mRNA_L-elsbetiae_contig677.15526.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig677.15526.1
Unique NamemRNA_L-elsbetiae_contig677.15526.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A6H5L0U1_9PHAE (Copper homeostasis protein cutC homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U1_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 2.500e-104
Identity = 180/271 (66.42%), Postives = 201/271 (74.17%), Query Frame = 1
Query:    1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVPRTA-PGGAAVSLGFVLEGARSAP-RQVTARRVSEMLDILGE 807
            +VLECCLEGVESA+QARSGGAHRIELCA+LAQ GGVTPS GDIEGALLAV GS T+VHVL+RPRPGDFVYS LEKQVME+DVSAAVK+GAHGVVIG                        A           A  ACS+TFHRAFDCCTT+ +AA+E L+ LGVDRVLTSGR  SAWDGRAVISRLVEAS GRI I+PGAGVT  N KQLL  TGA+EVHVGSACQE VPRTA    A V +G V EG+ +A  ++V+A RV EML I+ E
Sbjct:   14 VVLECCLEGVESASQARSGGAHRIELCANLAQ-GGVTPSAGDIEGALLAVRGSHTRVHVLIRPRPGDFVYSVLEKQVMEKDVSAAVKAGAHGVVIGV-----------------------AKAXXXXXXXXXAKDACSITFHRAFDCCTTDEVAAMESLVRLGVDRVLTSGRHESAWDGRAVISRLVEASGGRIGILPGAGVTHGNVKQLLLHTGAKEVHVGSACQEKVPRTALREDATVCVGLVGEGSAAAGLKRVSAGRVCEMLTIIAE 260          
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A1C4ZDH5_9ACTN (PF03932 family protein CutC n=32 Tax=Micromonospora TaxID=1873 RepID=A0A1C4ZDH5_9ACTN)

HSP 1 Score: 192 bits (487), Expect = 5.060e-57
Identity = 113/227 (49.78%), Postives = 142/227 (62.56%), Query Frame = 1
Query:   10 ECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVP 690
            E C++ VE A  A   GA R+ELC++L   GG+TPS+G IE  L AVN  R +VHV+VRPR GDF+YS  E + MERDV AAV +GAHG+VIGAL  +G VD  TT RL+                  AA G  S+TFHRAFD  T +P AALE LI LGV RVLTSG+E S  +G  +I+ LV  +AGRI +MPG G+T  N  +++  TGA E H  +    + P
Sbjct:    5 EICIDSVEGAVAAEEAGADRVELCSALFD-GGLTPSLGTIETTLRAVN--RIRVHVIVRPRAGDFIYSPFEIEAMERDVRAAVAAGAHGIVIGALTAEGDVDVPTTRRLI------------------AAAGDASITFHRAFDM-TRDPHAALEQLIELGVHRVLTSGQEVSVLEGAPLIAELVRRAAGRIIVMPGGGITPRNIARIVEATGADEYHFAALVSSDSP 209          
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A356FDM0_9BACT (PF03932 family protein CutC n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FDM0_9BACT)

HSP 1 Score: 190 bits (482), Expect = 2.610e-56
Identity = 123/270 (45.56%), Postives = 161/270 (59.63%), Query Frame = 1
Query:    1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVPRTAPGGAAVSLGFVLEGARSAPR---QVTARRVSEMLDIL 801
            ++LECC+  VESA  A  GGA R+ELC++L + GGVTPS   I+ A   ++     + VLVRPR G F Y+ +E  VM+ DV++A +SGA G+V+GAL EDGS+D E T  L++AA  A                  S TFHRAFD  T +PLAALE L  LGVDRVLTSGR   A DG  ++ RL +A+AGRI I+PG G+  +N ++++ LTGA E+HVGSA    V    P   A  LG    G R  P    +     V  +LD+L
