mRNA_L-elsbetiae_contig6749.15494.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6749.15494.1
Unique NamemRNA_L-elsbetiae_contig6749.15494.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6749.15494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6749contigL-elsbetiae_contig6749:1636..6361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size904
Cds size903
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6749.15494.1prot_L-elsbetiae_contig6749.15494.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6749 1636..6360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.168375-CDS-L-elsbetiae_contig6749:1635..18291622816747.168375-CDS-L-elsbetiae_contig6749:1635..1829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 1636..1829 -
1691683782.9540377-CDS-L-elsbetiae_contig6749:1635..18291691683782.9540377-CDS-L-elsbetiae_contig6749:1635..1829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 1636..1829 -
1622816747.1835272-CDS-L-elsbetiae_contig6749:2695..27961622816747.1835272-CDS-L-elsbetiae_contig6749:2695..2796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 2696..2796 -
1691683782.9684029-CDS-L-elsbetiae_contig6749:2695..27961691683782.9684029-CDS-L-elsbetiae_contig6749:2695..2796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 2696..2796 -
1622816747.19409-CDS-L-elsbetiae_contig6749:3623..38891622816747.19409-CDS-L-elsbetiae_contig6749:3623..3889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 3624..3889 -
1691683782.9824288-CDS-L-elsbetiae_contig6749:3623..38891691683782.9824288-CDS-L-elsbetiae_contig6749:3623..3889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 3624..3889 -
1622816747.2092803-CDS-L-elsbetiae_contig6749:4809..49751622816747.2092803-CDS-L-elsbetiae_contig6749:4809..4975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 4810..4975 -
1691683782.9945989-CDS-L-elsbetiae_contig6749:4809..49751691683782.9945989-CDS-L-elsbetiae_contig6749:4809..4975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 4810..4975 -
1622816747.2222624-CDS-L-elsbetiae_contig6749:6184..63601622816747.2222624-CDS-L-elsbetiae_contig6749:6184..6360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 6185..6360 -
