mRNA_L-elsbetiae_contig6757.15509.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6757.15509.1
Unique NamemRNA_L-elsbetiae_contig6757.15509.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6757.15509.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.310e-13
Identity = 66/108 (61.11%), Postives = 73/108 (67.59%), Query Frame = 2 
Query:   35 AGLEGLPPAPAARQPGKLV--SRHHQNVSVSAGSLERQHSPPVLQQQXXXXXXXXXXXXXXXXXX---YEAQLEMFQRRQANGGRADRDPYPGDCPPLSPEPLSPGSS 343
            A +EGLPPAPA R PG L+  +   +    S  ++ERQ SP      XXXXXXXXXXXXXXXXX    YEAQLEMF+RRQANGG      YPGDCPPLSPE  SP SS
Sbjct: 1954 ADVEGLPPAPAPRTPGPLLGCAGSRKEALSSPTAVERQQSPTXXXXXXXXXXXXXXXXXXXXXXVDPEYEAQLEMFRRRQANGGGGQMAHYPGDCPPLSPESHSPPSS 2061
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BLAST of mRNA_L-elsbetiae_contig6757.15509.1 vs. uniprot
Match: A0A6H5KG36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG36_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.320e-13
Identity = 57/120 (47.50%), Postives = 66/120 (55.00%), Query Frame = 2 
Query:   35 AGLEGLPPAPAARQPGKLV--SRHHQNVSVSAGSLERQHSPPVLQQQXXXXXXXXXXXXXXXXXX---------------YEAQLEMFQRRQANGGRADRDPYPGDCPPLSPEPLSPGSS 343
            A ++GLPPAPA R PG L+  +   +       ++ERQ SP  +QQQ           XXXXXXX               YEAQLEMF+RRQANGG      YPGDCPPLSPE  SP SS
Sbjct: 2374 ADVKGLPPAPAPRTPGPLLGCAGLRKEALSCTTAVERQQSPTSVQQQCVQRHQQQLVQXXXXXXXXXXXXXXXQPHVDSEYEAQLEMFRRRQANGGGGQMAHYPGDCPPLSPESHSPPSS 2493
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6757.15509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHU3_ECTSI1.310e-1361.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG36_9PHAE3.320e-1347.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6757contigL-elsbetiae_contig6757:7022..7379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size358
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.4580553-CDS-L-elsbetiae_contig6757:7021..73781622816748.4580553-CDS-L-elsbetiae_contig6757:7021..7378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6757 7022..7378 +
1691683783.8306086-CDS-L-elsbetiae_contig6757:7021..73781691683783.8306086-CDS-L-elsbetiae_contig6757:7021..7378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6757 7022..7378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6757.15509.1prot_L-elsbetiae_contig6757.15509.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6757 7022..7378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6757.15509.1

>prot_L-elsbetiae_contig6757.15509.1 ID=prot_L-elsbetiae_contig6757.15509.1|Name=mRNA_L-elsbetiae_contig6757.15509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
GGGGGGSAPWRRRPRRLATCSGSPATGEAGLAAPPERQRQRRVARAAAFA
PRASAAAAAAAATAGTISAAEGRRVRGPAGDVSTPAGQWGPRGQGSLPRG
LPPALPGAAFSWLLCRWRW
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mRNA from alignment at L-elsbetiae_contig6757:7022..7379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6757.15509.1 ID=mRNA_L-elsbetiae_contig6757.15509.1|Name=mRNA_L-elsbetiae_contig6757.15509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=358bp|location=Sequence derived from alignment at L-elsbetiae_contig6757:7022..7379+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGTGGCGGTGGCGGGAGCGCCCCTTGGAGGCGCAGGCCTCGAAGGCT
TGCCACCTGCTCCGGCAGCCCGGCAACCGGGGAAGCTGGTCTCGCGGCAC
CACCAGAACGTCAGCGTCAGCGCCGGGTCGCTAGAGCGGCAGCATTCGCC
CCCCGTGCTTCAGCAGCAGCAGCAGCAGCTGCAGCTACTGCAGGCACAAT
CTCAGCGGCAGAGGGACGCCGAGTACGAGGCCCAGCTGGAGATGTTTCAA
CGCCGGCAGGCCAATGGGGGCCGCGCGGACAGGGATCCTTACCCCGGGGA
CTGCCCCCCGCTCTCCCCGGAGCCGCTTTCTCCTGGCTCCTCTGCCGGTG
GCGGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6757:7022..7379+

>mRNA_L-elsbetiae_contig6757.15509.1 ID=mRNA_L-elsbetiae_contig6757.15509.1|Name=mRNA_L-elsbetiae_contig6757.15509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig6757:7022..7379+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGTGGCGGTGGCGGGAGCGCCCCTTGGAGGCGCAGGCCTCGAAGGCT
TGCCACCTGCTCCGGCAGCCCGGCAACCGGGGAAGCTGGTCTCGCGGCAC
CACCAGAACGTCAGCGTCAGCGCCGGGTCGCTAGAGCGGCAGCATTCGCC
CCCCGTGCTTCAGCAGCAGCAGCAGCAGCTGCAGCTACTGCAGGCACAAT
CTCAGCGGCAGAGGGACGCCGAGTACGAGGCCCAGCTGGAGATGTTTCAA
CGCCGGCAGGCCAATGGGGGCCGCGCGGACAGGGATCCTTACCCCGGGGA
CTGCCCCCCGCTCTCCCCGGAGCCGCTTTCTCCTGGCTCCTCTGCCGGTG
GCGGTGGGGCGGTGGCGGTGGCGGGAGCGCCCCTTGGAGGCGCAGGCCTC
GAAGGCTTGCCACCTGCTCCGGCAGCCCGGCAACCGGGGAAGCTGGTCTC
GCGGCACCACCAGAACGTCAGCGTCAGCGCCGGGTCGCTAGAGCGGCAGC
ATTCGCCCCCCGTGCTTCAGCAGCAGCAGCAGCAGCTGCAGCTACTGCAG
GCACAATCTCAGCGGCAGAGGGACGCCGAGTACGAGGCCCAGCTGGAGAT
GTTTCAACGCCGGCAGGCCAATGGGGGCCGCGCGGACAGGGATCCTTACC
CCGGGGACTGCCCCCCGCTCTCCCCGGAGCCGCTTTCTCCTGGCTCCTCT
GCCGGTGGCGGTGG
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