Sbjct:    4 ILLECCVGSVESAVNAALGGAARVELCSAL-ELGGVTPSRASIKMARERID---IPLFVLVRPRGGSFHYTPIELDVMKEDVASARRSGADGIVLGALREDGSIDAEQTAGLIEAAAGA------------------STTFHRAFDS-TPDPLAALETLCELGVDRVLTSGRAPRAEDGTELLGRLQQAAAGRIGILPGGGINHENCRRIIELTGAGEIHVGSA----VASAGPPPEAAGLG---PGGRETPAATGETDPEAVRRLLDLL 243          
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A7K2YXT2_9ACTN (PF03932 family protein CutC n=1 Tax=Streptomyces sp. SID3343 TaxID=2690260 RepID=A0A7K2YXT2_9ACTN)

HSP 1 Score: 189 bits (481), Expect = 5.460e-56
Identity = 110/220 (50.00%), Postives = 142/220 (64.55%), Query Frame = 1
Query:    1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVH 660
            +  E C++ V  A  A   GAHR+ELCA L + GG+TPS+G IE  L AV+  R  VHV++RPR GDFV+   E   MERDV AA ++GAHGVVIGAL  +G +D+ T ERL+                  AA G CSVTFHRAFD  T +P A LE LI LGV RVLTSG+++S  +G  +I+ LV+ +AGRI +MPG G+T  N ++++  TGA EVH
Sbjct:   11 LTYEICIDDVPGALAAERAGAHRVELCADLFE-GGITPSLGLIETTLRAVDAIR--VHVIIRPRGGDFVFDEYEVAAMERDVIAAREAGAHGVVIGALTPEGDIDRPTIERLL------------------AAAGDCSVTFHRAFDM-TRDPFATLEALIELGVHRVLTSGQDSSVLEGAPLIADLVDRAAGRIVVMPGGGITARNIERVIAATGAHEVH 208          
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A365H0Q2_9ACTN (PF03932 family protein CutC n=1 Tax=Actinomadura craniellae TaxID=2231787 RepID=A0A365H0Q2_9ACTN)

HSP 1 Score: 189 bits (480), Expect = 5.720e-56
Identity = 110/230 (47.83%), Postives = 142/230 (61.74%), Query Frame = 1
Query:    1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVP 690
            +  E C++ V  A  A   GAHR+ELCA+L + GG+TPS+G I  AL AV+  R  VHV+VRPR GDF++ A E   ME DV+   ++G HGVV+GAL  DG +D+  T RLV                  AA G  SVTFHRAFD  T +P AALE L+ LGVDRVLTSG + S  +G  +I+RLVE +  RIA+MPG G+   NA +++  TGARE H  +  +E  P
Sbjct:    3 LTYEICIDSVAGAIAAEKAGAHRVELCAALFE-GGLTPSLGTIRAALAAVSSIR--VHVIVRPRGGDFIFDAHEIAAMEHDVALLREAGVHGVVVGALTPDGDIDEAVTGRLV------------------AAAGGLSVTFHRAFDM-TADPFAALETLVDLGVDRVLTSGHDVSVLEGAPLIARLVEQAGDRIAVMPGGGLNARNAARVVAATGAREFHFAALSEEASP 210          
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: UPI001AD69583 (copper homeostasis protein CutC n=1 Tax=Micromonospora echinofusca TaxID=47858 RepID=UPI001AD69583)

HSP 1 Score: 187 bits (474), Expect = 4.570e-55
Identity = 111/227 (48.90%), Postives = 140/227 (61.67%), Query Frame = 1
Query:   10 ECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVP 690
            E C++ VE A  A   GA R+ELC +L + GG+TPSIG IE AL  VN  R +VHV+VRPR GDF+YS  E   M RDVSAAV +GAHGVVIGAL  +G +D  TT RL++AA                  G  S+TFHRAFD    +P AALE LI LGVDRVLTSG+E S  +G  +I+ LV  +  RI +MPG G+T  N  +++  T A E H  +  + + P
Sbjct:    5 EICIDSVEGAVAAEEAGADRVELCCALFE-GGLTPSIGTIETALRTVN--RIRVHVIVRPRAGDFIYSPPEVDAMVRDVSAAVAAGAHGVVIGALTAEGDIDVPTTRRLIEAA------------------GGVSITFHRAFDM-VRDPFAALEQLIDLGVDRVLTSGQEVSVLEGAPLIAELVRRADRRIIVMPGGGITPRNIARIIEATRAEEYHFAALVKSDSP 209          