1691683783.0043404-CDS-L-elsbetiae_contig6749:6184..63601691683783.0043404-CDS-L-elsbetiae_contig6749:6184..6360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6749 6185..6360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.236093-UTR-L-elsbetiae_contig6749:6360..63611622816747.236093-UTR-L-elsbetiae_contig6749:6360..6361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6749 6361..6361 -
1691683783.013518-UTR-L-elsbetiae_contig6749:6360..63611691683783.013518-UTR-L-elsbetiae_contig6749:6360..6361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6749 6361..6361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6749.15494.1

>prot_L-elsbetiae_contig6749.15494.1 ID=prot_L-elsbetiae_contig6749.15494.1|Name=mRNA_L-elsbetiae_contig6749.15494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=301bp
MRAGCAMSSILLGTLGRPGFLPGVLVRDISLGVVDAEARLPAKSDGGTLS
ASGKSLQAKIAVFTHKGGFADGRARRKTGATVVEAQDRSQGGKVVTSTQT
TTPGVPPSLEIPMQLLRLFVSKAFLKNEADKCLEDNDFPLSCRPFLLGAD
CECDLPKEQHGSRPSPEEWRRQWDALKIVDGQKELCPDCGFSDPLREHTP
DRIDELLDTPVFGVKTVTAVNSVLKRCFSMAGFAPEGFSGYSFRKWGLNK
IFRTHGREAARVAASHENDNTIFFYVERRQLAAETNMQQMAGFLVQVRRK
*
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mRNA from alignment at L-elsbetiae_contig6749:1636..6361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6749.15494.1 ID=mRNA_L-elsbetiae_contig6749.15494.1|Name=mRNA_L-elsbetiae_contig6749.15494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4726bp|location=Sequence derived from alignment at L-elsbetiae_contig6749:1636..6361- (Laminarionema elsbetiae ELsaHSoW15)
GATGCGGGCAGGCTGCGCCATGTCATCCATCCTGTTGGGGACGCTCGGTC
GCCCGGGCTTCCTGCCCGGGGTGTTGGTCCGGGACATCTCCCTCGGTGTG
GTGGACGCCGAGGCGAGGCTACCGGCCAAGTCGGATGGCGGCACTCTCTC
CGCCAGTGGCAAGTCTCTCCAAGCCAAGTGAGCGGCAAACACGCTATGCA
GTGCTAAATATATAGCCACATACGGAGTCCATGTTTCTTCTGTGAGAGTA
CCCCGAGTACCTACGCTGCTGTTATTTTCGGCACAAACCGGCAGCAGTCG
CTTTTTGGAACACTGCAACTCGGTAGTACTTCCGAAATACACCCGTCGGC
AGGAGGAGGAGGAGGCGATAGGCTATTTAGCTTCCACCAGAGACCGCGTT
GGAGTACGCGAGCAGAATCGTGCCCTGCTTTATTTACTAAACGGCGCTCC
CGCGAGAAAGAGTGTGCCCGCCCGTGTGTTGCACAGTATGTATCTATCCT
AGCTAGAGAGCCTCGCTGGGTGACCAGGTTCGGATCGCGCTTGACCCCTT
