mRNA_L-elsbetiae_contig678.15532.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig678.15532.1 vs. uniprot
Match: D8LCR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR0_ECTSI) HSP 1 Score: 912 bits (2356), Expect = 0.000e+0 Identity = 637/1010 (63.07%), Postives = 714/1010 (70.69%), Query Frame = 3
Query: 222 MVDHEKPGAVGSLSRQLQAISGNGWTNVQTPVRQGFEAVEATAQGLAEQLAASREDARRLEARLVGMEDMLSRRLDSNARATREELDVLRSALDSVPRLVDVQTTSDEACRGLELEMARKMAALEQSISEVREEGRKAVEAVRQAVATKAGLSDLEAFCPRGETATRTDLQDLEGRVARKAGAEAVDTSLATKVSWQDFERLLREKADSSALSELEANCPTVAALERVELGLARAVGMEEVRAFVETQTGDVQASFPALERLLAARAREEREAAERSPASPVSRGELRGLVQASLRDLRDDGDNGG-----LSSPAASATQVQATVSAAREGILRTVEALLSRARSAHREELLTQDKRLRLELDESVGRVRARAEGLGKSLEQAKGELVSLLNAKAYKADVSLLMQGKADSKGLDSVAALVRSKVDESDYRATLARTLHSLTALSGEVGGLRGDLRLDVDRLSSRLLAKADSDDLQAMKNALSDTVAAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLDQPGRGGTASVAAFGAGAGEEISSPRRARHRGXXXXXXXXXXXXXXXXXXEDPLPSAALPQEGAGPMYYGSRAGREGRAAAVAPT--SRGLSREEARLLIRAELKRAGISEKITREEASVQAEECASRALSSASRAAEAMDLRVRTISDRLETATVAVSQPHVERLFAAQANLELRIARSLSLGRWLWRGINFSELWAAA---ESGDGLGPAGVSGTGRGGTFGLVGPPESRGELAHGRGK-------------GVWVPWETEAANASPECLKWTPGDTSIIAVVPGLYLVSCGFFCQLPFVATVREGTTCGAQCVNPYRPAAYVCLNGDPVSSISSAEQLVFPTRQG----AALSPGAVTPGKEEGDKLRSISTR-RYNHPAGEVLATSAREYLALPAGGAISVKLEICSRGDHHDELPSRSESTSDGTGDGKVKISAVTV--------DGAEGGGHGDGWSGEPGGG--LDMMPRPQGFLEVHKL 3137
M+D EK AVG+LSRQLQA+SG+GWTNVQTPVRQGFEAVE TA GLA+QLAASR + RRLEARLVGMEDMLSRR+DS+AR+TREE+DVLRSALD VPRL D+Q+T+ EACR LE E+ ++ LE S++EVREE RK VEA RQA A KAGLSDLEA ATRTDLQDLE R+AR A EA+D LATKVSW DFERLLR+KAD+SALSEL+ANC T AALERVE+GL RA GMEEVRAFVE QTGDVQA PALERLL ARAREEREAAERSPASPV+RGEL GLV+A LR LRD D GG S SA+QVQA VSA RE LRTVEA L+RAR A +EELL+Q KRLRLELDESV RVRARAEGLGK L+QAK ELVSLLNAKAYKADVSLL+QGKADSK L S+AALV++KVD SD+R T ART+HSLTALSGEV GLRG+LRLDV+RLSSRLLAKADSDDL A+K TV AA XXXXXXXXXXXXXXXXXXXX P A G SS R R+ XXXXXXXXXXXXXXXXX PS + Q G + YGS G+E R A P+ GLSREEARLLIRAELKRAGIS+KITREEASVQAEECA+RAL+SA+ A+ +D R+ I+ RL+ +TVAVSQPHVERLFAAQ+NLELR+ARSLSLGRWLWRG+NFS +AAA +G+ +G G TG GG G P G G G G+WVPWE EAANASPE LKWTPG S+ AVVPGLYL+SCGFF Q+PFVAT R P+R A V LNGDPV S SS + G A AV +G + TR RY HPAGEVLA+SAREYLA PAGG +SVK EI G+ D P RS G G+V V +G GG G SGEP GG L+ PRPQGFLE+ KL