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A835YMB7_9STRA (Copper homeostasis protein cutC homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMB7_9STRA)

HSP 1 Score: 187 bits (474), Expect = 5.810e-55
Identity = 113/242 (46.69%), Postives = 145/242 (59.92%), Query Frame = 1
Query:    1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNG---SRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVPRTAPGGAAV 717
            ++LE C+EGVE A  A + G HRIELCA L + GG TPS+G +E  +  ++    +R KVHVLVRPRPG F YSA E +   RDV A   +GAHGV +GAL EDGS+D      +V      A A+ +   A+       +VTFHRAFD C+T  L AL  L   GVD VLTSGR A+AW+GR VI  +V +      ++  AGV+  N  +L++ TGA  VHVGSA  E +   AP G  V
Sbjct:    3 VLLEACVEGVEGAVAAAAAGVHRIELCAGLLE-GGTTPSLGTVEEVIACLSEQHLTRCKVHVLVRPRPGSFCYSAAEARAALRDVRAMRHAGAHGVAVGALREDGSIDTHALASIV------ALAKDDMQGAAGECPPPMAVTFHRAFDACSTPALQALAQLAERGVDGVLTSGRAATAWEGRHVIRDMVRSGVAGTTVIAAAGVSASNVARLMQATGAEAVHVGSAILEALEEAAPLGMGV 237          
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: UPI00082B44A4 (copper homeostasis protein CutC n=1 Tax=Actinomadura hibisca TaxID=68565 RepID=UPI00082B44A4)

HSP 1 Score: 186 bits (473), Expect = 6.470e-55
Identity = 108/230 (46.96%), Postives = 140/230 (60.87%), Query Frame = 1
Query:    1 MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVP 690
            +  E C++ V  A  A   GAHR+ELC++L + GG+TPS+G +  AL AV  S  +V+V++RPR GDF+Y   E   ME DV+ A ++GAHG+VIGAL  DG +D+  TERL+                  AA G   VTFHRAFD    +P AALE LI LGVDRVLTSG+E S  +G  +I+ LVE +  RI +MPG GVT  N  ++L  TG REVH  +   E  P
Sbjct:    3 LTYEICIDSVAGAIAAEQAGAHRVELCSALFE-GGLTPSLGTVRAALAAV--STIRVNVIIRPRGGDFIYDEHEVAAMEHDVALAREAGAHGIVIGALTADGEIDRAVTERLI------------------AAAGGLPVTFHRAFDMAA-DPFAALETLIELGVDRVLTSGQEVSVLEGAPLIAELVERAGDRIIVMPGGGVTSRNIGRILEATGVREVHFAALTDEPSP 210          
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A1C3N4E9_9ACTN (PF03932 family protein CutC n=1 Tax=Micromonospora krabiensis TaxID=307121 RepID=A0A1C3N4E9_9ACTN)

HSP 1 Score: 185 bits (470), Expect = 1.830e-54
Identity = 109/227 (48.02%), Postives = 142/227 (62.56%), Query Frame = 1
Query:   10 ECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVHVGSACQENVP 690
            E C++ VE A  A + GA R+ELC++L + GG+TPSIG IE AL +V+  R +VHV+VRPR GDF+YS  E + M RDV AAV +GAHG+VIGAL  +G VD  TT  L++AA                  G  S+TFHRAFD    +P AALE LI LGVDRVLTSG+E S  +G  +I+ LV  +  RI +MPG G+T  N  +++  TGA E H  +    + P
Sbjct:    5 EICIDSVEGALAAEAAGAERVELCSALFE-GGLTPSIGTIETALRSVD--RIRVHVIVRPRAGDFIYSPSEVEAMVRDVRAAVAAGAHGIVIGALTAEGDVDVPTTRALIEAA------------------GGVSITFHRAFDM-VRDPYAALEQLIELGVDRVLTSGQEVSVLEGAPLIAELVRRAGDRIIVMPGGGITPRNIARIIEATGASEYHFAALVTSDGP 209          