CGGCGCGCTATATATACCATTCAATGAATAAATAAAAGCAGAGTCTTTCC
GCGAGAAGAGTCAAATTCCCGAGACTTTCTGCAGATAGATATTCAAGCAT
GTATGAAGGTGAAAAACCCTTACCTTACGGAGAAACACACACACACACAC
ACACACACACACACACACAGTAGTTAAACACGTAGCTTTTGATACAGAGT
CCATCGCTCTCATAATAGAGAAGGGTTTAAACCACACCCAGTAGAAACGC
GAGTAGCATAGGGGGGAAGCACTACACAGGGTACGCGAGGGATACCTCGG
CGTAGCGACGCCTAGAGTTTCCGGGTGGAAATAAGAGGCCCTCTCAGACG
AAATACGCCGAGAAAAAGAGAGAGAAGCGAATGCTCGAATGCACTGTGAA
GTGCACTGCATGCAGCCACACACACACGAGGAGTACCTCGGGAGAGAAAG
AGAGCGCAGAAAGCGGATGAAGGATGGAGACCGCAGTTTTCGGAATTCCG
GACTGATAACCAAAAGAAGCACCACAGCGATGACAGGGAGCGACGCCCAG
AATAATCGTTAATTATTGAAACAGATCTCTGTATTGTCGTCATGACAAGC
TGCACTACCCCCCAGCTGATAACAGCAGGCACTTAGAGGTGGGCGTTTAA
TTGTGCGTCTAGAGGGTGGGTGGGTGGGTGGGTCAATCAATGACGTCAGT
CAGCCGGTGCGCGCTATTTCTAATCAATCCAATCCAGATACACTAATAAT
AATGTGGGCGTTTGTTCTTATCTCCGTTTCAGTCAGTCGTCCTGCCTTCT
TGATGGTGTTCTATCTCCTGCTCGCCCGTCTGGCAGGATTGCCGTGTTCA
CGCACAAGGGCGGCTTCGCGGATGGCCGTGCCCGCCGCAAGACCGGCGCC
ACCGTGGTCGAGGCACAGGACCGTTCGCAAGGGGGCAAAGTCGTGACCTC
CACCCAAACAACGACCCCCGGTGTTCCACCCAGCCTCGAGATCCCTATGC
AGGTACGCATGCATGTATGCATCTATGCTTCTCCCGGGCGTTCCTTTTTC
TCTTCTTTCAGGGCGCTTGTATGTGAAGAACGCTTTTTTTTTTTCGGAAA
GACGGACGGACGGGAAGTTTATAATTTTCGCACGCACCACCAACAGAGAG
CTAAGAGACACACATAATGCACAGCACGGCAGGAGCTTTTTAGATAATAC
ATCTCGACATTTGTTTTTACACCGTTTCTCGTACGGTTAGACCCATGTTT
ATGGGAAAACAAATATTTTGTGCAAAATCTTGTGTATTTTGGCATTTGTG
GCCACTTTTCCTCGCAAAGAGCTCGGAATCAGATTTCCGCTTCTCAGGAA
CAGTCGAAGCTCTCGTCCAGACATCTTTAGATGAACTGTCTAATCTAGCA
CACTCCAGGTTTGATTTTCGGCCTCCGGAACAAGATGTGACAAAATCCAG
CCAAGAGGCCGTGTCCCGCAAATCTTCGGCCAACATTTGCGAGAACGCTG
TTTTTTGGCCAAATGTTGATAAAAATTGGTCCACGGCCAAAAATCAAACT
TGGAGTGTGCTAGATTAGACAGTTCATCTATAGATGTCTGGACGAGAGCT
TCGACTGTTCCTGAGAAGCGGAAATCTGATTCCGAGCTCTTTGCGAGGAA
ACGTGGCCACAAAGGCCAAAATACACAAGATTTTGCACAAAATATTTGTT
TTCCCATAAACATGGGTCTTATTTTTTAATTTTTTCAAACAAATAATTGT
TGGGGAAGGAGGGGGTGGGTGGGTGTGGTCGAGTCTGCCACACAGGCAAA
ACGTAAGTCGAGCTTCTGGCGCGTTTCATAGCCAGGCAAATTCCTGTTTC
CCGAAAGAAACCATTTTTAACACGACTCCCCGTCGCAATTTGATTTGCCG
GCTGGATCTCCTCTGGTCCCAGCTCCTTCGTTTGTTCGTGTCGAAGGCGT
TCCTGAAGAACGAGGCGGACAAGTGCCTGGAGGACAACGACTTCCCGCTT
TCCTGCAGACCCTTCCTGCTGGGCGCGGATTGCGAGTGTGACCTGCCCAA
GGAGCAGCACGGAAGCCGCCCGAGCCCCGAAGAGTGGAGGCGGCAGTGGG
ATGCACTCAAGATCGTGGACGGGCAAAAGGAGCTGTGCCCCGACTGTGGC
