mRNA_L-elsbetiae_contig677.15526.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A6H5L0U1_9PHAE (Copper homeostasis protein cutC homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U1_9PHAE) HSP 1 Score: 313 bits (801), Expect = 2.500e-104 Identity = 180/271 (66.42%), Postives = 201/271 (74.17%), Query Frame = 1 Query: 1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVPRTA-PGGAAVSLGFVLEGARSAP-RQVTARRVSEMLDILGE 807 +VLECCLEGVESA+QARSGGAHRIELCA+LAQ GGVTPS GDIEGALLAV GS T+VHVL+RPRPGDFVYS LEKQVME+DVSAAVK+GAHGVVIG A A ACS+TFHRAFDCCTT+ +AA+E L+ LGVDRVLTSGR SAWDGRAVISRLVEAS GRI I+PGAGVT N KQLL TGA+EVHVGSACQE VPRTA A V +G V EG+ +A ++V+A RV EML I+ E Sbjct: 14 VVLECCLEGVESASQARSGGAHRIELCANLAQ-GGVTPSAGDIEGALLAVRGSHTRVHVLIRPRPGDFVYSVLEKQVMEKDVSAAVKAGAHGVVIGV-----------------------AKAXXXXXXXXXAKDACSITFHRAFDCCTTDEVAAMESLVRLGVDRVLTSGRHESAWDGRAVISRLVEASGGRIGILPGAGVTHGNVKQLLLHTGAKEVHVGSACQEKVPRTALREDATVCVGLVGEGSAAAGLKRVSAGRVCEMLTIIAE 260
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A1C4ZDH5_9ACTN (PF03932 family protein CutC n=32 Tax=Micromonospora TaxID=1873 RepID=A0A1C4ZDH5_9ACTN) HSP 1 Score: 192 bits (487), Expect = 5.060e-57 Identity = 113/227 (49.78%), Postives = 142/227 (62.56%), Query Frame = 1 Query: 10 ECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVP 690 E C++ VE A A GA R+ELC++L GG+TPS+G IE L AVN R +VHV+VRPR GDF+YS E + MERDV AAV +GAHG+VIGAL +G VD TT RL+ AA G S+TFHRAFD T +P AALE LI LGV RVLTSG+E S +G +I+ LV +AGRI +MPG G+T N +++ TGA E H + + P Sbjct: 5 EICIDSVEGAVAAEEAGADRVELCSALFD-GGLTPSLGTIETTLRAVN--RIRVHVIVRPRAGDFIYSPFEIEAMERDVRAAVAAGAHGIVIGALTAEGDVDVPTTRRLI------------------AAAGDASITFHRAFDM-TRDPHAALEQLIELGVHRVLTSGQEVSVLEGAPLIAELVRRAAGRIIVMPGGGITPRNIARIVEATGADEYHFAALVSSDSP 209
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A356FDM0_9BACT (PF03932 family protein CutC n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FDM0_9BACT) HSP 1 Score: 190 bits (482), Expect = 2.610e-56 Identity = 123/270 (45.56%), Postives = 161/270 (59.63%), Query Frame = 1 Query: 1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVPRTAPGGAAVSLGFVLEGARSAPR---QVTARRVSEMLDIL 801 ++LECC+ VESA A GGA R+ELC++L + GGVTPS I+ A ++ + VLVRPR G F Y+ +E VM+ DV++A +SGA G+V+GAL EDGS+D E T L++AA A S TFHRAFD T +PLAALE L LGVDRVLTSGR A DG ++ RL +A+AGRI I+PG G+ +N ++++ LTGA E+HVGSA V P A LG G R P + V +LD+L Sbjct: 4 ILLECCVGSVESAVNAALGGAARVELCSAL-ELGGVTPSRASIKMARERID---IPLFVLVRPRGGSFHYTPIELDVMKEDVASARRSGADGIVLGALREDGSIDAEQTAGLIEAAAGA------------------STTFHRAFDS-TPDPLAALETLCELGVDRVLTSGRAPRAEDGTELLGRLQQAAAGRIGILPGGGINHENCRRIIELTGAGEIHVGSA----VASAGPPPEAAGLG---PGGRETPAATGETDPEAVRRLLDLL 243
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A7K2YXT2_9ACTN (PF03932 family protein CutC n=1 Tax=Streptomyces sp. SID3343 TaxID=2690260 RepID=A0A7K2YXT2_9ACTN) HSP 1 Score: 189 bits (481), Expect = 5.460e-56 Identity = 110/220 (50.00%), Postives = 142/220 (64.55%), Query Frame = 1 Query: 1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVH 660 + E C++ V A A GAHR+ELCA L + GG+TPS+G IE L AV+ R VHV++RPR GDFV+ E MERDV AA ++GAHGVVIGAL +G +D+ T ERL+ AA G CSVTFHRAFD T +P A LE LI LGV RVLTSG+++S +G +I+ LV+ +AGRI +MPG G+T N ++++ TGA EVH Sbjct: 11 LTYEICIDDVPGALAAERAGAHRVELCADLFE-GGITPSLGLIETTLRAVDAIR--VHVIIRPRGGDFVFDEYEVAAMERDVIAAREAGAHGVVIGALTPEGDIDRPTIERLL------------------AAAGDCSVTFHRAFDM-TRDPFATLEALIELGVHRVLTSGQDSSVLEGAPLIADLVDRAAGRIVVMPGGGITARNIERVIAATGAHEVH 208