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Match: A0A8J3QX66_9ACTN (PF03932 family protein CutC n=1 Tax=Rugosimonospora africana TaxID=556532 RepID=A0A8J3QX66_9ACTN)

HSP 1 Score: 184 bits (466), Expect = 7.090e-54
Identity = 107/217 (49.31%), Postives = 140/217 (64.52%), Query Frame = 1
Query:   10 ECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAVNGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLEDGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTTEPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGAGVTRDNAKQLLRLTGAREVH 660
            E C++  ++A  A  GGA R+ELCA+L   GG+TPSIG IE A+ +V   R +VHV+VRPR GDF+YS+ E + M RDV AAV +GAHG+VIGAL  +G +D ETT RL++AA                  G  S+TFHRAFD    +P AALE LI LGVDRVLTSG+E+S  +G  +I+ LV+ +  RI +M G GV   N  ++L  TG  E+H
Sbjct:    5 EICIDSADAAVAAEQGGADRVELCAALFD-GGLTPSIGTIETAVSSVR--RIRVHVIVRPRGGDFIYSSREIETMVRDVRAAVAAGAHGIVIGALTPEGDIDVETTRRLIEAA------------------GDASITFHRAFDM-VRDPYAALEQLIELGVDRVLTSGQESSVLEGAPLIAELVKRAGDRIVVMAGGGVNERNIARILAETGVHELH 199          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig677.15526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0U1_9PHAE2.500e-10466.42Copper homeostasis protein cutC homolog n=1 Tax=Ec... [more]
A0A1C4ZDH5_9ACTN5.060e-5749.78PF03932 family protein CutC n=32 Tax=Micromonospor... [more]
A0A356FDM0_9BACT2.610e-5645.56PF03932 family protein CutC n=1 Tax=Planctomycetes... [more]
A0A7K2YXT2_9ACTN5.460e-5650.00PF03932 family protein CutC n=1 Tax=Streptomyces s... [more]
A0A365H0Q2_9ACTN5.720e-5647.83PF03932 family protein CutC n=1 Tax=Actinomadura c... [more]
UPI001AD695834.570e-5548.90copper homeostasis protein CutC n=1 Tax=Micromonos... [more]
A0A835YMB7_9STRA5.810e-5546.69Copper homeostasis protein cutC homolog n=1 Tax=Tr... [more]
UPI00082B44A46.470e-5546.96copper homeostasis protein CutC n=1 Tax=Actinomadu... [more]
A0A1C3N4E9_9ACTN1.830e-5448.02PF03932 family protein CutC n=1 Tax=Micromonospora... [more]
A0A8J3QX66_9ACTN7.090e-5449.31PF03932 family protein CutC n=1 Tax=Rugosimonospor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig677contigL-elsbetiae_contig677:28757..33186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score198.7
Seed ortholog evalue3.4e-48
Seed eggNOG ortholog356851.JOAN01000003_gene1575
Preferred namecutC
KEGG koko:K06201
Hectar predicted targeting categoryother localisation
GOsGO:0006873,GO:0006875,GO:0006878,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0019725,GO:0030003,GO:0042221,GO:0042592,GO:0046688,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0098771
EggNOG free text desc.Participates in the control of copper homeostasis
