mRNA_L-elsbetiae_contig6742.15490.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6742.15490.1
Unique NamemRNA_L-elsbetiae_contig6742.15490.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Match: D8LFV5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV5_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 2.840e-37
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    4 GYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGFGVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLIT 291
            GY+AG+L S+ M GR++SAY WG+VADR G RPV+ +SL  T  LAV FG STTF WA   RFLLGLLNG+  ++PTLVSE+CGKEHEV+G+  +T
Sbjct:    4 GYFAGLLSSSFMFGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPTLVSEICGKEHEVVGLGAVT 99          
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 8.400e-36
Identity = 65/125 (52.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    1 AGYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGFGVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLITMVWSLGALLGSGIGGVLAQPAAHYPFTF 375
            AGYYAG + SA M GR+ S+Y WG  AD +G  PVI+  L    VL++ FG+ST+F WA   RFLLG+LNGL+ +   + SEVCGKEHE  GM+ +    S+G ++G G+GG+LA+PA HYP  F
Sbjct:   68 AGYYAGYVSSAFMVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCRFLLGVLNGLLGISKAMTSEVCGKEHEATGMAYVLGCASIGLVIGPGLGGLLAEPATHYPTVF 192          
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 9.490e-36
Identity = 64/125 (51.20%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 AGYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGFGVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLITMVWSLGALLGSGIGGVLAQPAAHYPFTF 375
            AGYYAG L SA M GR          ADRYG  PV++I L    VL++ FG+ST F+WA   RFLLG +NGLI +   ++SE+CGK+HE +GM  +T  WS G ++G   GG+LAQPA HYP  F
Sbjct:   79 AGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVF 203          
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.280e-35
Identity = 65/125 (52.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 AGYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGFGVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLITMVWSLGALLGSGIGGVLAQPAAHYPFTF 375
            AGYYAG L SA M GR          ADRYG  PV++I L    VL++ FG+ST F+WA   RFLLG +NGLI +   ++SE+CGK+HE +GM  IT  WS G ++G   GG+LAQPA HYP  F
Sbjct:   47 AGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMGYITGCWSFGLVIGPAFGGLLAQPATHYPNVF 171          
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Match: A0A6H5JZQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.050e-33
Identity = 58/96 (60.42%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    4 GYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGFGVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLIT 291
            GY+AG+L S+ M GR++SAY WG++ADR G RPV+ +SL  T  LAV FG STTF WA   RFLLGLLNG+  ++P+LVSE+CGKEHEV+G+  +T
Sbjct:    4 GYFAGLLSSSFMVGRVISAYFWGIIADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPSLVSEICGKEHEVVGLGAVT 99          
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.060e-33
Identity = 61/125 (48.80%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 AGYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGFGVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLITMVWSLGALLGSGIGGVLAQPAAHYPFTF 375
            AGYYAG L SA M GR  ++      ADRYG  PV++I L    VL++ FG+ST F+WA   RFLLG +N L+ +   ++SE+CGK+HE +GM  +T   S G ++G   GG+LAQPA HYP  F
Sbjct:  115 AGYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMGYVTGCSSFGLVIGPAFGGLLAQPATHYPNVF 239          
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Match: A0A835H3K5_9MAGN (MFS domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835H3K5_9MAGN)

HSP 1 Score: 124 bits (311), Expect = 1.190e-30
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    4 GYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGFGVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLITMVWSLGALLGSGIGGVLAQPAAHYPFTF 375
            GY+AG + +A M GR +++  WGV+ADRYG +PVI IS     +    FG+ST+F+ A   RFLLG +NGL+       SEVC +EHE LG+SL++M W +  ++G  IGG+LAQPA  +P  F
Sbjct:  216 GYFAGFVGAAYMFGRALTSIMWGVIADRYGRKPVILISAASVVLFNTLFGLSTSFWMAIVTRFLLGSMNGLLGTIVAYASEVCREEHEGLGLSLVSMAWGIAIIIGPAIGGLLAQPAEKFPDLF 339          
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Match: A0A835H706_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835H706_9MAGN)

HSP 1 Score: 123 bits (309), Expect = 3.060e-30
Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    4 GYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGFGVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLITMVWSLGALLGSGIGGVLAQPAAHYP 366
            G+YAG + +A M GR +++  WGV+ADRYG +PVI I      +    FG+ST+F+ A F RFLLG +NGL+       SEVC  EH+ LG+SL++  W +G ++G  IGG LAQPA  +P
Sbjct:   85 GFYAGFVGAAFMFGRALTSIMWGVIADRYGRKPVIMIGTASVVLFNTLFGLSTSFWMAIFTRFLLGTMNGLLGTIKAYASEVCRAEHQALGLSLVSTAWGIGLVVGPAIGGFLAQPAEKFP 205          
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Match: A0A6N2KUS6_SALVM (MFS domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KUS6_SALVM)