Sbjct: 1 MMDSEKLPAVGALSRQLQALSGSGWTNVQTPVRQGFEAVETTAHGLADQLAASRSELRRLEARLVGMEDMLSRRMDSHARSTREEVDVLRSALDRVPRLGDLQSTASEACRTLESEVTKRTRELELSVAEVREESRKGVEAARQAAAGKAGLSDLEA-------ATRTDLQDLENRLARMADREALDGDLATKVSWVDFERLLRDKADASALSELDANCATSAALERVEIGLTRAAGMEEVRAFVEKQTGDVQAMSPALERLLTARAREEREAAERSPASPVTRGELPGLVRACLRGLRDGRDGGGGEDDGFSPSGISASQVQAAVSAGRESTLRTVEAQLARARGAQQEELLSQVKRLRLELDESVSRVRARAEGLGKGLDQAKEELVSLLNAKAYKADVSLLLQGKADSKDLHSLAALVQTKVDGSDHRETSARTVHSLTALSGEVCGLRGELRLDVERLSSRLLAKADSDDLIAVKK----TVTGAAXXXXXXXXXXXXXXXXXXXXXGGASPDLMASTSSPP-------PANLG-----NASSLLRPRNGDXXXXXXXXXXXXXXXXXGGGDHPSTSHSQGAVGAVQYGS--GKE-RGADSLPSRGGGGLSREEARLLIRAELKRAGISDKITREEASVQAEECAARALASATTTADGLDRRISNINHRLQRSTVAVSQPHVERLFAAQSNLELRVARSLSLGRWLWRGVNFSAAYAAAVAAATGNSVGNNGAGITGDGGGLSSAGIPLPGGSQVDGAGXXXXXXXXXXXXXXGIWVPWEAEAANASPERLKWTPGCASVTAVVPGLYLLSCGFFSQIPFVATPRPNAA-------PHRFYAQVYLNGDPVYSFSSRRREPLAAASGEHDDAHKPVSAVARPPADGKEAYGDPTRCRYKHPAGEVLASSAREYLACPAGGVVSVKFEIFV-GEISDGRP-RSGVLG---GHGRVVRDRVVAAGIGEAPKEGPHGGACCHGRSGEPAGGGCLEDFPRPQGFLEIQKL 972
BLAST of mRNA_L-elsbetiae_contig678.15532.1 vs. uniprot
Match: A0A6H5KUP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP0_9PHAE) HSP 1 Score: 796 bits (2057), Expect = 6.200e-272 Identity = 588/1049 (56.05%), Postives = 670/1049 (63.87%), Query Frame = 3
Query: 222 MVDHEKPGAVGSLSRQLQAISGNGWTNVQTPVRQGFEAVEATAQGLAEQLAASREDARRLEARLVGMEDMLSRRLDSNARATREELDVLRSALDSVPRLVDVQTTSDEACRGLELEMARKMAALEQSISEVREEGRKAVEAVRQAVATKAGLSDLEAFCPRGETATRTDLQDLEGRVARKAGAEAVDTSLATKV------SWQDFERLLREKADSSALSELEANCPTVAALERVELGLARAVGMEEVRAFVETQTGDVQASFPALERLLAARAREEREAAERSPASPVSRGELRGLVQASLRDLRDD-----GDNGGLSSPAASATQVQATVSAAREGILRTVEALLSRARSAHREELLTQDKRLRLELDESVGRVRARAEGLGKSLEQAKGELVSLLNAKAYKADVSLLMQGKADSKGLDSVAALVRSKVDESDYRATLARTLHSLTALSGEVGGLRGDLRLDVDRLSSRLLAKADSDDLQAMKNALSDTVAAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLDQPGRGGTASVAAFGAGAGEEISSPRRARHRGXXXXXXXXXXXXXXXXXXEDPLPSAALPQEGAGPMYYGSRAGREGRAAAVAPTSRGLSREEARLLIRAELKRAGISEKITREEASVQAEECASRALSSASRAAEAMDLRVRTISDRLETATVAVSQPHVERLFAAQANLELRIARSLSLGRWLWRGINFSELWAAAESGDGLGPAGVSGTGRGGTFG------------LVGPPESRGELAHGRGK-GVWVPWETEAANASPECLK--------------------WTPGDTSIIAVVPGLYLVSCGFFCQLPFVATV--------------REGTTCGAQCVNP-----------YRPAAYVCLNGDPVSSISSA--EQLVFPTRQGAALSP--GAVTPGKEEGDKLRSISTRRYNHPAGEVLATSAREYLALPAGGAISVKLEICSRGDHHDELPSRSESTSDGTGDGKVKISAVTVDGAEGGGHGD--GWSGEP--GGGLDMMPRPQGFLEVHKL 3137