EggNOG OGs2GKI8@201174,4DFAF@85008,COG3142@1,COG3142@2
COG Functional cat.P
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
BRITEko00000
Ec32 ortholog descriptioncopper homeostasis protein
Ec32 orthologEc-26_006050.1
Exons8
Model size819
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig677.15526.1prot_L-elsbetiae_contig677.15526.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig677 28757..33186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.1640384-CDS-L-elsbetiae_contig677:28756..288301622816750.1640384-CDS-L-elsbetiae_contig677:28756..28830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 28757..28830 -
1691683785.1547477-CDS-L-elsbetiae_contig677:28756..288301691683785.1547477-CDS-L-elsbetiae_contig677:28756..28830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 28757..28830 -
1622816750.1797063-CDS-L-elsbetiae_contig677:29375..295251622816750.1797063-CDS-L-elsbetiae_contig677:29375..29525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 29376..29525 -
1691683785.1696484-CDS-L-elsbetiae_contig677:29375..295251691683785.1696484-CDS-L-elsbetiae_contig677:29375..29525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 29376..29525 -
1622816750.190195-CDS-L-elsbetiae_contig677:30020..301331622816750.190195-CDS-L-elsbetiae_contig677:30020..30133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 30021..30133 -
1691683785.1784809-CDS-L-elsbetiae_contig677:30020..301331691683785.1784809-CDS-L-elsbetiae_contig677:30020..30133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 30021..30133 -
1622816750.2009387-CDS-L-elsbetiae_contig677:30771..309651622816750.2009387-CDS-L-elsbetiae_contig677:30771..30965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 30772..30965 -
1691683785.1872158-CDS-L-elsbetiae_contig677:30771..309651691683785.1872158-CDS-L-elsbetiae_contig677:30771..30965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 30772..30965 -
1622816750.213289-CDS-L-elsbetiae_contig677:31376..314361622816750.213289-CDS-L-elsbetiae_contig677:31376..31436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 31377..31436 -
1691683785.1959667-CDS-L-elsbetiae_contig677:31376..314361691683785.1959667-CDS-L-elsbetiae_contig677:31376..31436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 31377..31436 -
1622816750.2235672-CDS-L-elsbetiae_contig677:31840..319721622816750.2235672-CDS-L-elsbetiae_contig677:31840..31972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 31841..31972 -
1691683785.204853-CDS-L-elsbetiae_contig677:31840..319721691683785.204853-CDS-L-elsbetiae_contig677:31840..31972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 31841..31972 -
