mRNA_L-elsbetiae_contig6776.15530.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Match: A0A6H5JLV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLV4_9PHAE) HSP 1 Score: 198 bits (504), Expect = 2.800e-56 Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 2 Query: 179 RVFYLDDFKDVLAGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYYRFPTEFSWYFWDESLRQYVPKNLAADATPRSPFFMREWPNAWEDIDQDVF 487 RVFYLDDF+DVL GIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYYRFPTEFSWYFWDES + Y+PK+L DA PRSPFFMREWP AWED+DQDV+ Sbjct: 476 RVFYLDDFQDVLDGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYYRFPTEFSWYFWDESAKDYIPKSLVEDAVPRSPFFMREWPVAWEDLDQDVW 578
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Match: A0A7S0GCV4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCV4_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.090e-19 Identity = 50/110 (45.45%), Postives = 66/110 (60.00%), Query Frame = 2 Query: 188 YLDDFKDVLAGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYYRFPTEF---------SWYFW--DESLRQYVPKNLAADATPRSPFFMREWPNAWEDIDQDV 484 YLDDF +L GI+ +YY M+D ++AS+GR F GTW STF+GYI R+RGYY + SWYF+ D K++ R P +MRE+P AW DID+DV Sbjct: 104 YLDDFAHLLEGINTNYYGMLDQLIASKGRVFFGTWFSTFSGYINRMRGYYTTKKKIGEYQDGLMTSWYFYPPDRKFEMVQYKSV------RLPIYMREFPTAWRDIDKDV 207
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Match: A0A7S2DLB8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLB8_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 3.450e-18 Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 2 Query: 179 RVFYLDDFKDVLAGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYYRFPTEFSWYFWDESLRQYVPKN----LAADATPRSPFFMREWPNAWEDID 475 R+ YL D+ + L GI P++Y MI+ IVA+QGRTF GT+ STFTGYITRLRGYY F ++YF PK+ + P +P++ REWP AW+ ID Sbjct: 407 RLRYLGDYMEHLDGISPNFYGMIEQIVAAQGRTFTGTFFSTFTGYITRLRGYYGFEDNKTFYF--------APKDKILAFHSQTWPTNPYYTREWPLAWDMID 501
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Match: A0A7S1VYQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VYQ0_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.800e-17 Identity = 46/107 (42.99%), Postives = 64/107 (59.81%), Query Frame = 2 Query: 182 VFYLDDFKDVLAGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYY---------RFPTEFSWYFWDESLRQYVPKNLAADATPRSPFFMREWPNAWEDID 475 +++LDDF D ID +YY M+D IVAS+GR F GTW ST +GY+ R+RGYY + T S+YF + + + K + PF+MRE+P AW+DID Sbjct: 161 IYFLDDFADEYTDIDKTYYGMLDQIVASKGRVFYGTWWSTLSGYVNRMRGYYITKHKLDGYKDGTMQSYYFTPQERKMVMVKYHPV----KDPFYMREFPTAWKDID 263
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Match: A0A7S4N1R2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1R2_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 7.680e-17 Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 2 Query: 182 VFYLDDFKDVLAGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGY---------YRFPTEFSWYFWDES----LRQYVPKNLAADATPRSPFFMREWPNAWEDIDQDV 484 V +LDDFKD+LAGI+ +YY M+D +VAS+GR F GTW ST +GYI R+RGY Y T S+YF + +RQY + R P +MRE+P +W DID+ + Sbjct: 523 VLFLDDFKDLLAGINTNYYGMLDQLVASKGRVFYGTWWSTLSGYINRMRGYHSAKHHLEGYEEGTLQSYYFIPDDRKLEMRQY--------RSVRLPIYMREFPTSWRDIDRGI 628
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Match: A0A7S3PYB4_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYB4_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 4.910e-16 Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 2 Query: 182 VFYLDDFKDVLAGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYYRFPTEFSWYFWDESLRQYVPKNLAA--DATPRS-PFFMREWPNAWEDIDQDV 484 V++LDDFK + G++ +YY M+D ++AS+GRTF+GT+ STFTGYI R+RGY+ + + + Y + A + TP S PF+ RE+P AW DID+ + Sbjct: 600 VYFLDDFKHLFKGLNTNYYGMLDQLIASRGRTFVGTYYSTFTGYINRMRGYHADQDKLEGHELGKIQSYYFTNSQTAMINFTPLSRPFWAREYPVAWRDIDKGI 703