HSP 1 Score: 117 bits (292), Expect = 7.070e-30
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    4 GYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGFGVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLITMVWSLGALLGSGIGGVLAQPAAHYPFTF 375
            GYYAG + SA M GR +++  WG++ADRYG +PVI        +    FG+STTF+ A   RFLLG L G++       SEVC KE++ LGMS+I+  W +G ++G  +GG LAQPA  +P  F
Sbjct:   78 GYYAGYVGSAFMFGRALTSVLWGMIADRYGRKPVIIFGTVSVVIFNTLFGLSTTFWMAISTRFLLGSLCGILGPMRAYASEVCRKEYQALGMSIISTSWGIGLVIGPALGGFLAQPAEKFPNIF 201          
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Match: A0A3S4NAX3_9MAGN (Protein ZINC INDUCED FACILITATOR-LIKE 1-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S4NAX3_9MAGN)

HSP 1 Score: 120 bits (302), Expect = 9.900e-30
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    4 GYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGFGVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLITMVWSLGALLGSGIGGVLAQPAAHYPFTF 375
            G+YAG + S+ M GR +++  WG++ADRYG +PVI I +    +    FG+ST+F+ A   RFLLG+ +GL       VSEVC +EH  LG+S+++  W +G ++G  +GG LAQPA  YP  F
Sbjct:   75 GFYAGYIGSSFMVGRAMASIFWGIIADRYGRKPVIMIGITSVIIFNTLFGLSTSFWMAISTRFLLGIFSGLFGTIMAYVSEVCREEHRALGISIVSTAWGMGLIVGPALGGFLAQPADKYPSLF 198          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6742.15490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV5_ECTSI2.840e-3762.50MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRH9_ECTSI8.400e-3652.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Q8_9PHAE9.490e-3651.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH7_ECTSI1.280e-3552.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZQ3_9PHAE2.050e-3360.42MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KX19_9PHAE7.060e-3348.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835H3K5_9MAGN1.190e-3047.58MFS domain-containing protein n=1 Tax=Coptis chine... [more]
A0A835H706_9MAGN3.060e-3047.11Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A6N2KUS6_SALVM7.070e-3045.97MFS domain-containing protein n=1 Tax=Salix vimina... [more]
A0A3S4NAX3_9MAGN9.900e-3044.35Protein ZINC INDUCED FACILITATOR-LIKE 1-like prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6742contigL-elsbetiae_contig6742:2275..3560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue4.3e-30
Seed eggNOG ortholog2880.D8LRH9
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size376
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6742.15490.1prot_L-elsbetiae_contig6742.15490.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6742 2275..3559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.797754-CDS-L-elsbetiae_contig6742:2274..24621622816746.797754-CDS-L-elsbetiae_contig6742:2274..2462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6742 2275..2462 +
1691683782.6591985-CDS-L-elsbetiae_contig6742:2274..24621691683782.6591985-CDS-L-elsbetiae_contig6742:2274..2462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6742 2275..2462 +
1622816746.8149424-CDS-L-elsbetiae_contig6742:2738..28421622816746.8149424-CDS-L-elsbetiae_contig6742:2738..2842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6742 2739..2842 +
1691683782.6718717-CDS-L-elsbetiae_contig6742:2738..28421691683782.6718717-CDS-L-elsbetiae_contig6742:2738..2842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6742 2739..2842 +
1622816746.8281949-CDS-L-elsbetiae_contig6742:3476..35591622816746.8281949-CDS-L-elsbetiae_contig6742:3476..3559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6742 3477..3559 +
1691683782.6851494-CDS-L-elsbetiae_contig6742:3476..35591691683782.6851494-CDS-L-elsbetiae_contig6742:3476..3559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6742 3477..3559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6742.15490.1