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A365H0Q2_9ACTN (PF03932 family protein CutC n=1 Tax=Actinomadura craniellae TaxID=2231787 RepID=A0A365H0Q2_9ACTN) HSP 1 Score: 189 bits (480), Expect = 5.720e-56 Identity = 110/230 (47.83%), Postives = 142/230 (61.74%), Query Frame = 1 Query: 1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVP 690 + E C++ V A A GAHR+ELCA+L + GG+TPS+G I AL AV+ R VHV+VRPR GDF++ A E ME DV+ ++G HGVV+GAL DG +D+ T RLV AA G SVTFHRAFD T +P AALE L+ LGVDRVLTSG + S +G +I+RLVE + RIA+MPG G+ NA +++ TGARE H + +E P Sbjct: 3 LTYEICIDSVAGAIAAEKAGAHRVELCAALFE-GGLTPSLGTIRAALAAVSSIR--VHVIVRPRGGDFIFDAHEIAAMEHDVALLREAGVHGVVVGALTPDGDIDEAVTGRLV------------------AAAGGLSVTFHRAFDM-TADPFAALETLVDLGVDRVLTSGHDVSVLEGAPLIARLVEQAGDRIAVMPGGGLNARNAARVVAATGAREFHFAALSEEASP 210
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: UPI001AD69583 (copper homeostasis protein CutC n=1 Tax=Micromonospora echinofusca TaxID=47858 RepID=UPI001AD69583) HSP 1 Score: 187 bits (474), Expect = 4.570e-55 Identity = 111/227 (48.90%), Postives = 140/227 (61.67%), Query Frame = 1 Query: 10 ECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVP 690 E C++ VE A A GA R+ELC +L + GG+TPSIG IE AL VN R +VHV+VRPR GDF+YS E M RDVSAAV +GAHGVVIGAL +G +D TT RL++AA G S+TFHRAFD +P AALE LI LGVDRVLTSG+E S +G +I+ LV + RI +MPG G+T N +++ T A E H + + + P Sbjct: 5 EICIDSVEGAVAAEEAGADRVELCCALFE-GGLTPSIGTIETALRTVN--RIRVHVIVRPRAGDFIYSPPEVDAMVRDVSAAVAAGAHGVVIGALTAEGDIDVPTTRRLIEAA------------------GGVSITFHRAFDM-VRDPFAALEQLIDLGVDRVLTSGQEVSVLEGAPLIAELVRRADRRIIVMPGGGITPRNIARIIEATRAEEYHFAALVKSDSP 209
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A835YMB7_9STRA (Copper homeostasis protein cutC homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMB7_9STRA) HSP 1 Score: 187 bits (474), Expect = 5.810e-55 Identity = 113/242 (46.69%), Postives = 145/242 (59.92%), Query Frame = 1 Query: 1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNG---SRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVPRTAPGGAAV 717 ++LE C+EGVE A A + G HRIELCA L + GG TPS+G +E + ++ +R KVHVLVRPRPG F YSA E + RDV A +GAHGV +GAL EDGS+D +V A A+ + A+ +VTFHRAFD C+T L AL L GVD VLTSGR A+AW+GR VI +V + ++ AGV+ N +L++ TGA VHVGSA E + AP G V Sbjct: 3 VLLEACVEGVEGAVAAAAAGVHRIELCAGLLE-GGTTPSLGTVEEVIACLSEQHLTRCKVHVLVRPRPGSFCYSAAEARAALRDVRAMRHAGAHGVAVGALREDGSIDTHALASIV------ALAKDDMQGAAGECPPPMAVTFHRAFDACSTPALQALAQLAERGVDGVLTSGRAATAWEGRHVIRDMVRSGVAGTTVIAAAGVSASNVARLMQATGAEAVHVGSAILEALEEAAPLGMGV 237
