = 1
Query: 1267 DGGWGEGK-QEQEVEVEWYEDSPNEMEELGWSQVWRRGDAMAVGGXXXXXX----GLDERSRARARK-----LIEAASAAEADGGG--LVGPKGLSELLRLEIKGAVTMDGVLVAVLRGRSLKRDAGFLGRLVVRVVEGIDAAHVSPLSDPDVLTLVVEELEGLVELVAAPSAPGA-RGAGWGRETRLAVELLTETLLEGMD-----RVAGSG---GGDAEEDASGGYSSMSFGNSKKXXXXXXXVKANEPKSAEGGSVGDGEG------SAWAAEAEAPVLWWWETDDAARLPWAVARLLGLLLRRLREPEHTRSILHSVLVRCAGGPARLLRFPLAFLEAFPGYFLPPRPSPTSAPSSPGHGSXXXXXXXXXXXGRRVLAPGLWSRAVTAAMFPAGXXXXXXXXXXXVGAA---------------VVSARFKLVCLG--QGGSARRVGGREEPA--ELTEEILRAIGALHLPQEQEGDETGGDGKGVCELCCGAGG---DGGACGGDDALAMSTGLSVV 2685
D GW EG+ Q++E EVEWYED+P +M LGWSQVWRRGD A XXXXXX GLD+ SR ARK L + A +A + G ++GPKGLS LLRLE+ GAV+M+GVLV+ LRGRSLKRD GFLGRL ++++ GIDAAH SPLSDP+VL+LVVEELEGL E++AAPS R GW RETRLA+ELL+ETLL+ MD R +G G GD E D GGYSSMSFG XXXXXXX AW AEAEA VLWWWETD+ AR+PWAVARLLGLLLRRL +P+ T+++LH +LVR GGPARL RFPLAFLEAFPG L P+ AP++ + G VLAPGLW RAV A +FP XXXXXXXXXXX VVSAR KLVC G + G R GG EE +L ++IL+AIG+LH G E + +G C LC GAGG GGACGGDDALAMS+GL V
Sbjct: 31 DDGWEEGEGQQEEEEVEWYEDTPGDMGRLGWSQVWRRGDVTAAAXXXXXXXXXXXGLDKGSRVLARKCRKLLLADTAGSAPSSESGDEILGPKGLSALLRLELTGAVSMEGVLVSALRGRSLKRDHGFLGRLALQLLSGIDAAHASPLSDPEVLSLVVEELEGLAEILAAPSTTEQLRVFGWARETRLALELLSETLLDWMDENQAKRSSGVGDAVNGDEENDDPGGYSSMSFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAWRAEAEATVLWWWETDEEARVPWAVARLLGLLLRRLDQPQRTQAVLHPILVRSLGGPARLRRFPLAFLEAFPGLLLRSSPTAAGAPANGRYWGGQEEDGAKVERGDGVLAPGLWRRAVAAVLFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSARLKLVCFGDVRRGQQREGGGPEEETADDLADKILQAIGSLHS---NPGAEAKAEEEGGCALCRGAGGGGYSGGACGGDDALAMSSGLVFV 549
BLAST of mRNA_L-elsbetiae_contig678.15533.1 vs. uniprot
Match: A0A6H5LB44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB44_9PHAE) HSP 1 Score: 382 bits (981), Expect = 1.130e-114 Identity = 441/932 (47.32%), Postives = 508/932 (54.51%), Query Frame = 1
Query: 157 LFPIMYKMKDLLTTLQPQCNQYR------LELEAVKAENQKLRRRLGLPPAPAXXXXXXXXXXXXXXXXVSARKXXXXXXXXXXXXXXXXXXXXXXXXXXXQAHTTKKKP--PSGGT----------GLGSGSIXXXXXXXXXIDTKGRRVAAAATAPTPPPRKDRSKGEKIRDWTAAVARNKRARSNGGTGEPAPDRGGXXXXXXXXXXXXXXXXXDEGCRSGSAELPGLETGPVEVGRAGKSSGGSXXXXXXXXXXXXXXXXXXXXXE--------------------TALKPTGVFAAAEFSFLDGGKEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNDRNGGAS---GDPIPRTSSMLARG-------------GFQAQGGGDPWSDGRSNGVDDGGWGEGK-QEQEVEVEWYEDSPNEMEELGWSQVWRRGDAMAVGGXXXXXXGLDERSRARARKLIEAASAAEA----DGGGLVGPKGLSELLRLEIKGAVTMDGVLVAVLRGRSLKRDAGFLGRLVVRVVEGIDAAHVSPLSDPDVLTLVVEELEGLVELVAAPSAPGA-RGAGWGRETRLAVELLTETLLEGMD-----RVAGSG---GGDAEEDASGGYSSMSFGNSKKXXXXXXXVKANEPKSAEG-----GSVGDGEGS-AWAAEAEAPVLWWWETDDAARLPWAVARLLGLLLRRLREPEHTRSILHSVLVRCAGGPARLLRFPLAFLEAFPGYFLPPRPSPTSAPSSPGHGSXXXXXXXXXXXGRRVLAPGLWSRAVTAAMFPAGXXXXXXXXXXXVGAAV-----------VSARFKLVCLG--QGGSARRVGGREEPA--ELTEEILRAIGALHLPQEQEGDETGGDGKGVCELCCGAGGDGGACGGDDALAMSTGLSVV 2685
