mRNA_L-elsbetiae_contig6752.15501.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6752.15501.1
Unique NamemRNA_L-elsbetiae_contig6752.15501.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Match: D8LCV8_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV8_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.070e-54
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 258
            VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSV+SMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL
Sbjct:   82 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 167
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BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Match: A0A1Z5KCD4_FISSO (Ubiquitin-conjugating enzyme E2 G2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCD4_FISSO)

HSP 1 Score: 153 bits (386), Expect = 3.160e-45
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQD 252
            VY DG+VCISILHPPGED+FN+QE+AEERWRPILGVE I+VSVISMLSDPNDESPAN+DAAVMWRNDR AFKKK R +VRKSQ+
Sbjct:   41 VYTDGKVCISILHPPGEDEFNQQESAEERWRPILGVEQILVSVISMLSDPNDESPANLDAAVMWRNDRAAFKKKVRQVVRKSQE 124
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BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Match: A0A1Z5JLS8_FISSO (Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5JLS8_FISSO)

HSP 1 Score: 154 bits (389), Expect = 3.930e-45
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQD 252
            VY DGRVCISILHPPGED+FN+QE+AEERWRPILGVE I+VSVISMLSDPNDESPAN+DAAVMWRNDR AFKKK R +VRKSQ+
Sbjct:   82 VYTDGRVCISILHPPGEDEFNQQESAEERWRPILGVEQILVSVISMLSDPNDESPANLDAAVMWRNDRAAFKKKVRQVVRKSQE 165
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BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Match: A0A4D9D8W7_9STRA (UBC core domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8W7_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.390e-44
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 258
            VY DGRVCISILHPPGED+FN QE+A+ERWRPILGVE IIVSVISMLSDPNDESPANIDAAV WRNDR  FKK+ R +VRKSQ+ L
Sbjct:   81 VYEDGRVCISILHPPGEDRFNSQESADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQWRNDRAGFKKRVRAVVRKSQEDL 166
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BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Match: A0A836CP86_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP86_9STRA)

