mRNA_L-elsbetiae_contig6739.15483.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6739.15483.1
Unique NamemRNA_L-elsbetiae_contig6739.15483.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6739.15483.1 vs. uniprot
Match: D8LES9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES9_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 5.120e-39
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 2 
Query:    2 LYGFLMIYRSTTSGVGPATGNKDTGLFTFQAAGWSLFVITLGAQVLGQTWPAGSG-PALFVRNVLGFTLFPMYLDAVAHTTPENVTPQMFSMAKAIESGI 298
            L+GF ++YRSTT GVGP+TGNKD G+F FQ   WS+F+I++GAQVLGQ   A S  PALF+RNV+GF LFP+YLD ++HTTPENVTP MFSM+K + SGI
Sbjct:  253 LFGFYILYRSTTPGVGPSTGNKDAGMFKFQVVAWSVFLISMGAQVLGQVSLAASAMPALFIRNVIGFALFPIYLDVLSHTTPENVTPDMFSMSKTVGSGI 352
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6739.15483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LES9_ECTSI5.120e-3966.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6739contigL-elsbetiae_contig6739:6828..7643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size540
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6739.15483.1prot_L-elsbetiae_contig6739.15483.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6739 6828..7627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.3535428-CDS-L-elsbetiae_contig6739:6827..70511622816746.3535428-CDS-L-elsbetiae_contig6739:6827..7051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6739 6828..7051 +
1691683782.3065674-CDS-L-elsbetiae_contig6739:6827..70511691683782.3065674-CDS-L-elsbetiae_contig6739:6827..7051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6739 6828..7051 +
1622816746.3655536-CDS-L-elsbetiae_contig6739:7311..76271622816746.3655536-CDS-L-elsbetiae_contig6739:7311..7627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6739 7312..7627 +
1691683782.3226352-CDS-L-elsbetiae_contig6739:7311..76271691683782.3226352-CDS-L-elsbetiae_contig6739:7311..7627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6739 7312..7627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.3764188-UTR-L-elsbetiae_contig6739:7627..76431622816746.3764188-UTR-L-elsbetiae_contig6739:7627..7643Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6739 7628..7643 +
1691683782.3366244-UTR-L-elsbetiae_contig6739:7627..76431691683782.3366244-UTR-L-elsbetiae_contig6739:7627..7643Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6739 7628..7643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6739.15483.1

>prot_L-elsbetiae_contig6739.15483.1 ID=prot_L-elsbetiae_contig6739.15483.1|Name=mRNA_L-elsbetiae_contig6739.15483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
PVRFPDDLPLDHLRSGPGDRQQGHGAVHVPGSRVVPFRYHPGGPGARPDV
ARGLRPRTLRQKRPRIHPLPNVPRRCGAYNSRKRDPANVQHGQGHRIGHL