L P+MYKMKD L L PQCNQY+ L V A++++ P APA + + K+K PS G GLGS + XXXX A T P RKDRSKGEK+RDWTAAVAR KR R GG G+ D G XXXXXXXXXX LE G XXXXXXXXXXXXXXXXXXXXX ++PTGVFAAA FSFLD G + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P+P+TSSMLARG G + +GGG+ G D GW EG+ Q++E EVEWYED+P +M LGWSQ RKL+ A +A A G ++GPKGLS LLRLE+ GAV+M+GVLV+ LRGRSLKRD GFLGRL ++++ GIDAAH SPLSDP+VL+LVVEELEGL E++AAPS RG GW RETRLA+ELL+ETLL MD R +G G GD E D GGYSSMSFGNSKKXXXXXXX G VG+ EG AW AEAEA VLWWWETD+ AR+PWAVARLLGLLLRRL + + T+++LH +LVR GGPARL RFPLAFLEAFPG L + A ++ H G VLAPGLW RAV A +FP XXXXXXXXXXX VSAR KL+ G + G R GG EE +L ++IL+AIG+LH G +C CGGDDALAMS+GL +V
Sbjct: 40 LLPMMYKMKDKLAELHPQCNQYKGCCEDIPTLVKVIAQSRE-------PGAPASARDAPLCKNAAWANRTLHGVDEFVCACRAGAPSKKGSKGAAVVAARSEVVSDKRKALAPSSGXXXXAALTASLGLGSDAAGSGSGXXXXXXXXXXXXXXXXAAVTAPARKDRSKGEKVRDWTAAVARQKRER--GGRGDV--DENGKGAAGRGXXXXXXXXXXXXXXXXXXXXXXXLEKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAEAPAVVQPTGVFAAAAFSFLDEGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPVPQTSSMLARGFRPGGESAASNEDGVEEEGGGE--------GDFDDGWEEGEGQQEEEEVEWYEDTPGDMGRLGWSQC---------------------------RKLLLADTAGSAPSLESGDEILGPKGLSALLRLELTGAVSMEGVLVSALRGRSLKRDHGFLGRLALQLLSGIDAAHASPLSDPEVLSLVVEELEGLAEILAAPSTTAQLRGYGWARETRLALELLSETLLGWMDEHQAKRYSGVGDTENGDDENDDPGGYSSMSFGNSKKXXXXXXXXXXXXXXXXXXXXXXXGGVGEEEGGDAWRAEAEATVLWWWETDEEARVPWAVARLLGLLLRRLDQLQRTQAVLHPILVRSLGGPARLRRFPLAFLEAFPGLLLRSPLTAAGALANGRHREGQEEDGAKVDQGDGVLAPGLWRRAVAAVLFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSARLKLMWFGDVRQGQQREGGGPEEETADDLADKILQAIGSLHSSPRAAAKAGEEGGCALCRXXXXXXXXXXXCGGDDALAMSSGLVLV 925 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig678.15533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig678.15533.1 >prot_L-elsbetiae_contig678.15533.1 ID=prot_L-elsbetiae_contig678.15533.1|Name=mRNA_L-elsbetiae_contig678.15533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=895bp GTQGGGCTREGSMSSKAKRRGGKDGGGDGASSRDKKKKKKGEKGEKCKKCback to top mRNA from alignment at L-elsbetiae_contig678:22154..33907+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig678.15533.1 ID=mRNA_L-elsbetiae_contig678.15533.1|Name=mRNA_L-elsbetiae_contig678.15533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11754bp|location=Sequence derived from alignment at L-elsbetiae_contig678:22154..33907+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig678:22154..33907+ >mRNA_L-elsbetiae_contig678.15533.1 ID=mRNA_L-elsbetiae_contig678.15533.1|Name=mRNA_L-elsbetiae_contig678.15533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5370bp|location=Sequence derived from alignment at L-elsbetiae_contig678:22154..33907+ (Laminarionema elsbetiae ELsaHSoW15)back to top |