HSP 1 Score: 149 bits (376), Expect = 3.680e-43
Identity = 69/84 (82.14%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    1 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQD 252
            VY DGRVCISILHPPGED+FN+QETAEERWRPILGVE II+SVISMLSDPNDESPANIDAAV WR++R+AFKK+ R  VRKS +
Sbjct:   82 VYEDGRVCISILHPPGEDRFNDQETAEERWRPILGVESIIMSVISMLSDPNDESPANIDAAVQWRSERDAFKKRVRKCVRKSHE 165
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BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Match: A0A7S3QJH2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJH2_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.380e-43
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQD 252
            VY DG+VCISILHPPGED  N QE+A+ERWRPILGVE I++SVISMLSDPNDESPAN+DAAV WRNDR+AFKKK R +VRKSQD
Sbjct:   83 VYKDGKVCISILHPPGEDAMNSQESADERWRPILGVEQILISVISMLSDPNDESPANLDAAVQWRNDRQAFKKKVRQIVRKSQD 166
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BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Match: A0A7S2LGN5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LGN5_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.490e-42
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    1 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQD 252
            VY DG+VCISILHPPGED  N QETA+ERWRPILGVE I++SVISMLSDPNDESPAN+DAAV WRNDR AFKKK R  VRKSQD
Sbjct:   82 VYEDGKVCISILHPPGEDAMNAQETADERWRPILGVEQILISVISMLSDPNDESPANLDAAVQWRNDRPAFKKKVRQCVRKSQD 165
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BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Match: A0A7S0GAY0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAY0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.830e-42
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQD 252
            VY DGRVCISILHPPGED  N QETA ERWRPILGVE I+VSV+SMLSDPNDESPAN+DAAVMWRND+ AFKKK + +VRK+Q+
Sbjct:   83 VYEDGRVCISILHPPGEDAMNSQETAAERWRPILGVEQILVSVVSMLSDPNDESPANLDAAVMWRNDKAAFKKKVKQIVRKTQE 166
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BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Match: A0A7S2XJN9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJN9_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.210e-41
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQD 252
            VY DG+VCISILHPPGED  N QETA ERWRPILGVE I++SVIS+LSDPNDESPAN+DAAVMWRNDR AFKKK R +VRKSQ+
Sbjct:   82 VYADGKVCISILHPPGEDAMNSQETAMERWRPILGVEQILISVISILSDPNDESPANLDAAVMWRNDRIAFKKKVRQVVRKSQE 165
[Close]
BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Match: A0A7S1ZEF8_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZEF8_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.120e-41
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQD 252
            VY DG+VCISILHPPGED+ N QE+A+ERWRPILGVE I++SVISMLSDPNDESPAN+DAAV WRNDR+ FKKK R +VRKSQ+
Sbjct:  125 VYEDGKVCISILHPPGEDEMNSQESADERWRPILGVEAILMSVISMLSDPNDESPANLDAAVQWRNDRQGFKKKVRQVVRKSQE 208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6752.15501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV8_ECTSI1.070e-5498.84UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A1Z5KCD4_FISSO3.160e-4584.52Ubiquitin-conjugating enzyme E2 G2 n=1 Tax=Fistuli... [more]
A0A1Z5JLS8_FISSO3.930e-4585.71Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacilla... [more]
A0A4D9D8W7_9STRA4.390e-4482.56UBC core domain-containing protein n=1 Tax=Nannoch... [more]
A0A836CP86_9STRA3.680e-4382.14Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S3QJH2_9STRA5.380e-4380.95Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2LGN5_9STRA1.490e-4282.14Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S0GAY0_9STRA5.830e-4279.76Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2XJN9_9STRA1.210e-4180.95Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1ZEF8_9STRA2.120e-4178.57Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6752contigL-elsbetiae_contig6752:8866..10397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.3
Seed ortholog evalue1.5e-42
Seed eggNOG ortholog2880.D8LCV8
KEGG koko:K10575
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0070534,GO:0070647,GO:0070936,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0425@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-07_007090.1
Exons2
Model size453
Cds size261
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6752.15501.1prot_L-elsbetiae_contig6752.15501.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6752 8866..10205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.9180086-CDS-L-elsbetiae_contig6752:8865..89341622816747.9180086-CDS-L-elsbetiae_contig6752:8865..8934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6752 8866..8934 +
1691683783.4492552-CDS-L-elsbetiae_contig6752:8865..89341691683783.4492552-CDS-L-elsbetiae_contig6752:8865..8934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6752 8866..8934 +
1622816747.933175-CDS-L-elsbetiae_contig6752:10013..102051622816747.933175-CDS-L-elsbetiae_contig6752:10013..10205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6752 10014..10205 +
1691683783.462648-CDS-L-elsbetiae_contig6752:10013..102051691683783.462648-CDS-L-elsbetiae_contig6752:10013..10205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6752 10014..10205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.9458578-UTR-L-elsbetiae_contig6752:10205..103971622816747.9458578-UTR-L-elsbetiae_contig6752:10205..10397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6752 10206..10397 +
1691683783.47467-UTR-L-elsbetiae_contig6752:10205..103971691683783.47467-UTR-L-elsbetiae_contig6752:10205..10397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6752 10206..10397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6752.15501.1