1622816750.235752-CDS-L-elsbetiae_contig677:32384..324471622816750.235752-CDS-L-elsbetiae_contig677:32384..32447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 32385..32447 -
1691683785.217466-CDS-L-elsbetiae_contig677:32384..324471691683785.217466-CDS-L-elsbetiae_contig677:32384..32447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 32385..32447 -
1622816750.2481334-CDS-L-elsbetiae_contig677:33153..331861622816750.2481334-CDS-L-elsbetiae_contig677:33153..33186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 33154..33186 -
1691683785.226947-CDS-L-elsbetiae_contig677:33153..331861691683785.226947-CDS-L-elsbetiae_contig677:33153..33186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig677 33154..33186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig677.15526.1

>prot_L-elsbetiae_contig677.15526.1 ID=prot_L-elsbetiae_contig677.15526.1|Name=mRNA_L-elsbetiae_contig677.15526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=273bp
MVLECCLEGVESAAQARSGGAHRIELCASLAQQGGVTPSIGDIEGALLAV
NGSRTKVHVLVRPRPGDFVYSALEKQVMERDVSAAVKSGAHGVVIGALLE
DGSVDQETTERLVQAAVAAAAAEVEAGRASAAATGACSVTFHRAFDCCTT
EPLAALEVLISLGVDRVLTSGREASAWDGRAVISRLVEASAGRIAIMPGA
GVTRDNAKQLLRLTGAREVHVGSACQENVPRTAPGGAAVSLGFVLEGARS
APRQVTARRVSEMLDILGEQPA*
back to top

mRNA from alignment at L-elsbetiae_contig677:28757..33186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig677.15526.1 ID=mRNA_L-elsbetiae_contig677.15526.1|Name=mRNA_L-elsbetiae_contig677.15526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4430bp|location=Sequence derived from alignment at L-elsbetiae_contig677:28757..33186- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCTGGAATGCTGTCTCGAAGGCGTGGAGGTGATTTCGCGAACGAT GCGAAAGAAAACTCTGTCGTGTTGAAATGACGACTCTAACACGTGCCACA GACTAAATAGATAGAGGTAGTCTATCTAGATAATAGAAAGTCTAGTGCAG TCTTTGCTTCAAACATGTTAGGTATACTAAGGAATTTGTTGAGCCTTGCT CGCGCTAGAGAGGGTTGTGGGGATTATACATATGCATGATTCATGTACCA AAAGTGAAAACATTCATCCCGTGTTTGCTGCAGGATGTTGGGCTTCGGTC AGATCCTCGTAGTTTATTTCCACCAGGGACGCCCAGCGGCAACGTTGCCG CATCACTGTCAGTATCATCTCTCTATCTCTCTATCCCTCCCTCTCTCCCT CTCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTTCCTAATCTTGACAG TCCTCCATGACGGCTTAGGTGATTGCTCGTCAAATCGTCGAATCTATTTC CAACAGCAGTACTGCCTGGCTGGATACCTGGCCGTTCGAAAGTCTCAAAC CCAGCCGCTGTCCTTGTTTCATCTCGACGAAGAATGCTGGCCGAGGCTAA CAACTACAACCTCAGCAGGGTGTTTTCCAGTTGTCCCCACATGAGGTGCC GCCCCCTCTCCCTTCTGCGTCACAACTTGCTGCTCACTCTCTAAATATAG CCAAGCTTTCTCACCACGTGTTTTCCCTGTATTTTTCAGTCTGCTGCCCA AGCCCGGAGTGGAGGTGCCCACCGTATAGAGCTCTGCGCTAGCCTAGCTC AGGTATTGATTCGTACAGAGTAGGGTCAGCCTCACAAATAACTCAGCTGT TTCGCATGAATGTCTCGATGAGCAGAGCAAAAGGAGTTCGCACACGTCAA GAGTCCAACAAGGTGGCGGGGCGTCCGCAGAAACGAGTTTGTGTCTATGT AGACTAGACACTGTACCTAGACTACCCGCCCGGGGGTGCACTGCACTGAG CGCGGCACTCCACCAGTTACCCCACGGAATGAAGGCATGATTTTCGGGAT CAGGTTAAAGGCACGAAAACGATACTGGTGTCTATTTACCACCAACTTTT