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Match: A0A6V2HVI9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2HVI9_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 5.130e-16 Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 2 Query: 182 VFYLDDFKDVLAGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYYRFPTEF---------SWYFWDES----LRQYVPKNLAADATPRSPFFMREWPNAWEDIDQDV 484 V++LDDFK +L GI+ +YY MID ++AS+GR F+GT+ STFTG+I R+RGYY + S+YF +R YVP A F+ RE+P +W DID+ V Sbjct: 250 VYFLDDFKHLLGGINTNYYGMIDQLIASKGRVFVGTYHSTFTGFINRMRGYYAEKHKLQGYEEGIIDSYYFAPIGQKFVMRDYVPVKQA--------FYAREFPASWRDIDKGV 355
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Match: K0TH22_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TH22_THAOC) HSP 1 Score: 87.4 bits (215), Expect = 5.280e-16 Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 2 Query: 182 VFYLDDFKDVLAGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYY---------RFPTEFSWYFWD----ESLRQYVPKNLAADATPRSPFFMREWPNAWEDIDQDV 484 V +LDDFK +L GI+ +YY M+D +VAS+GR F GTW ST +GY+ R+RGYY T S+YF+ ++QY+P + P +MRE+P +W DID+ + Sbjct: 372 VAFLDDFKHLLKGINTNYYGMLDQLVASKGRVFYGTWWSTLSGYVNRMRGYYITKHKLEGHEDGTMESYYFFPLDRANQMKQYMPV--------KKPIYMREFPTSWRDIDRGI 477
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Match: A0A7S3DMJ3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DMJ3_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 5.840e-16 Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 2 Query: 161 NLMMASRVFYLDDFKDV--LAGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYYRFPTEFSWYFWDESLRQYVPKNLAADATP--RSPFFMREWPNAWEDIDQDVF 487 +L + V +LDD+ D+ L+G+DP+Y MIDTIVAS+ R F GTW STF+GYI RLRGY+ + SWY ++PK A + + EWP+ W ID D F Sbjct: 430 DLAVHYEVRFLDDYWDLAGLSGLDPNYMGMIDTIVASRARAFAGTWFSTFSGYINRLRGYHGMSMKDSWY-------SFLPKKTAVHEWEIVKHSAYAFEWPDGWVGIDSDTF 535
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Match: A0A7S2KUL9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KUL9_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.300e-15 Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 2 Query: 188 YLDDFKDV--LAGIDPSYYLMIDTIVASQGRTFIGTWRSTFTGYITRLRGYYRFPTEFSWYFWDESLRQYVPKNLAADATPRSPFFMREWPNAWEDIDQDVFV*S 496 +L+DFK++ L IDP+ + MIDT++AS+GR F+GTW STFTGYI R+RGY S+Y + R+Y N P + REWP +W ID D+ V S Sbjct: 98 FLNDFKEIANLEEIDPNLFGMIDTVIASRGRLFVGTWFSTFTGYINRMRGYNGMSGTTSYYSTPD--RKY---NTHKWVDPSNILIAREWPTSWVGIDGDIAVRS 197 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6776.15530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6776.15530.1 >prot_L-elsbetiae_contig6776.15530.1 ID=prot_L-elsbetiae_contig6776.15530.1|Name=mRNA_L-elsbetiae_contig6776.15530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp MCMCMPVATYCPWQRSDVGRHTRRRPPPTPTPTPAPTTNQNLMMASRVFYback to top mRNA from alignment at L-elsbetiae_contig6776:7336..10071- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6776.15530.1 ID=mRNA_L-elsbetiae_contig6776.15530.1|Name=mRNA_L-elsbetiae_contig6776.15530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2736bp|location=Sequence derived from alignment at L-elsbetiae_contig6776:7336..10071- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6776:7336..10071- >mRNA_L-elsbetiae_contig6776.15530.1 ID=mRNA_L-elsbetiae_contig6776.15530.1|Name=mRNA_L-elsbetiae_contig6776.15530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig6776:7336..10071- (Laminarionema elsbetiae ELsaHSoW15)back to top |