>prot_L-elsbetiae_contig6742.15490.1 ID=prot_L-elsbetiae_contig6742.15490.1|Name=mRNA_L-elsbetiae_contig6742.15490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
AGYYAGILLSALMTGRIVSAYSWGVVADRYGHRPVIFISLGFTAVLAVGF
GVSTTFFWAFFFRFLLGLLNGLIPLWPTLVSEVCGKEHEVLGMSLITMVW
SLGALLGSGIGGVLAQPAAHYPFTF
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mRNA from alignment at L-elsbetiae_contig6742:2275..3560+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6742.15490.1 ID=mRNA_L-elsbetiae_contig6742.15490.1|Name=mRNA_L-elsbetiae_contig6742.15490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1286bp|location=Sequence derived from alignment at L-elsbetiae_contig6742:2275..3560+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGGCTACTACGCCGGTATACTGCTATCGGCCCTGATGACCGGCCGAAT CGTTTCCGCATACTCCTGGGGTGTGGTTGCCGATCGGTACGGTCACCGGC CCGTGATCTTCATCTCCCTAGGATTCACGGCGGTGCTTGCGGTCGGCTTC GGGGTTTCTACAACGTTCTTCTGGGCGTTCTTCTTCAGGTACCAAGAAGC AGACGTAACAGCTCGCAGTTTCAGCGAGCGCCGGGCGGTAGGCTGCTTCT ACTTGATAGGATGGAATATGGCGGAACCATTAGCTCTGGCAGTGAGTTGT TGATAGTCGAATGTGCTCATCGCGGTTGTTTTGTGTCTTCCCATGCAAGC ATCGCTCGCAGATTAGTTGTGTGGGGTGAACTCGAGTTGAGGTGGAAAAC CTCTCGTTGTGAATTCTAGAGAGCTGAAACTGATGGGGTTTTTTCCCGGC GCCACCCGCTCAAGGTTTTTGCTCGGACTGCTTAACGGGTTGATCCCGCT GTGGCCGACTCTCGTCTCGGAGGTCTGCGGGAAGGAGCATGAGGTATTGG GTATGAGCTTGATAACAAGTGAGTCGTTGCCGTCGCCAACGAATGAAGAT GACCAACGTTTTCTTCCAGGTTGGCACGAAAGACACGTTTTTTCGAGTAC CAGTAGCATTTAATAACATCTGACGTTCTCATCCGCGCGTTCTCCAAAAT ACGAGTCTGCTGGCGTGTTGTATATCATTCGAGGTAGACTCCACTTTGTC GCCAGCGAGTCAGGGTCCCAGGAATTGTTTCTAGCGTGCTCTGTTCTTGT TTTGTCGGAGCTCTGAGACGTACGCGCCCACGCGCCCCTCTCTCTCACTC CTGCTTCACTACCCAAGCAAACCTGACCAAGGAGTCGTCAGGTTCGACCC GAGACACAAGTTAAGCTGCTTTCACGGCAGTGTGTACACCTCTCCACGAC AGACAAACACGTCTATCTGTGAAGCCCTCTACAGCACCACCCCTGCTACG CTACTGCTGTACCGTGCTTCTTTCTCCCCGACAGCCACCACTGGTCCTTT CACCCCCCCCCCCAGACTTGGTTGAGATCGCCAGAAGCATCGTAGCCTAA ATGTTCCTCCCTCCTTCTGTGTTTTCCTTTGTTCGTTTGTTTGTGTTTGT TGGCCCCGTCGAGGGTGATGCTTTCCGCGCTTCCCCATTCAAATAAACAA AGTGGTTTGGTCGCTCGGAGCGCTTCTAGGGTCTGGCATCGGAGGTGTGT TGGCCCAACCGGCGGCTCACTACCCTTTCACCTTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6742:2275..3560+

>mRNA_L-elsbetiae_contig6742.15490.1 ID=mRNA_L-elsbetiae_contig6742.15490.1|Name=mRNA_L-elsbetiae_contig6742.15490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig6742:2275..3560+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGGCTACTACGCCGGTATACTGCTATCGGCCCTGATGACCGGCCGAAT
CGTTTCCGCATACTCCTGGGGTGTGGTTGCCGATCGGTACGGTCACCGGC
CCGTGATCTTCATCTCCCTAGGATTCACGGCGGTGCTTGCGGTCGGCTTC
GGGGTTTCTACAACGTTCTTCTGGGCGTTCTTCTTCAGGCAGGCTACTAC
GCCGGTATACTGCTATCGGCCCTGATGACCGGCCGAATCGTTTCCGCATA
CTCCTGGGGTGTGGTTGCCGATCGGTACGGTCACCGGCCCGTGATCTTCA
TCTCCCTAGGATTCACGGCGGTGCTTGCGGTCGGCTTCGGGGTTTCTACA
ACGTTCTTCTGGGCGTTCTTCTTCAGGTTTTTGCTCGGACTGCTTAACGG
GTTGATCCCGCTGTGGCCGACTCTCGTCTCGGAGGTCTGCGGGAAGGAGC
ATGAGGTATTGGGTATGAGCTTGATAACAAGTTTTTGCTCGGACTGCTTA
ACGGGTTGATCCCGCTGTGGCCGACTCTCGTCTCGGAGGTCTGCGGGAAG
GAGCATGAGGTATTGGGTATGAGCTTGATAACAATGGTTTGGTCGCTCGG
AGCGCTTCTAGGGTCTGGCATCGGAGGTGTGTTGGCCCAACCGGCGGCTC
ACTACCCTTTCACCTTCTGGTTTGGTCGCTCGGAGCGCTTCTAGGGTCTG
GCATCGGAGGTGTGTTGGCCCAACCGGCGGCTCACTACCCTTTCACCTTC
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