M+ +K AVG+LSRQLQA+SG+GWTNVQTPVRQGFEAVEATA GLA+QLAASR + RRLEARLVGMEDMLS+R+D + R+TREE+DVLRSALD VPRL DVQ R LE E+ ++ LE S++EVREE RK VEA RQA KAGL DLEA+CPRGE ATRTD+QDLE R+ARKA EA+D LATKV SW DFERLLR+KAD+SALSEL+ANC T AALERVE+GLARA GMEEVRAFVE QTGD+QA PALERLLAARAREEREA ERSPASPV+RGEL GLV+A LR LRD G++ GL SA+QVQA VSA RE KRLRLELDESVGRVRARAEG+GK L+QAK ELVSLLNAKAYKADVSLL+QGKADS L +AALV++KV+ESD+R + ART HSLTALSGEV GLRG+LRLDV+RLSSRLLAKADSDDL A+K TVA AA XXXXXXXXXXXXXXXXXXX L P A G SS R+R+ XXXXXXXXXXXXXXXXX +AA P G G GLSREE RLLIRAELKRAGIS+KITREEASV AE+CA+RAL+SA+ + +D R+ I+ RL+ +TVAVSQPHVERLFAAQ+NLELR+ARSLSLGRWLWRG+NFS +AA L G G G+WVPWE EAANASPE LK WTPG S+ AVVPGLYL+SCGFF Q+PFVATV R C + +R A + LNGDPV S SS E LV + + A P A P + + + R HPAGEVLA+SAREYLA PAGG +SVK EI G+ PS G G ++A + + G HG G SGEP GG + PRPQGFLE+ KL
Sbjct: 1 MMASDKLPAVGALSRQLQALSGSGWTNVQTPVRQGFEAVEATAHGLADQLAASRSELRRLEARLVGMEDMLSQRMDGHVRSTREEVDVLRSALDRVPRLGDVQGRR----RTLESEVTKRTRELELSVAEVREESRKGVEAARQAATGKAGLPDLEAYCPRGEAATRTDVQDLENRLARKADREALDGDLATKVQGNAPVSWVDFERLLRDKADASALSELDANCATSAALERVEIGLARAAGMEEVRAFVEKQTGDIQAMSPALERLLAARAREEREAVERSPASPVTRGELPGLVRACLRGLRDGDGGGGGEDDGLFPSGISASQVQAAVSAGREV------------------------KRLRLELDESVGRVRARAEGIGKGLDQAKEELVSLLNAKAYKADVSLLLQGKADSGDLSRLAALVQTKVNESDHRESAARTAHSLTALSGEVCGLRGELRLDVERLSSRLLAKADSDDLTAVKK----TVAGAAAXXXXXXXXXXXXXXXXXXXAGGSTSDLTPSMLSPP-------PANLG-----NASSLLRSRNGDLXXXXXXXXXXXXXXXXXGRERGAAAPPSRGGG----------------------GLSREETRLLIRAELKRAGISDKITREEASVLAEDCAARALASATTTTDGLDRRISNINHRLQRSTVAVSQPHVERLFAAQSNLELRVARSLSLGRWLWRGVNFSAAYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILLCGGSRVDGXXXXXXXXXGIWVPWEAEAANASPERLKVGPTHDRFRTCQSKYAEECEWTPGCASVTAVVPGLYLLSCGFFSQIPFVATVFHPYLLHVTPHNTTRTFVDCSRSAPHSVHLGPVPTPFLHRFCAQIYLNGDPVYSFSSRRREPLVSASGENDAHKPVSAAARPSADSKEACGDPTRCRSKHPAGEVLASSAREYLACPAGGVVSVKFEILV-GEISGGRPSSGVLGGHGRLVGDRIVAAGIGEAPKEGPHGSYSGKSGEPAEGGCREDFPRPQGFLEIQKL 982
BLAST of mRNA_L-elsbetiae_contig678.15532.1 vs. uniprot
Match: A0A835YJ30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ30_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.650e-16 Identity = 134/535 (25.05%), Postives = 203/535 (37.94%), Query Frame = 3