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: UPI00082B44A4 (copper homeostasis protein CutC n=1 Tax=Actinomadura hibisca TaxID=68565 RepID=UPI00082B44A4) HSP 1 Score: 186 bits (473), Expect = 6.470e-55 Identity = 108/230 (46.96%), Postives = 140/230 (60.87%), Query Frame = 1 Query: 1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVP 690 + E C++ V A A GAHR+ELC++L + GG+TPS+G + AL AV S +V+V++RPR GDF+Y E ME DV+ A ++GAHG+VIGAL DG +D+ TERL+ AA G VTFHRAFD +P AALE LI LGVDRVLTSG+E S +G +I+ LVE + RI +MPG GVT N ++L TG REVH + E P Sbjct: 3 LTYEICIDSVAGAIAAEQAGAHRVELCSALFE-GGLTPSLGTVRAALAAV--STIRVNVIIRPRGGDFIYDEHEVAAMEHDVALAREAGAHGIVIGALTADGEIDRAVTERLI------------------AAAGGLPVTFHRAFDMAA-DPFAALETLIELGVDRVLTSGQEVSVLEGAPLIAELVERAGDRIIVMPGGGVTSRNIGRILEATGVREVHFAALTDEPSP 210
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A1C3N4E9_9ACTN (PF03932 family protein CutC n=1 Tax=Micromonospora krabiensis TaxID=307121 RepID=A0A1C3N4E9_9ACTN) HSP 1 Score: 185 bits (470), Expect = 1.830e-54 Identity = 109/227 (48.02%), Postives = 142/227 (62.56%), Query Frame = 1 Query: 10 ECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVP 690 E C++ VE A A + GA R+ELC++L + GG+TPSIG IE AL +V+ R +VHV+VRPR GDF+YS E + M RDV AAV +GAHG+VIGAL +G VD TT L++AA G S+TFHRAFD +P AALE LI LGVDRVLTSG+E S +G +I+ LV + RI +MPG G+T N +++ TGA E H + + P Sbjct: 5 EICIDSVEGALAAEAAGAERVELCSALFE-GGLTPSIGTIETALRSVD--RIRVHVIVRPRAGDFIYSPSEVEAMVRDVRAAVAAGAHGIVIGALTAEGDVDVPTTRALIEAA------------------GGVSITFHRAFDM-VRDPYAALEQLIELGVDRVLTSGQEVSVLEGAPLIAELVRRAGDRIIVMPGGGITPRNIARIIEATGASEYHFAALVTSDGP 209
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A8J3QX66_9ACTN (PF03932 family protein CutC n=1 Tax=Rugosimonospora africana TaxID=556532 RepID=A0A8J3QX66_9ACTN) HSP 1 Score: 184 bits (466), Expect = 7.090e-54 Identity = 107/217 (49.31%), Postives = 140/217 (64.52%), Query Frame = 1 Query: 10 ECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVH 660 E C++ ++A A GGA R+ELCA+L GG+TPSIG IE A+ +V R +VHV+VRPR GDF+YS+ E + M RDV AAV +GAHG+VIGAL +G +D ETT RL++AA G S+TFHRAFD +P AALE LI LGVDRVLTSG+E+S +G +I+ LV+ + RI +M G GV N ++L TG E+H Sbjct: 5 EICIDSADAAVAAEQGGADRVELCAALFD-GGLTPSIGTIETAVSSVR--RIRVHVIVRPRGGDFIYSSREIETMVRDVRAAVAAGAHGIVIGALTPEGDIDVETTRRLIEAA------------------GDASITFHRAFDM-VRDPYAALEQLIELGVDRVLTSGQESSVLEGAPLIAELVKRAGDRIVVMAGGGVNERNIARILAETGVHELH 199 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig677.15526.1 >prot_L-elsbetiae_contig677.15526.1 ID=prot_L-elsbetiae_contig677.15526.1|Name=mRNA_L-elsbetiae_contig677.15526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=273bp MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVback to top mRNA from alignment at L-elsbetiae_contig677:28757..33186- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig677.15526.1 ID=mRNA_L-elsbetiae_contig677.15526.1|Name=mRNA_L-elsbetiae_contig677.15526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4430bp|location=Sequence derived from alignment at L-elsbetiae_contig677:28757..33186- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig677:28757..33186- >mRNA_L-elsbetiae_contig677.15526.1 ID=mRNA_L-elsbetiae_contig677.15526.1|Name=mRNA_L-elsbetiae_contig677.15526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1638bp|location=Sequence derived from alignment at L-elsbetiae_contig677:28757..33186- (Laminarionema elsbetiae ELsaHSoW15)back to top |