TTCTCTGACCCGTTACGCGAGCACACGCCGGATAGGATGTAGGTCTTTTT
TTTTTTATTGTCGGGTTGGCGCGTGTCTTGTGTCTAAATCAACTACCACG
TATGTACACTCCCGGGAAAAGAAAAGTTAAATAAATGTGTACTTACTCCG
TGACATCAGTTTTACCTTTAGGAAGTGAGGAAGAACCGGACTCGCGGACC
TGCTGCTGCTGTGTAGGTACAGTTTTTTTGTCTATGTTTTCTTCTTCACA
TTGACTCGAAGAGGGGCCCCTTCCTTCCTCCCTTCCTTCCTTTCTTCCTT
GTCGCGAGGACATCTCGCCAGAGACAGACAGAGAGAGAGAGAGAGAGAGA
GAGTATACGGAACCGTCGACACAGAGAAGCGTTCCTTTCTTTCTCCGACC
TAGGCCCCCGCCCCGTCGTCTGCTGTGCCTGCCTGGGATTTTAGGTAGCG
AGAGGGGGGTTCAGTCTTTCCTTATTTCCCTCGTCGACGGTGAGGTCGGT
CGAAGGTTGTCTTTGTGTACACACGCTACACACAATAAGCGCTATCCACC
ACCTACCTCCAGGGATGAGAGCGAGAGAGAAATAAAACACACTGTTTCGC
AAGATAAAGTCGCTCCCGCCGAGTTCGAACTCACGACCTGCCCACCTGCT
GTATGTAGAAGAAGGAGGCATCTAAATAAATAGTGTTCGGGGGTACCAAC
TGTTTCTTTAGACCACCGGGACGACCGGTGGTGAGATAGATACATGTAGA
TAGATGCTGAAATGCTTCCCCGGCGGGCACCCTCCCCTCTTTCCTCCGGA
CTGGTGGATGCCCCCCCCCCCTCCCCCTTTTTTTTCTGTTTTTCTTTCCG
TTTCTCGTTTGTCAGAGATGAGCTGCTGGACACCCCTGTTTTCGGTGTGA
AGACCGTGACGGCGGTCAACTCCGTGCTGAAGCGCTGCTTCTCGATGGCT
GGCTTCGCCCCTGAAGGTACATCGAGGAACGTAATGGGGGCCCAACTCCC
CGTCCTGTGTGACCCCGGTTGGGTGGTCTAGCTAGCCGTGGTGGAGGAAG
GAGGCGAGAAATATTTCGATGATGGGCGGGAAATTGTTTTCTCGTAGATC
CATATCTATATACATTGGTCCGGGAGAACTTCTCTTCCGTAATGTCATCA
GTAGGCTGTCGGCCTCCAATGGCCCAAACGAACGTCAGGATGACAGCCGC
GCTGTCTCTTTCAGTCGAAGAAAAACACGTCAGTAGCAGCGCTGTCTTTT
TTCGGTACAAATAACCCGAGGGGGACAGACCTGGACAGCTGTGTTGACAA
AGGAAAAAGAAAGACGGAGCGTGTTGATCAAGGGCGGGGCGCCCACACAG
AAGCACCCGGTTAGTGCTGTTGCTGTGCCTAGGAAAGGCAGCTGTTTCGT
CTGATTAATAAAGGGCCTGCTTTTTGCGGGAAAGTAGGCGTTTGAGCTCA
GAATCTTCGATTCAAAGATCTGGGTTCGTTTTTCTTTCGTTTTGCACCAC
CCTAGTCTTCTGTGCTAAACATGAGCTCGCTCCGAAGGGTGATCTTGTAT
GTACTTAGTTATTTGCGTGCGAACAAGGAAGGAAAAAAAAACAACCGCGT
AGGCTAATGGATAAGTACAGGTAGACATACGTAATTTTTTGTCTGGCCGT
AGACATACATACGTATGTATGTGTTAGGTATACAGAGGGATAGACAGGCA
TGCATTATTGTATGTACACATTTGTGTAAAGGGAAGATCCGTGGCTCCTC
CTCCTCCTACAATTCGTTTTTTCTCTTTTGATTTCGAAAATGTTTTTTTT
TTTGTGGCGCTGGCTGTTTGCGATTCCTGAAGGTTTCAGCGGGTACTCGT
TCCGGAAGTGGGGGCTTAACAAGATCTTTCGAACCCATGGGAGGGAGGCG
GCGAGGGTGGCTGCTAGCCACGAGAACGACAACACGATATTTTTTTACGT
GGAGCGACGCCAGCTGGCTGCGGAGACCAACATGCAGCAGATGGCGGGCT
TTCTTGTCCAGGTGAGAAGAAAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6749:1636..6361-