SVTGVKTLPSSSSFRRRASWSKTVCPRPVASDLVRGEFLFRPTEVILGPP
PYEFPVYQAHNARTTRANPSASLQSNRVG*
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mRNA from alignment at L-elsbetiae_contig6739:6828..7643+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6739.15483.1 ID=mRNA_L-elsbetiae_contig6739.15483.1|Name=mRNA_L-elsbetiae_contig6739.15483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig6739:6828..7643+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGTACGGTTTCCTGATGATCTACCGCTCGACCACCTCCGGAGTGGGCC
CGGCGACCGGCAACAAGGACACGGGGCTGTTCACGTTCCAGGCAGCCGGG
TGGTCCCTTTTCGTTATCACCCTGGGGGCCCAGGTGCTCGGCCAGACGTG
GCCCGCGGGCTCCGGCCCCGCACTCTTCGTCAGAAACGTCCTCGGATTCA
CCCTCTTCCCAATGTACCTCGACGGTGCGTCTTGATGGGTGATGTTGTTG
CGGAGATGGTGGCACTACTGTGTATGGGGCGGCGCCCGCTGGAATGTGCG
ACAATTCGAAATGCTCTCATTGACTTCCCGTTGCGCCCTTGAAGCCAAAC
AACCTCGGCAGCATGAAAATCCGGCGCTTGTTCAAGTCGCTGCGTAAATA
CACCCTGAGTTTGCATCACATATCTTTAACATCAAACCCCACCCCCACGG
TACCGTCTCTTCCGGATTGATTTTCCCCCGACAGCTGTGGCGCATACAAC
TCCCGAAAACGTGACCCCGCAAATGTTCAGCATGGCCAAGGCCATAGAAT
CGGGCATCTAAGTGTCACAGGCGTGAAGACTTTGCCGTCGTCGTCGTCGT
TTCGCCGTCGAGCATCGTGGTCAAAGACTGTGTGCCCTCGACCGGTTGCA
AGTGACCTTGTGAGAGGGGAGTTCCTTTTTCGACCGACGGAGGTGATTTT
GGGGCCACCACCCTACGAATTTCCTGTCTATCAGGCACACAACGCGAGGA
CGACCAGAGCTAACCCGTCGGCGAGTTTACAGAGCAATCGGGTAGGCTAG
TATCACTGAGTGGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6739:6828..7643+

>mRNA_L-elsbetiae_contig6739.15483.1 ID=mRNA_L-elsbetiae_contig6739.15483.1|Name=mRNA_L-elsbetiae_contig6739.15483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig6739:6828..7643+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGTACGGTTTCCTGATGATCTACCGCTCGACCACCTCCGGAGTGGGCC
CGGCGACCGGCAACAAGGACACGGGGCTGTTCACGTTCCAGGCAGCCGGG
TGGTCCCTTTTCGTTATCACCCTGGGGGCCCAGGTGCTCGGCCAGACGTG
GCCCGCGGGCTCCGGCCCCGCACTCTTCGTCAGAAACGTCCTCGGATTCA
CCCTCTTCCCAATGTACCTCGACGCCTGTACGGTTTCCTGATGATCTACC
GCTCGACCACCTCCGGAGTGGGCCCGGCGACCGGCAACAAGGACACGGGG
CTGTTCACGTTCCAGGCAGCCGGGTGGTCCCTTTTCGTTATCACCCTGGG
GGCCCAGGTGCTCGGCCAGACGTGGCCCGCGGGCTCCGGCCCCGCACTCT
TCGTCAGAAACGTCCTCGGATTCACCCTCTTCCCAATGTACCTCGACGCT
GTGGCGCATACAACTCCCGAAAACGTGACCCCGCAAATGTTCAGCATGGC
CAAGGCCATAGAATCGGGCATCTAAGTGTCACAGGCGTGAAGACTTTGCC
GTCGTCGTCGTCGTTTCGCCGTCGAGCATCGTGGTCAAAGACTGTGTGCC
CTCGACCGGTTGCAAGTGACCTTGTGAGAGGGGAGTTCCTTTTTCGACCG
ACGGAGGTGATTTTGGGGCCACCACCCTACGAATTTCCTGTCTATCAGGC
ACACAACGCGAGGACGACCAGAGCTAACCCGTCGGCGAGTTTACAGAGCA
ATCGGGTAGGCTAGCTGTGGCGCATACAACTCCCGAAAACGTGACCCCGC
AAATGTTCAGCATGGCCAAGGCCATAGAATCGGGCATCTAAGTGTCACAG
GCGTGAAGACTTTGCCGTCGTCGTCGTCGTTTCGCCGTCGAGCATCGTGG
TCAAAGACTGTGTGCCCTCGACCGGTTGCAAGTGACCTTGTGAGAGGGGA
GTTCCTTTTTCGACCGACGGAGGTGATTTTGGGGCCACCACCCTACGAAT
TTCCTGTCTATCAGGCACACAACGCGAGGACGACCAGAGCTAACCCGTCG
GCGAGTTTACAGAGCAATCGGGTAGGCTAG
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