mRNA_L-elsbetiae_contig6749.15495.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6749.15495.1
Unique NamemRNA_L-elsbetiae_contig6749.15495.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6749.15495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6749contigL-elsbetiae_contig6749:8373..9069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.2705677-CDS-L-elsbetiae_contig6749:8373..85991622816747.2705677-CDS-L-elsbetiae_contig6749:8373..8599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 8374..8599 -
1691683783.0236323-CDS-L-elsbetiae_contig6749:8373..85991691683783.0236323-CDS-L-elsbetiae_contig6749:8373..8599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 8374..8599 -
1622816747.2815747-CDS-L-elsbetiae_contig6749:9001..90691622816747.2815747-CDS-L-elsbetiae_contig6749:9001..9069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 9002..9069 -
1691683783.034779-CDS-L-elsbetiae_contig6749:9001..90691691683783.034779-CDS-L-elsbetiae_contig6749:9001..9069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 9002..9069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6749.15495.1prot_L-elsbetiae_contig6749.15495.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6749 8374..9069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6749.15495.1

>prot_L-elsbetiae_contig6749.15495.1 ID=prot_L-elsbetiae_contig6749.15495.1|Name=mRNA_L-elsbetiae_contig6749.15495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
FPLSTKVADFVAQALLQSKPADCMSTDQSVLDLLKKQGVSEKFLPSAAEG
IYSLNVIADTMSKCARYMSDCNPHRSLDVICLALDCPHKQICSSSSSS
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mRNA from alignment at L-elsbetiae_contig6749:8373..9069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6749.15495.1 ID=mRNA_L-elsbetiae_contig6749.15495.1|Name=mRNA_L-elsbetiae_contig6749.15495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=697bp|location=Sequence derived from alignment at L-elsbetiae_contig6749:8373..9069- (Laminarionema elsbetiae ELsaHSoW15)
TTCCCCCTCTCGACCAAGGTCGCAGATTTCGTCGCCCAGGCCTTGCTTCA
GTCCAAGCCAGCGGACTGGTGCGTGCGTGCGTGCCGTGTGTTCTCCGATT
GATTGATTGATTGATGATTGTTCGAATAATAAATCACACCTCGAGTTGAA
AGATACCCGACCTCGTAATCTGGGTGTTGTATGTAGGCGACACGGGTTTC
CTGAAATGAATACGGTACAAGTAGTGACCTGAACACCCCCTCCTGAATCG
AAGGCGTTCTCCAAGCATGTTTGAATTGAATTGAACCATTCTACGTCGGC
CCCCAGAGTAAGTAGTCAGTAAATCAAGTAGTTTATTTCCGCGTCCATGC
ATATTTGTCCATTTATTCACGACATTTGTTTGTTAAACATCGATTGTTAA
CTCACCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGCTGCCTCTTTC
TTGCTGTGTGTGCTCGTCAGCATGTCCACTGACCAGTCCGTCCTCGATTT
GCTGAAGAAGCAGGGCGTCAGCGAGAAGTTTCTGCCATCGGCCGCAGAGG
GCATCTACTCCCTCAACGTCATCGCTGATACGATGTCGAAATGCGCTCGC
TATATGAGTGATTGTAACCCCCATCGTTCACTAGATGTCATCTGTTTAGC
TTTGGATTGCCCGCATAAACAAATATGCTCGTCGTCGTCGTCGTCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6749:8373..9069-

>mRNA_L-elsbetiae_contig6749.15495.1 ID=mRNA_L-elsbetiae_contig6749.15495.1|Name=mRNA_L-elsbetiae_contig6749.15495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig6749:8373..9069- (Laminarionema elsbetiae ELsaHSoW15)
TTCCCCCTCTCGACCAAGGTCGCAGATTTCGTCGCCCAGGCCTTGCTTCA
GTCCAAGCCAGCGGACTGTTCCCCCTCTCGACCAAGGTCGCAGATTTCGT
CGCCCAGGCCTTGCTTCAGTCCAAGCCAGCGGACTGCATGTCCACTGACC
AGTCCGTCCTCGATTTGCTGAAGAAGCAGGGCGTCAGCGAGAAGTTTCTG
CCATCGGCCGCAGAGGGCATCTACTCCCTCAACGTCATCGCTGATACGAT
GTCGAAATGCGCTCGCTATATGAGTGATTGTAACCCCCATCGTTCACTAG
ATGTCATCTGTTTAGCTTTGGATTGCCCGCATAAACAAATATGCTCGTCG
TCGTCGTCGTCGCATGTCCACTGACCAGTCCGTCCTCGATTTGCTGAAGA
AGCAGGGCGTCAGCGAGAAGTTTCTGCCATCGGCCGCAGAGGGCATCTAC
TCCCTCAACGTCATCGCTGATACGATGTCGAAATGCGCTCGCTATATGAG
TGATTGTAACCCCCATCGTTCACTAGATGTCATCTGTTTAGCTTTGGATT
GCCCGCATAAACAAATATGCTCGTCGTCGTCGTCGTCG
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