>mRNA_L-elsbetiae_contig6749.15494.1 ID=mRNA_L-elsbetiae_contig6749.15494.1|Name=mRNA_L-elsbetiae_contig6749.15494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1806bp|location=Sequence derived from alignment at L-elsbetiae_contig6749:1636..6361- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGCAGGCTGCGCCATGTCATCCATCCTGTTGGGGACGCTCGGTCG
CCCGGGCTTCCTGCCCGGGGTGTTGGTCCGGGACATCTCCCTCGGTGTGG
TGGACGCCGAGGCGAGGCTACCGGCCAAGTCGGATGGCGGCACTCTCTCC
GCCAGTGGCAAGTCTCTCCAAGCCAAATGCGGGCAGGCTGCGCCATGTCA
TCCATCCTGTTGGGGACGCTCGGTCGCCCGGGCTTCCTGCCCGGGGTGTT
GGTCCGGGACATCTCCCTCGGTGTGGTGGACGCCGAGGCGAGGCTACCGG
CCAAGTCGGATGGCGGCACTCTCTCCGCCAGTGGCAAGTCTCTCCAAGCC
AAGATTGCCGTGTTCACGCACAAGGGCGGCTTCGCGGATGGCCGTGCCCG
CCGCAAGACCGGCGCCACCGTGGTCGAGGCACAGGACCGTTCGCAAGGGG
GCAAAGTCGTGACCTCCACCCAAACAACGACCCCCGGTGTTCCACCCAGC
CTCGAGATCCCTATGCAGGATTGCCGTGTTCACGCACAAGGGCGGCTTCG
CGGATGGCCGTGCCCGCCGCAAGACCGGCGCCACCGTGGTCGAGGCACAG
GACCGTTCGCAAGGGGGCAAAGTCGTGACCTCCACCCAAACAACGACCCC
CGGTGTTCCACCCAGCCTCGAGATCCCTATGCAGCTCCTTCGTTTGTTCG
TGTCGAAGGCGTTCCTGAAGAACGAGGCGGACAAGTGCCTGGAGGACAAC
GACTTCCCGCTTTCCTGCAGACCCTTCCTGCTGGGCGCGGATTGCGAGTG
TGACCTGCCCAAGGAGCAGCACGGAAGCCGCCCGAGCCCCGAAGAGTGGA
GGCGGCAGTGGGATGCACTCAAGATCGTGGACGGGCAAAAGGAGCTGTGC
CCCGACTGTGGCTTCTCTGACCCGTTACGCGAGCACACGCCGGATAGGAT
CTCCTTCGTTTGTTCGTGTCGAAGGCGTTCCTGAAGAACGAGGCGGACAA
GTGCCTGGAGGACAACGACTTCCCGCTTTCCTGCAGACCCTTCCTGCTGG
GCGCGGATTGCGAGTGTGACCTGCCCAAGGAGCAGCACGGAAGCCGCCCG
AGCCCCGAAGAGTGGAGGCGGCAGTGGGATGCACTCAAGATCGTGGACGG
GCAAAAGGAGCTGTGCCCCGACTGTGGCTTCTCTGACCCGTTACGCGAGC
ACACGCCGGATAGGATAGATGAGCTGCTGGACACCCCTGTTTTCGGTGTG
AAGACCGTGACGGCGGTCAACTCCGTGCTGAAGCGCTGCTTCTCGATGGC
TGGCTTCGCCCCTGAAGAGATGAGCTGCTGGACACCCCTGTTTTCGGTGT
GAAGACCGTGACGGCGGTCAACTCCGTGCTGAAGCGCTGCTTCTCGATGG
CTGGCTTCGCCCCTGAAGGTTTCAGCGGGTACTCGTTCCGGAAGTGGGGG
CTTAACAAGATCTTTCGAACCCATGGGAGGGAGGCGGCGAGGGTGGCTGC
TAGCCACGAGAACGACAACACGATATTTTTTTACGTGGAGCGACGCCAGC
TGGCTGCGGAGACCAACATGCAGCAGATGGCGGGCTTTCTTGTCCAGGTG
AGAAGAAAATAGGTTTCAGCGGGTACTCGTTCCGGAAGTGGGGGCTTAAC
AAGATCTTTCGAACCCATGGGAGGGAGGCGGCGAGGGTGGCTGCTAGCCA
CGAGAACGACAACACGATATTTTTTTACGTGGAGCGACGCCAGCTGGCTG
CGGAGACCAACATGCAGCAGATGGCGGGCTTTCTTGTCCAGGTGAGAAGA
AAATAG
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