Query: 282 SGNGWTNVQTPVRQGFEAVEATAQGLAEQLAASREDARRLEARLVGMEDMLSRRLDSNARATREELDVLRSALDSVPRLVDVQTTSDEA--------CRGLELEMARKMAALEQSISEVREEGRKAVEAVRQAVATKAGLSDLEAFCPRGETATRTDLQDLEGRVARKAGAEAVDTSLATKVSWQDFERLLREKADSSALSELEANCPTVAALERVELGLARAVGMEEVRAFVETQTGD--------------------------------------VQASFPALERLLAARAREEREAAERSPASPVSRGELRGLVQASLRDLRDDGDNGGLSSPAASATQVQATVSAAREGILRTVEALLSRARSAHREELLTQDKRLRLELDESVGRVRARAEGLGKSLEQAKGELVSLLNAKAYKADVSLLM------------------------QGKADSKGLDSVAALVRSKVDESDYRATLARTLHSLTALSGEVGGLRGDLRLDVDRLSSRLLAKADSDDLQAMKNALSDTVAAAA 1676
+G GW N+QTPVR FEA + + LA +R+ + LE L M ++ +LD +A A R+ DS+ + QT + A + ++ ALE + A++AVR VA +A L+DL+ + PR E ATR DL D+E ++ + +V+W + LL +KAD+SAL L + AA ELG A ++A ++A P L A RE+ V+ +L + A LR E+ +S+ R +GL +SLE AK ELV +LN KAY++DV+ + KAD L+ VAA ++V ++ +R S+T LS +V G R DLR +++RL RL KAD+++L A++ L AAAA
Sbjct: 22 AGAGWKNIQTPVRSAFEAAAEVMRQQSLALAETRQTVKSLERTLKSMRTEVAAKLDKHASAAAA---ANRALADSLRHSIAAQTEARVADAXXXXXXXXXXXXDAQQRARALEATGXXXXXXXXXALQAVRADVAGRATLADLDGYIPRTEAATRQDLADVEAQLLSRXXXXXXXXXXXXRVAWAELPPLLADKADASALDALRRDAQLSAA---AELGAAVTPLRAALKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAEMPMLAXXXXXEAL--RESXXXXXXXXVTPAQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAA----------------------------------LRAEVCDSLARWEGCTDGLRRSLEAAKAELVEVLNKKAYRSDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKADVAALERVAADAAARVGAAELAELSSRVRASMTQLSADVSGARVDLRSEMERLGQRLRRKADAEELAALRKELLPLSAAAA 514
BLAST of mRNA_L-elsbetiae_contig678.15532.1 vs. uniprot
Match: A0A7S3UTP2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTP2_HETAK) HSP 1 Score: 72.4 bits (176), Expect = 3.440e-11 Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 3
Query: 1290 ELDESVGRVRARAEGLGKSLEQAKGELVSLLNAKAYKADVSLLMQGKADSKGLDSVAALVRSKVDESDYRATLARTLHSLTALSGEVGGLRGDLRLDVDRLSSRLLAKA 1616
+LD R E L LE AK +LV ++N KAYK+DV +Q KAD L+ KVD+ +Y ++R L L+AL+ +V ++G+LRLDV++L ++ A+A
Sbjct: 29 QLDRHAARCETAIETLRSQLEAAKRDLVQVINKKAYKSDVGKSLQVKADRSALEG-------KVDKLEYHEQISRCLQQLSALAADVAWVKGELRLDVEKLRDQVTAEA 130
BLAST of mRNA_L-elsbetiae_contig678.15532.1 vs. uniprot
Match: A0A8J8P4K0_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8P4K0_HALGN) HSP 1 Score: 62.0 bits (149), Expect = 6.100e-6 Identity = 45/156 (28.85%), Postives = 67/156 (42.95%), Query Frame = 3
