mRNA_L-elsbetiae_contig6736.15480.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6736.15480.1
Unique NamemRNA_L-elsbetiae_contig6736.15480.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6736.15480.1 vs. uniprot
Match: D7FJA8_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA8_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 2.080e-38
Identity = 123/186 (66.13%), Postives = 139/186 (74.73%), Query Frame = -2 
Query:  232 VATLAQNLGIVKDLVFAGADIEVGYPADLNRTPLHLASAYGMPAVAQHLLRAGARVNVTDALGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGVLRASPRNASAWIAFVSLVAAARCGQTEVADVLIKAGVPPVQEGLVRYGPLSAAAVAGNRRVRMFLL 789
            +AT+ Q+LGIVK LV  GAD+ VGY  DLNR PLHLA AYGM  VAQ+LL+AG++VN+TD  GC         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      RHGVLRASP   SAW+AF +L AAAR G  +VADVLI+AGVPP QEGL+R GPLS AA +    V   +L
Sbjct:    1 MATIRQDLGIVKALVSGGADLSVGYLQDLNRCPLHLAVAYGMTPVAQYLLKAGSKVNLTDDHGCTPLYSASFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVKEFIRHGVLRASPPGTSAWVAFTTLCAAARSGHPDVADVLIEAGVPPAQEGLLRMGPLSCAASSKKLEVARRIL 186
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6736.15480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJA8_ECTSI2.080e-3866.13Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6736contigL-elsbetiae_contig6736:4287..5268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size982
Cds size540
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.1006353-UTR-L-elsbetiae_contig6736:4286..47281622816746.1006353-UTR-L-elsbetiae_contig6736:4286..4728Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6736 4287..4728 +
1691683782.1105092-UTR-L-elsbetiae_contig6736:4286..47281691683782.1105092-UTR-L-elsbetiae_contig6736:4286..4728Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6736 4287..4728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.1127-CDS-L-elsbetiae_contig6736:4728..52681622816746.1127-CDS-L-elsbetiae_contig6736:4728..5268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6736 4729..5268 +
1691683782.1244419-CDS-L-elsbetiae_contig6736:4728..52681691683782.1244419-CDS-L-elsbetiae_contig6736:4728..5268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6736 4729..5268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6736.15480.1prot_L-elsbetiae_contig6736.15480.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6736 4729..5268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6736.15480.1

>prot_L-elsbetiae_contig6736.15480.1 ID=prot_L-elsbetiae_contig6736.15480.1|Name=mRNA_L-elsbetiae_contig6736.15480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
MSSFTTATCPSWQLASSALLPSPFVAVMSAPDESSSVAHCTCPTYEAEYS
GVQPRASVTFTLAPARSRCWATAGIPYAEARCNGVLFRSAGYPTSMSAPA
KTKSFTMPKFCAKVATWMACLSMSVSLRRAPASVRAVTASLRSAKAADPR
AVAFLLVSKASILAPARRRTFITLVRPVL*
back to top