TGGCGCCGGCCCCGGCGAAGTCGAGGGTCACATGCTGACAGACGCAGTCA ATTCTGTGGCGTGAACACATATCCCGTGTGCTGCTGCTGTGTCGTGGGAC GCTGACTTTTTTAGCAGGGGGGCGTGACGCCGTCGATAGGGGACATCGAA GGAGCCCTGCTGGCTGTGAACGGCTCCCGCACGAAAGTCCACGTGCTAGT CCGACCACGCCCGGGAGACTTCGTCTACTCTGCTCTTGAGAAGCAGGTAC ATACGTGTGTATATAACTGCACGCCGCCACGAGGAGTTGCAGCTGTAGTC TGCCCTAGAGAGAGAGAGCACTTCTCAGCCCAGGCGCCGCAACAACAAAT GCGGCGTGTGTAGTGAGTGACGGACAGAAGTTGTAAGCCGCTTGCGATTG CCTTGTATTTTTCAGGCCGCACAGACCACCTCTGTCTCGAAAGCAAATAC CAGAAAAGGCTGAGATTATCAGTGGGGGGGGGGGGGGGGAGCTGCCGCTC GCCTATTTGGCATCTCTTCCCTGGGAATCGATCGCGCCGTCTGTTCATTG CGTGCTACGAGCTGTCTGCGTGCTTTCGGTGGTTTGCTTTCTCCGTCTTC TTCCTTTGACGGGCTCTTTGGTAAATTCCGTCCTGTGTTGATCGATGCAG GTCATGGAGAGGGATGTTTCGGCGGCGGTGAAGTCTGGAGCGCACGGGGT CGTCATCGGGGTAGGTGTTCCACGCTTTTGCATTGGCGCGGCCTGACTCT CAGCTCGAGAGTCGTTTAACTCCCACCGCATTCTCTTCAACTCTGCTGGC AGCATGCACTGCAGATACTTGTTCTTCTGTGGGTGTTTTGCTGTATGTAC CTGCCCGCATGGCGCTGGGGATACCGGCACATGCACTTCGTGTAAGTATG CACACACTCCCTGGCCTTGATTGTTGGTCTCGTATGCGTGTGTTCAAGAG TGTTGAATTGGTTTATAACCGACTTCTCTTTGTGCTCACCGGCATTATGG GTACATTTTGGCGACTTGCTTGGCCAACGGGCCCTGCGCGCACATGAAAA AATATGAAATCCAAAGACGTTGGGGTCTCCGAGCGTTTTGCCTCGTCTTG TTTGGTGAAACTCTTCGAAAGGCTTTACTCGAAGACGGCAGCGTCGACCA GGAGACGACGGAGCGGCTTGTGCAGGCGGCGGTGGCGGCGGCGGCGGCAG AGGTGGAAGCAGGGAGAGCGTCAGCAGCAGCCACTGGCGCGTGCAGTGTA ACGTTCCATCGAGCTTTCGACTGTTGCACTACCGAACCGCTGGCTGCCTT GGAAGTTCTCATCAGGTGCCAAACTAACGAACGAACGAACGAATAGGGCC TAGGTGAATTCCAGATATCACCAGACACTGGCAGTCTGATATCAACATCT GACTCGAACACATGCGTGCGTCGCACCCATGCGGTCTCGAGGAGAAGACG TGTGTGTGCTCGCGGACTATTTGGGATCTTCTGCCGGTTGAACCTGGTTT TATTTTGCTTTGCCTTGTTCGGTTTTGATTTGGTGCTTTCCTCGAAACTG ATCTAGATGCGGTATAGATACAAATACTGCATTGCATAGCTTTGCGCTGC ACTGTGTAAGACTGAATCCTACGCGACTAGGCTAACGCGTTCCTCTAGGT GTATTGATGCAGCAGTTGATGTAGTTGCGCGTACAGCTTTTAAGTCCTAT GATAACGCTTTGCCAATTTACTGCACCGACTTTTTGGCTTGCTCGTAGCC TAAAGCGCTACTGGAGGCACTTTCTCAGATTATAAAGTCGATTATCTTGT TTTTATTTTGTACTGCTGTTCTCTTTCACGTTCGGAGCAACACCGTTTAC TAGAGAGCTGCCGTCGTATGTAGACCGAAGTTCAAACAAAAACAATTCAA GCTACAAATCGCTACATGATTCATGGCATATGTAACATGGCACTCACCTT CAGCTTAGGAGTCGATCGCGTGCTTACCTCGGGGCGAGAAGCAAGCGCCT GGGACGGGCGAGCCGTGATCTCCAGGCTCGTCGAGGCTTCAGCGGGGCGC ATTGCGATAATGCCAGGTACATGAACCCTCTGTCGTGCGGGAAGTAACTT CGTATGCCCATCCTTTTGACGCGTCAAAATGCTGCGTGTGTAGTAGTATC TCGCAAAGTACCTAACAGAGGGTGTGCTCGCATGCCTCAATATGTTCCGT CCGTGGATCAATCCGAGTTCTACGCGTGAGGGTAATCAAGCAACAGCTGC AACTGTCCGCTGTGGGGGTAATCCATCCCTATTCGAGGCACAATCACAAA AGTACCTATCGGTGTGTAGATGAAATGAGTATTGTACCCTACTTTCTATT CGGTCCGAAGGGGAGGTCGGTTTACACATTTGACACTTAAGGCAAAATGT AGTGCACTAAACTGCTGTTGTGATTACCTGAACTTTTAGTTTCCATAGTG CAACCGCAAGGGAGGGGGGGGGGCGGGGGGCGTATTCGTGCAGCCCCAAC CACCCTTGTGCCCGATCGATCGATGGCTGTGCGCTCGATGACTGCCTAAT CCGCGATAAAGGCGCGGGGGTGACAAGGGACAACGCGAAGCAGCTGTTGC GGCTTACGGGGGCGAGAGAAGTGCACGTTGGTTCCGCATGCCAGGAGAAC GTCCCTCGAACCGCCCCCGGGGGAGCCGCCGTTTCTTTGGGGTTTGTTCT