Query: 2493 VPWETEAANASPECLKWTPGDTSIIAVVPGLYLVSCGFFCQLPFVATVREGTTCGAQCVNPYRPAAYVCLNGDPVSSISSAEQLVFPTRQGAALSPGAVTPGKEEGDKLRSISTRRYNHPAGEVLATSAREYLALPAGGAISVKLEICSRGDHHDE 2960
VPWE +A N P+ W TSIIAV PGLY +S GF+ + +P + LNG+ + S++ ++ T KE +K+ T + H AG V + +Y+ALPA +L I +G+ H E
Sbjct: 700 VPWEVQALNTCPDNFLWEKSKTSIIAVAPGLYELSFGFYSKK--------------------QPIVQIHLNGEALMSVNKSQ----------------FTSEKENSNKI----TTQGKHSAGNVTGLTLLDYIALPA----RARLSITFQGETHGE 811
BLAST of mRNA_L-elsbetiae_contig678.15532.1 vs. uniprot
Match: A0A078AG74_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AG74_STYLE) HSP 1 Score: 61.6 bits (148), Expect = 7.970e-6 Identity = 44/152 (28.95%), Postives = 65/152 (42.76%), Query Frame = 3
Query: 2493 VPWETEAANASPECLKWTPGDTSIIAVVPGLYLVSCGFFCQLPFVATVREGTTCGAQCVNPYRPAAYVCLNGDPVSSISSAEQLVFPTRQGAALSPGAVTPGKEEGDKLRSISTRRYNHPAGEVLATSAREYLALPAGGAISVKLEICSRGD 2948
VPWE +A N P+ W TSI+AV PGLY VS GF+ + +P + LNG+P+ S+S + Q A + + + K IS H AG V + +++ALPA +S+ S G+
Sbjct: 681 VPWEVQALNTCPDNFLWEKSKTSIVAVAPGLYEVSFGFYSKK--------------------QPTVQIHLNGEPLMSVSKSSQ--------AQIRCNIIFRFVNDHGKENRISNVG-KHSAGNVTGLTLLDFIALPARARLSLTFTCDSPGE 803 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig678.15532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig678.15532.1 >prot_L-elsbetiae_contig678.15532.1 ID=prot_L-elsbetiae_contig678.15532.1|Name=mRNA_L-elsbetiae_contig678.15532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=973bp MVDHEKPGAVGSLSRQLQAISGNGWTNVQTPVRQGFEAVEATAQGLAEQLback to top mRNA from alignment at L-elsbetiae_contig678:9403..22001- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig678.15532.1 ID=mRNA_L-elsbetiae_contig678.15532.1|Name=mRNA_L-elsbetiae_contig678.15532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12599bp|location=Sequence derived from alignment at L-elsbetiae_contig678:9403..22001- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig678:9403..22001- >mRNA_L-elsbetiae_contig678.15532.1 ID=mRNA_L-elsbetiae_contig678.15532.1|Name=mRNA_L-elsbetiae_contig678.15532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5838bp|location=Sequence derived from alignment at L-elsbetiae_contig678:9403..22001- (Laminarionema elsbetiae ELsaHSoW15)back to top |