mRNA from alignment at L-elsbetiae_contig6736:4287..5268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6736.15480.1 ID=mRNA_L-elsbetiae_contig6736.15480.1|Name=mRNA_L-elsbetiae_contig6736.15480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=982bp|location=Sequence derived from alignment at L-elsbetiae_contig6736:4287..5268+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCATCAGCATCGTTGAACATTGGGTGCGAAACGTGCTTGTGTGGTAT
GTATCGGAATGGTCGGCCGGCTGGATTGCATGACGTGCTACATACGGCCG
CGGTAGAGGGTGGACGAAGGACTAGAACAGACACGCTTTCAGGAACTCAC
GCGGGTTAACGATGTCGCGGTCCCTTCCAAAGTAACCAAAAACTCCCCCT
TTAACACGGGCAGACAACGTGTGACGAAAGACAAGAGAAACATTCGCACC
CGACGATTTCCCGCCACCGCTGCGGCCGACAGAGGGCCGTACCGGACCAG
CCCTTCCTGCACGGGCGGCACCCCGGCCTTGATCAACACATCCGCCACCT
CGGTCTGCCCACACCTCGCCGCCGCAACCAGCGACACGAACGCGATCCAC
GCGGACGCGTTCCGGGGGGACGCCCGCAGAACCCCGTGCCGGATGAGCTC
TTTCACGACGGCAACGTGCCCCTCTTGGCAGCTGGCCTCGAGCGCGCTGT
TGCCGTCGCCGTTCGTGGCCGTCATGTCTGCCCCGGACGAAAGCAGCTCG
GTCGCGCACTGCACGTGCCCGACGTACGAGGCCGAGTACAGCGGTGTGCA
GCCGAGGGCGTCCGTCACGTTCACTCTCGCTCCGGCACGCAGCAGGTGCT
GGGCCACCGCAGGCATTCCGTACGCGGAGGCGAGGTGCAACGGGGTTCTG
TTCAGGTCAGCGGGGTATCCAACCTCGATGTCAGCCCCCGCGAAGACCAA
GTCTTTCACGATGCCCAAGTTTTGCGCCAAGGTGGCCACGTGGATGGCCT
GTTTGTCGATGTCGGTGTCCTTGAGGCGAGCGCCGGCTTCGGTGAGAGCC
GTGACTGCGTCACTGCGTAGCGCGAAGGCGGCCGACCCGAGGGCCGTCGC
TTTCCTCTTGGTGTCCAAGGCGTCTATCCTGGCGCCCGCCCGCAGAAGAA
CTTTTATCACGCTCGTCCGCCCTGTGTTGTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6736:4287..5268+

>mRNA_L-elsbetiae_contig6736.15480.1 ID=mRNA_L-elsbetiae_contig6736.15480.1|Name=mRNA_L-elsbetiae_contig6736.15480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig6736:4287..5268+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTCTTTCACGACGGCAACGTGCCCCTCTTGGCAGCTGGCCTCGAG
CGCGCTGTTGCCGTCGCCGTTCGTGGCCGTCATGTCTGCCCCGGACGAAA
GCAGCTCGGTCGCGCACTGCACGTGCCCGACGTACGAGGCCGAGTACAGC
GGTGTGCAGCCGAGGGCGTCCGTCACGTTCACTCTCGCTCCGGCACGCAG
CAGGTGCTGGGCCACCGCAGGCATTCCGTACGCGGAGGCGAGGTGCAACG
GGGTTCTGTTCAGGTCAGCGGGGTATCCAACCTCGATGTCAGCCCCCGCG
AAGACCAAGTCTTTCACGATGCCCAAGTTTTGCGCCAAGGTGGCCACGTG
GATGGCCTGTTTGTCGATGTCGGTGTCCTTGAGGCGAGCGCCGGCTTCGG
TGAGAGCCGTGACTGCGTCACTGCGTAGCGCGAAGGCGGCCGACCCGAGG
GCCGTCGCTTTCCTCTTGGTGTCCAAGGCGTCTATCCTGGCGCCCGCCCG
CAGAAGAACTTTTATCACGCTCGTCCGCCCTGTGTTGTAAATGAGCTCTT
TCACGACGGCAACGTGCCCCTCTTGGCAGCTGGCCTCGAGCGCGCTGTTG
CCGTCGCCGTTCGTGGCCGTCATGTCTGCCCCGGACGAAAGCAGCTCGGT
CGCGCACTGCACGTGCCCGACGTACGAGGCCGAGTACAGCGGTGTGCAGC
CGAGGGCGTCCGTCACGTTCACTCTCGCTCCGGCACGCAGCAGGTGCTGG
GCCACCGCAGGCATTCCGTACGCGGAGGCGAGGTGCAACGGGGTTCTGTT
CAGGTCAGCGGGGTATCCAACCTCGATGTCAGCCCCCGCGAAGACCAAGT
CTTTCACGATGCCCAAGTTTTGCGCCAAGGTGGCCACGTGGATGGCCTGT
TTGTCGATGTCGGTGTCCTTGAGGCGAGCGCCGGCTTCGGTGAGAGCCGT
GACTGCGTCACTGCGTAGCGCGAAGGCGGCCGACCCGAGGGCCGTCGCTT
TCCTCTTGGTGTCCAAGGCGTCTATCCTGGCGCCCGCCCGCAGAAGAACT
TTTATCACGCTCGTCCGCCCTGTGTTGTAA
back to top