mRNA_L-elsbetiae_contig6771.15529.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6771.15529.1
Unique NamemRNA_L-elsbetiae_contig6771.15529.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6771.15529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6771contigL-elsbetiae_contig6771:9927..10653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size727
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6771.15529.1prot_L-elsbetiae_contig6771.15529.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6771 10227..10598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.405133-UTR-L-elsbetiae_contig6771:9926..102261622816750.405133-UTR-L-elsbetiae_contig6771:9926..10226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6771 9927..10226 +
1691683785.3259633-UTR-L-elsbetiae_contig6771:9926..102261691683785.3259633-UTR-L-elsbetiae_contig6771:9926..10226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6771 9927..10226 +
1622816750.4290092-UTR-L-elsbetiae_contig6771:10598..106531622816750.4290092-UTR-L-elsbetiae_contig6771:10598..10653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6771 10599..10653 +
1691683785.3492513-UTR-L-elsbetiae_contig6771:10598..106531691683785.3492513-UTR-L-elsbetiae_contig6771:10598..10653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6771 10599..10653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.418272-CDS-L-elsbetiae_contig6771:10226..105981622816750.418272-CDS-L-elsbetiae_contig6771:10226..10598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6771 10227..10598 +
1691683785.3385649-CDS-L-elsbetiae_contig6771:10226..105981691683785.3385649-CDS-L-elsbetiae_contig6771:10226..10598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6771 10227..10598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6771.15529.1

>prot_L-elsbetiae_contig6771.15529.1 ID=prot_L-elsbetiae_contig6771.15529.1|Name=mRNA_L-elsbetiae_contig6771.15529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MATANQLMVRTTSRFRFTHVRQDKAGWRLMVPTTSRFRFTHVRQDKAGWR
CRVAREGVDLKCLPSDPCLWPENFPENLKNSNILPTNTFKRFLWEKNHCQ
NVANFLKRGKSCYFAGLLSGIFP*
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mRNA from alignment at L-elsbetiae_contig6771:9927..10653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6771.15529.1 ID=mRNA_L-elsbetiae_contig6771.15529.1|Name=mRNA_L-elsbetiae_contig6771.15529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=727bp|location=Sequence derived from alignment at L-elsbetiae_contig6771:9927..10653+ (Laminarionema elsbetiae ELsaHSoW15)
GGCACCGTTGTCCACTCCGTCTTCCCCCCACACGTCAACGTTGTACATGC
AAGCTCCCTCCGTTTCCACGGCAGGCACTCCCTGTGGACTTGGATGCAAG
CAGCACTTAGTTGCGAAACCCCAGGGGGTCGGTCGCACTATGAGCAGCAG
TACGCGGGGCTCTTAGGCCACAACAGCGCTCCAGACACGCGGGTCGCCTA
CACCATGTGCTCTATGCTTTATGCGGCGATGGAAACGCACACGACCAAGA
CCAGCCACCTGTCACCATCATGGTGATGAAGCAAAGCAAGATGTGTGATC
ATGGCAACAGCTAACCAGCTAATGGTTCGAACAACATCCAGGTTTCGTTT
CACACATGTAAGGCAGGACAAAGCAGGGTGGCGGCTAATGGTTCCAACAA
CATCCAGGTTTCGTTTCACACATGTAAGGCAGGACAAAGCAGGGTGGCGG
TGCCGTGTGGCGAGGGAGGGAGTGGATCTCAAATGTCTACCCTCAGACCC
ATGTTTATGGCCAGAAAATTTTCCCGAAAATCTGAAAAATTCAAACATTT
TGCCAACGAACACTTTCAAACGCTTTTTATGGGAAAAAAATCATTGCCAA
AATGTGGCAAACTTTTTGAAAAGGGGCAAAAGTTGCTATTTTGCAGGGCT
CCTCTCGGGAATTTTCCCGTGAAACACGGTAACCGCAGGAGATCGACGAT
ATCAGCGCCATTCATGAAGAGCGAACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6771:9927..10653+

>mRNA_L-elsbetiae_contig6771.15529.1 ID=mRNA_L-elsbetiae_contig6771.15529.1|Name=mRNA_L-elsbetiae_contig6771.15529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig6771:9927..10653+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAACAGCTAACCAGCTAATGGTTCGAACAACATCCAGGTTTCGTTT
CACACATGTAAGGCAGGACAAAGCAGGGTGGCGGCTAATGGTTCCAACAA
CATCCAGGTTTCGTTTCACACATGTAAGGCAGGACAAAGCAGGGTGGCGG
TGCCGTGTGGCGAGGGAGGGAGTGGATCTCAAATGTCTACCCTCAGACCC
ATGTTTATGGCCAGAAAATTTTCCCGAAAATCTGAAAAATTCAAACATTT
TGCCAACGAACACTTTCAAACGCTTTTTATGGGAAAAAAATCATTGCCAA
AATGTGGCAAACTTTTTGAAAAGGGGCAAAAGTTGCTATTTTGCAGGGCT
CCTCTCGGGAATTTTCCCGTGAATGGCAACAGCTAACCAGCTAATGGTTC
GAACAACATCCAGGTTTCGTTTCACACATGTAAGGCAGGACAAAGCAGGG
TGGCGGCTAATGGTTCCAACAACATCCAGGTTTCGTTTCACACATGTAAG
GCAGGACAAAGCAGGGTGGCGGTGCCGTGTGGCGAGGGAGGGAGTGGATC
TCAAATGTCTACCCTCAGACCCATGTTTATGGCCAGAAAATTTTCCCGAA
AATCTGAAAAATTCAAACATTTTGCCAACGAACACTTTCAAACGCTTTTT
ATGGGAAAAAAATCATTGCCAAAATGTGGCAAACTTTTTGAAAAGGGGCA
AAAGTTGCTATTTTGCAGGGCTCCTCTCGGGAATTTTCCCGTGA
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