CGAAGGTGCGCGTGTGTTCGTGTGCTGTAACCGACCGGCGATCGACGCCG CGTCTGCCTGCCGTGTGGCGTGCATTTCGCCGGTCAGTCCAGACCTTTGG TTCACTTTCAGACTTTTTGGGTGAGACGCGGACAGAAGAGTTCTGATTGT CTTTTTCGAAAATGGATCAATCGGGCCTTGTTGTTTTTTTTTTCTTTTGT TTACAGGATCAGAGTTTAGCACAATCCAAGTACGTACAACGTTAAAACTC CGTGTTTGCCAAACCCTACATACATACGATATTTGAAAGAATAGGATCAT TCGGGAGTGAGCGCATGAAATCCGTTGCAACTATACTTGTACGAAGTATG TATGTTGTATGTATGTATGTATGTATGTATGTATGTAGCTTTGGTTGAAA CGGTCTGGAATCCATGGCGCAACGCCAAGGATTCGAACGAAGCGGTCCCG GAGGGGGCAGGAATACGTCTGCTCCGCGCTCGCAAGCGGGGTGGTTGTGC TTGTTGATGCCGCGGCCCCAGTAACCAAGAAACGAATCGTCTCTCCGGAT TGGCAGGTTCCGCGCCCAGGCAAGTCACGGCTCGTCGAGTGTCTGAGATG CTCGACATCTTGGGCGAACAGCCGGCGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig677:28757..33186-

>mRNA_L-elsbetiae_contig677.15526.1 ID=mRNA_L-elsbetiae_contig677.15526.1|Name=mRNA_L-elsbetiae_contig677.15526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1638bp|location=Sequence derived from alignment at L-elsbetiae_contig677:28757..33186- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCTGGAATGCTGTCTCGAAGGCGTGGAGATGGTGCTGGAATGCTG
TCTCGAAGGCGTGGAGTCTGCTGCCCAAGCCCGGAGTGGAGGTGCCCACC
GTATAGAGCTCTGCGCTAGCCTAGCTCAGTCTGCTGCCCAAGCCCGGAGT
GGAGGTGCCCACCGTATAGAGCTCTGCGCTAGCCTAGCTCAGCAGGGGGG
CGTGACGCCGTCGATAGGGGACATCGAAGGAGCCCTGCTGGCTGTGAACG
GCTCCCGCACGAAAGTCCACGTGCTAGTCCGACCACGCCCGGGAGACTTC
GTCTACTCTGCTCTTGAGAAGCAGCAGGGGGGCGTGACGCCGTCGATAGG
GGACATCGAAGGAGCCCTGCTGGCTGTGAACGGCTCCCGCACGAAAGTCC
ACGTGCTAGTCCGACCACGCCCGGGAGACTTCGTCTACTCTGCTCTTGAG
AAGCAGGTCATGGAGAGGGATGTTTCGGCGGCGGTGAAGTCTGGAGCGCA
CGGGGTCGTCATCGGGGTCATGGAGAGGGATGTTTCGGCGGCGGTGAAGT
CTGGAGCGCACGGGGTCGTCATCGGGGCTTTACTCGAAGACGGCAGCGTC
GACCAGGAGACGACGGAGCGGCTTGTGCAGGCGGCGGTGGCGGCGGCGGC
GGCAGAGGTGGAAGCAGGGAGAGCGTCAGCAGCAGCCACTGGCGCGTGCA
GTGTAACGTTCCATCGAGCTTTCGACTGTTGCACTACCGAACCGCTGGCT
GCCTTGGAAGTTCTCATCAGGCTTTACTCGAAGACGGCAGCGTCGACCAG
GAGACGACGGAGCGGCTTGTGCAGGCGGCGGTGGCGGCGGCGGCGGCAGA
GGTGGAAGCAGGGAGAGCGTCAGCAGCAGCCACTGGCGCGTGCAGTGTAA
CGTTCCATCGAGCTTTCGACTGTTGCACTACCGAACCGCTGGCTGCCTTG
GAAGTTCTCATCAGCTTAGGAGTCGATCGCGTGCTTACCTCGGGGCGAGA
AGCAAGCGCCTGGGACGGGCGAGCCGTGATCTCCAGGCTCGTCGAGGCTT
CAGCGGGGCGCATTGCGATAATGCCAGCTTAGGAGTCGATCGCGTGCTTA
CCTCGGGGCGAGAAGCAAGCGCCTGGGACGGGCGAGCCGTGATCTCCAGG
CTCGTCGAGGCTTCAGCGGGGCGCATTGCGATAATGCCAGGCGCGGGGGT
GACAAGGGACAACGCGAAGCAGCTGTTGCGGCTTACGGGGGCGAGAGAAG
TGCACGTTGGTTCCGCATGCCAGGAGAACGTCCCTCGAACCGCCCCCGGG
GGAGCCGCCGTTTCTTTGGGGTTTGTTCTCGAAGGTGCGCGCGCGGGGGT
GACAAGGGACAACGCGAAGCAGCTGTTGCGGCTTACGGGGGCGAGAGAAG
TGCACGTTGGTTCCGCATGCCAGGAGAACGTCCCTCGAACCGCCCCCGGG
GGAGCCGCCGTTTCTTTGGGGTTTGTTCTCGAAGGTGCGCGTTCCGCGCC
CAGGCAAGTCACGGCTCGTCGAGTGTCTGAGATGCTCGACATCTTGGGCG
AACAGCCGGCGTGAGTTCCGCGCCCAGGCAAGTCACGGCTCGTCGAGTGT
CTGAGATGCTCGACATCTTGGGCGAACAGCCGGCGTGA
back to top