mRNA_L-elsbetiae_contig6733.15477.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6733.15477.1
Unique NamemRNA_L-elsbetiae_contig6733.15477.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Match: A0A6H5J9L9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L9_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.170e-38
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:   10 GKEPSPKVSKRKGGAKARKXXXXXXXXXXXGVEGITLTEKGGAG-GKDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRF 297
            GKEPSPKVSKRKGGAKARKXXXXXXXXXXXGVEGITL EKGGAG   DDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR+
Sbjct:    3 GKEPSPKVSKRKGGAKARKXXXXXXXXXXXGVEGITLKEKGGAGVDGDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRY 99
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BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Match: A0A835ZA40_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA40_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.240e-11
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  100 GVEGITLTEKGGAGGKDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRF 297
            GV+G+T+ ++      D     R A+G+L SE RARDIKIQ FSLS  SK LVED+ +E+NYG+R+
Sbjct:   33 GVDGLTVEDRTDGATADHSESGRMATGVLVSEKRARDIKIQGFSLSLFSKPLVEDTILELNYGQRY 98
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BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Match: A0A8H7ZNL0_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZNL0_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 6.780e-10
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:  103 VEGITLTEKGGAGGKDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRF 297
            V G+ L    G     DG   R+  G+L S+ ++RDIKI+SF+LSFH ++L++D+TIE+N+GRR+
Sbjct:   86 VSGLQL----GDANSKDGVADRSCVGVLTSDPKSRDIKIESFTLSFHGRLLIQDATIELNFGRRY 146
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BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Match: A0A0E9NAQ1_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NAQ1_SAICN)

HSP 1 Score: 63.5 bits (153), Expect = 1.330e-9
Identity = 28/66 (42.42%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:  100 GVEGITLTEKGGAGGKDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRF 297
            G++G+++ +       D+    R+A G+L S+ R+RDIKI+ +SLSFH ++L+E++TIE+NYG+R+
Sbjct:   44 GIDGMSIED-------DNSNFDRSAVGVLTSDQRSRDIKIEQYSLSFHGRVLIENATIELNYGQRY 102
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BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Match: UPI000866977D (uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=UPI000866977D)

HSP 1 Score: 63.5 bits (153), Expect = 1.400e-9
Identity = 28/66 (42.42%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:  100 GVEGITLTEKGGAGGKDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRF 297
            G++G+++ +       D+    R+A G+L S+ R+RDIKI+ +SLSFH ++L+E++TIE+NYG+R+
Sbjct:  975 GIDGMSIED-------DNSNFDRSAVGVLTSDQRSRDIKIEQYSLSFHGRVLIENATIELNYGQRY 1033
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BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Match: A0A397U9W9_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U9W9_9GLOM)

HSP 1 Score: 63.2 bits (152), Expect = 1.810e-9
Identity = 24/44 (54.55%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  166 RNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRF 297
            R A+G+L S++RA+D+KI+ +SLSFH ++L+E++TIE+N+GRR+
Sbjct:   61 RTANGVLTSQSRAKDVKIEQYSLSFHGRVLIENATIELNFGRRY 104
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BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Match: B6JW30_SCHJY (Ribosome biogenesis ATPase (Fragment) n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6JW30_SCHJY)

HSP 1 Score: 63.2 bits (152), Expect = 1.820e-9
Identity = 27/50 (54.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:  148 DDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRF 297
            DD    R+ASG+L S+A +RDIKI+S++LSFH ++L+E++TIE+N+G+R+
Sbjct:   57 DDPMFERSASGVLVSQAMSRDIKIESYTLSFHGRLLIENATIELNHGQRY 106
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BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Match: A0A8H4A6H7_GIGMA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4A6H7_GIGMA)

HSP 1 Score: 62.8 bits (151), Expect = 2.400e-9
Identity = 24/44 (54.55%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  166 RNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRF 297
            R A+G+L S+ RA+D+KI+ +SLSFH ++L+E++TIE+N+GRR+
Sbjct:   61 RTANGVLTSQTRAKDVKIEQYSLSFHGRVLIENATIELNFGRRY 104
[Close]
BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Match: A0A137PEX8_CONC2 (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PEX8_CONC2)

HSP 1 Score: 61.6 bits (148), Expect = 6.290e-9
Identity = 25/44 (56.82%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  166 RNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRF 297
            R+A+G+LAS+  +RDIKI+SF+LSFH ++L+ ++TIE+N+GRR+
Sbjct:   42 RSATGVLASQESSRDIKIESFTLSFHGRLLISNATIELNFGRRY 85
[Close]
BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Match: A0A2N1NWU9_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=10 Tax=Eukaryota TaxID=2759 RepID=A0A2N1NWU9_9GLOM)