>prot_L-elsbetiae_contig6752.15501.1 ID=prot_L-elsbetiae_contig6752.15501.1|Name=mRNA_L-elsbetiae_contig6752.15501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
VYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDP
NDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL*
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mRNA from alignment at L-elsbetiae_contig6752:8866..10397+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6752.15501.1 ID=mRNA_L-elsbetiae_contig6752.15501.1|Name=mRNA_L-elsbetiae_contig6752.15501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1532bp|location=Sequence derived from alignment at L-elsbetiae_contig6752:8866..10397+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTACCCTGACGGAAGGGTGTGCATCTCCATCCTTCACCCGCCGGGGGA
GGACAAATTCAACGAGCAGGTGAGAGCTGCCCTGCCCTTTCCCCCCTTTT
TTCCCTCGTTCTTTGTTCTTTTACTCTCCTCGTCGCTACTGCGTTGTTGC
GCACACCGACCCGGGGGGGGTACGAATGCCCGCGTATTGATATAGATGTA
GATACATACCCTGGGACAGCTGAACCCTTCTCGCGATAGAACCCAAGGCA
AGAGCCGCAGGAGGAAGGTGGGGCGAAAAAAGAAAATGAAAAAGAAGAAA
AAAGCCCCAGTGTTCACCCTCACTGTCGCTAAAATAAATGGGAAGGACAC
ACACACACACACACACACCATGGAGCCCCCTGGCACGGGTTGGTCAGAGA
CCCCCATGGCCTCCACGGAACCAGCGGGGCTCGAAAGTGCCCCGCCCTTC
CCGTGTGACGACAACCTGACCCTTCTGTCGTCTCCGACGCCGGGACCCCG
GTAGTATCTAAGCAACCTGTGTGGATTGGCCAATAGAGCTTTTCTAGTGC
ATTTCCAAAGGGGGGAGCGTTTACCCCATGGTAGTTTTCCATCTTGCGCG
GCGTTTTCGGCACCCCCCTCTCTGTCAGTCACGGGGCGGCCCGGTAACGC
ACACGCTTGAGTAGCCACACACTTGTTCCAGGTTCAGTAGTCAAGGATAT
TATACAAATCGCTCGTTGGATATGGCGATATGAGACTCACACCGGCTCTA
AGCACCTACTCTACTTACGTGGTCGCCCACCCGGCGCCCTGCGCCCAACA
AAAGCTCGGCAGGAAACCGGTCCTTATTCGCGGAAAGTACCATCCCACCT
CGATCTTGTTCATACCACCTACAATATATTTCTATTTCTACGTATCTTCT
TGACGCTTGTATCGGGCCGCTCGCCCGCCCAACAACAACACAGCGACGGA
GCGCTGGCGCTGATGTAGTCAAACGTTTTGACCCACCCAGCCCAACCCAA
CCCAACCCAACCCACCCACTCACCCCGGGTGCTTCGCACACCCAATCCCG
GTGCTCCGCACACCCGACCAACCCATCGTGTCGAATCACAACAATCACAA
TACATATGTTGGAGTATTTTTTAACACCACAACACAACGACACGGCAGGA
AACCGCGGAGGAGCGCTGGCGCCCGATCCTGGGGGTAGAGGGGATCATCG
TGAGCGTGATATCGATGCTCTCGGACCCGAACGACGAGTCGCCGGCCAAC
ATAGACGCAGCCGTCATGTGGCGAAATGATCGCGAAGCCTTCAAGAAGAA
GTCCCGCCTGTTAGTCCGCAAGTCTCAGGACGCGCTGTGATGCGGTCGGT
TCGTGAAATCATATGCGCGGTGGCATGCCTCGATAATGTTGGAGTCGGCG
TTTGGGGCGGGGGGGGTCGGGTTTTGGGTGGTGGTGACTTTTTGGTACCA
ATTTTTGTTTTTTTTTCTTCTGCTCTTCCTCCTTTCCTCCCCCTCTGTAC
TCGGCCTGGCCCGGCCAGCTGAGACCTACGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6752:8866..10397+

>mRNA_L-elsbetiae_contig6752.15501.1 ID=mRNA_L-elsbetiae_contig6752.15501.1|Name=mRNA_L-elsbetiae_contig6752.15501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig6752:8866..10397+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTACCCTGACGGAAGGGTGTGCATCTCCATCCTTCACCCGCCGGGGGA
GGACAAATTCAACGAGCAGGTGTACCCTGACGGAAGGGTGTGCATCTCCA
TCCTTCACCCGCCGGGGGAGGACAAATTCAACGAGCAGGAAACCGCGGAG
GAGCGCTGGCGCCCGATCCTGGGGGTAGAGGGGATCATCGTGAGCGTGAT
ATCGATGCTCTCGGACCCGAACGACGAGTCGCCGGCCAACATAGACGCAG
CCGTCATGTGGCGAAATGATCGCGAAGCCTTCAAGAAGAAGTCCCGCCTG
TTAGTCCGCAAGTCTCAGGACGCGCTGTGAGAAACCGCGGAGGAGCGCTG
GCGCCCGATCCTGGGGGTAGAGGGGATCATCGTGAGCGTGATATCGATGC
TCTCGGACCCGAACGACGAGTCGCCGGCCAACATAGACGCAGCCGTCATG
TGGCGAAATGATCGCGAAGCCTTCAAGAAGAAGTCCCGCCTGTTAGTCCG
CAAGTCTCAGGACGCGCTGTGA
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