mRNA_L-elsbetiae_contig6740.15488.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6740.15488.1
Unique NamemRNA_L-elsbetiae_contig6740.15488.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6740.15488.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.860e-13
Identity = 49/122 (40.16%), Postives = 61/122 (50.00%), Query Frame = -2 
Query:    4 GVESSGKGQGSPRQDAGAVGGVEKPL--------------------------ETAPAIKLEKADGEGEGQQEFRVAEVESNDDLE*KYGAKPDGWMHVASLVFAIFGRPAGKDEDTDLNMKM 291
            GVE +G G+G  ++ AG +G  E  L                          E A  IK E AD E   + E    + E+ DDL   YG KP+ W+H ASLVFAIFGRPAG +ED DL +KM
Sbjct:  197 GVEGAGAGEGGGKE-AGPLGHSEAALRYATAKALARVEAARNNKGEDADVVEEIAAGIKPETADEEEGKEPEETAGDAETEDDLTRLYGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKM 317
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BLAST of mRNA_L-elsbetiae_contig6740.15488.1 vs. uniprot
Match: A0A6H5K9E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 6.100e-7
Identity = 32/70 (45.71%), Postives = 40/70 (57.14%), Query Frame = -2 
Query:    4 ETAPAIKLEKADGEGEGQQEFRVAEVESNDDLE*KYGAKPDGWMHVASLVFAIFGRPAGKDEDTDLNMKM 213
            E  P+IK EK    GE  ++      E +D L      +P GW+H  SLVFA+FGRPAGK ED DL + M
Sbjct:  169 EKHPSIKQEKGVEGGEAPED-----AEDDDKL-----TRPSGWVHSYSLVFALFGRPAGKHEDVDLKVAM 228
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6740.15488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE2.860e-1340.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9E6_9PHAE6.100e-745.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6740contigL-elsbetiae_contig6740:7682..8087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size406
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6740.15488.1prot_L-elsbetiae_contig6740.15488.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6740 7692..8072 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.6470237-UTR-L-elsbetiae_contig6740:7681..76911622816746.6470237-UTR-L-elsbetiae_contig6740:7681..7691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6740 7682..7691 +
1691683782.5374222-UTR-L-elsbetiae_contig6740:7681..76911691683782.5374222-UTR-L-elsbetiae_contig6740:7681..7691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6740 7682..7691 +
1622816746.6691825-UTR-L-elsbetiae_contig6740:8072..80871622816746.6691825-UTR-L-elsbetiae_contig6740:8072..8087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6740 8073..8087 +
1691683782.5686922-UTR-L-elsbetiae_contig6740:8072..80871691683782.5686922-UTR-L-elsbetiae_contig6740:8072..8087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6740 8073..8087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.6572156-CDS-L-elsbetiae_contig6740:7691..80721622816746.6572156-CDS-L-elsbetiae_contig6740:7691..8072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6740 7692..8072 +
1691683782.5512207-CDS-L-elsbetiae_contig6740:7691..80721691683782.5512207-CDS-L-elsbetiae_contig6740:7691..8072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6740 7692..8072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6740.15488.1

>prot_L-elsbetiae_contig6740.15488.1 ID=prot_L-elsbetiae_contig6740.15488.1|Name=mRNA_L-elsbetiae_contig6740.15488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MFRSVSSSFPAGLPKIANTREATCIQPSGFAPYFYSRSSLLSTSATRNSC
CPSPSPSAFSSLMAGAVSSGFSTPPTAPASCLGEPCPLPDDSTPAPPPPS
RLASTAARALAAAYAIAAADMSLAAP*
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mRNA from alignment at L-elsbetiae_contig6740:7682..8087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6740.15488.1 ID=mRNA_L-elsbetiae_contig6740.15488.1|Name=mRNA_L-elsbetiae_contig6740.15488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=406bp|location=Sequence derived from alignment at L-elsbetiae_contig6740:7682..8087+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCATCTTCATGTTCAGGTCTGTATCCTCGTCCTTTCCAGCGGGCCTTC
CGAAGATTGCGAACACAAGGGAAGCCACGTGCATCCAGCCGTCGGGCTTC
GCGCCGTACTTTTACTCGAGATCGTCATTGCTTTCTACTTCCGCCACTCG
AAACTCCTGCTGCCCCTCCCCCTCCCCGTCAGCCTTCTCTAGCTTGATGG
CAGGTGCGGTCTCCAGCGGTTTCTCGACGCCCCCCACCGCGCCAGCGTCC
TGCCTCGGTGAACCCTGTCCCTTGCCCGATGACTCCACACCTGCACCCCC
CCCGCCGTCGCGCCTAGCTTCCACCGCCGCAAGGGCTCTGGCTGCGGCGT
ACGCCATCGCCGCAGCCGATATGTCCTTGGCCGCCCCTTGACCCCCTCCT
CCATCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6740:7682..8087+

>mRNA_L-elsbetiae_contig6740.15488.1 ID=mRNA_L-elsbetiae_contig6740.15488.1|Name=mRNA_L-elsbetiae_contig6740.15488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig6740:7682..8087+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCAGGTCTGTATCCTCGTCCTTTCCAGCGGGCCTTCCGAAGATTGC
GAACACAAGGGAAGCCACGTGCATCCAGCCGTCGGGCTTCGCGCCGTACT
TTTACTCGAGATCGTCATTGCTTTCTACTTCCGCCACTCGAAACTCCTGC
TGCCCCTCCCCCTCCCCGTCAGCCTTCTCTAGCTTGATGGCAGGTGCGGT
CTCCAGCGGTTTCTCGACGCCCCCCACCGCGCCAGCGTCCTGCCTCGGTG
AACCCTGTCCCTTGCCCGATGACTCCACACCTGCACCCCCCCCGCCGTCG
CGCCTAGCTTCCACCGCCGCAAGGGCTCTGGCTGCGGCGTACGCCATCGC
CGCAGCCGATATGTCCTTGGCCGCCCCTTGAATGTTCAGGTCTGTATCCT
CGTCCTTTCCAGCGGGCCTTCCGAAGATTGCGAACACAAGGGAAGCCACG
TGCATCCAGCCGTCGGGCTTCGCGCCGTACTTTTACTCGAGATCGTCATT
GCTTTCTACTTCCGCCACTCGAAACTCCTGCTGCCCCTCCCCCTCCCCGT
CAGCCTTCTCTAGCTTGATGGCAGGTGCGGTCTCCAGCGGTTTCTCGACG
CCCCCCACCGCGCCAGCGTCCTGCCTCGGTGAACCCTGTCCCTTGCCCGA
TGACTCCACACCTGCACCCCCCCCGCCGTCGCGCCTAGCTTCCACCGCCG
CAAGGGCTCTGGCTGCGGCGTACGCCATCGCCGCAGCCGATATGTCCTTG
GCCGCCCCTTGA
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