HSP 1 Score: 61.2 bits (147), Expect = 8.610e-9
Identity = 25/44 (56.82%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  166 RNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRF 297
            R A+G+LAS+ R+RDIKI+ +SLSF+ ++LV+++TIE+N+GRR+
Sbjct:   59 RTATGVLASQPRSRDIKIEQYSLSFYGRVLVDNATIELNFGRRY 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6733.15477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9L9_9PHAE1.170e-3894.85ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835ZA40_9STRA1.240e-1151.52P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8H7ZNL0_9FUNG6.780e-1046.15P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0E9NAQ1_SAICN1.330e-942.42Uncharacterized protein n=1 Tax=Saitoella complica... [more]
UPI000866977D1.400e-942.42uncharacterized protein n=1 Tax=Saitoella complica... [more]
A0A397U9W9_9GLOM1.810e-954.55P-loop containing nucleoside triphosphate hydrolas... [more]
B6JW30_SCHJY1.820e-954.00Ribosome biogenesis ATPase (Fragment) n=1 Tax=Schi... [more]
A0A8H4A6H7_GIGMA2.400e-954.55P-loop containing nucleoside triphosphate hydrolas... [more]
A0A137PEX8_CONC26.290e-956.82p-loop containing nucleoside triphosphate hydrolas... [more]
A0A2N1NWU9_9GLOM8.610e-956.82P-loop containing nucleoside triphosphate hydrolas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6733contigL-elsbetiae_contig6733:3995..4294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.3
Seed ortholog evalue3.7e-08
Seed eggNOG ortholog4897.EEB05581
KEGG koko:K06185
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000056,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008144,GO:0008150,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030554,GO:0031503,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0044085,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.Ribosome biogenesis ATPase
EggNOG OGs38D7Z@33154,3MBPV@451866,3NUDQ@4751,3QM35@4890,COG0488@1,KOG0927@2759
COG Functional cat.S
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_001300.1
Exons1
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.8678467-CDS-L-elsbetiae_contig6733:3994..42941622816745.8678467-CDS-L-elsbetiae_contig6733:3994..4294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6733 3995..4294 +
1691683781.9564583-CDS-L-elsbetiae_contig6733:3994..42941691683781.9564583-CDS-L-elsbetiae_contig6733:3994..4294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6733 3995..4294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6733.15477.1prot_L-elsbetiae_contig6733.15477.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6733 3995..4294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6733.15477.1

>prot_L-elsbetiae_contig6733.15477.1 ID=prot_L-elsbetiae_contig6733.15477.1|Name=mRNA_L-elsbetiae_contig6733.15477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MAGGKEPSPKVSKRKGGAKARKAAKAAEAALAAGVEGITLTEKGGAGGKD
DGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRFV
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mRNA from alignment at L-elsbetiae_contig6733:3995..4294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6733.15477.1 ID=mRNA_L-elsbetiae_contig6733.15477.1|Name=mRNA_L-elsbetiae_contig6733.15477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig6733:3995..4294+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGGCGGAAAAGAGCCGAGCCCGAAGGTGTCCAAGCGCAAGGGGGG
AGCCAAGGCGAGAAAAGCAGCTAAGGCGGCAGAGGCGGCCCTCGCCGCCG
GAGTGGAGGGGATCACGCTAACGGAGAAGGGCGGGGCGGGGGGGAAGGAT
GACGGGCCCCAGGCCCGTAACGCCTCCGGCATCCTGGCGAGCGAGGCGAG
AGCGAGAGACATCAAGATCCAGTCCTTCTCTCTCAGCTTTCACTCCAAGA
TCCTCGTGGAAGACTCGACCATCGAGATGAACTACGGGCGAAGGTTCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6733:3995..4294+

>mRNA_L-elsbetiae_contig6733.15477.1 ID=mRNA_L-elsbetiae_contig6733.15477.1|Name=mRNA_L-elsbetiae_contig6733.15477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig6733:3995..4294+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGGCGGAAAAGAGCCGAGCCCGAAGGTGTCCAAGCGCAAGGGGGG
AGCCAAGGCGAGAAAAGCAGCTAAGGCGGCAGAGGCGGCCCTCGCCGCCG
GAGTGGAGGGGATCACGCTAACGGAGAAGGGCGGGGCGGGGGGGAAGGAT
GACGGGCCCCAGGCCCGTAACGCCTCCGGCATCCTGGCGAGCGAGGCGAG
AGCGAGAGACATCAAGATCCAGTCCTTCTCTCTCAGCTTTCACTCCAAGA
TCCTCGTGGAAGACTCGACCATCGAGATGAACTACGGGCGAAGGTTCGTC
ATGGCTGGCGGAAAAGAGCCGAGCCCGAAGGTGTCCAAGCGCAAGGGGGG
AGCCAAGGCGAGAAAAGCAGCTAAGGCGGCAGAGGCGGCCCTCGCCGCCG
GAGTGGAGGGGATCACGCTAACGGAGAAGGGCGGGGCGGGGGGGAAGGAT
GACGGGCCCCAGGCCCGTAACGCCTCCGGCATCCTGGCGAGCGAGGCGAG
AGCGAGAGACATCAAGATCCAGTCCTTCTCTCTCAGCTTTCACTCCAAGA
TCCTCGTGGAAGACTCGACCATCGAGATGAACTACGGGCGAAGGTTCGTC
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