mRNA_L-elsbetiae_contig6732.15475.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6732.15475.1
Unique NamemRNA_L-elsbetiae_contig6732.15475.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6732.15475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6732contigL-elsbetiae_contig6732:6347..6912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size566
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6732.15475.1prot_L-elsbetiae_contig6732.15475.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6732 6366..6734 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.7364514-UTR-L-elsbetiae_contig6732:6346..63651622816745.7364514-UTR-L-elsbetiae_contig6732:6346..6365Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6732 6347..6365 +
1691683781.8576074-UTR-L-elsbetiae_contig6732:6346..63651691683781.8576074-UTR-L-elsbetiae_contig6732:6346..6365Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6732 6347..6365 +
1622816745.7560158-UTR-L-elsbetiae_contig6732:6734..69121622816745.7560158-UTR-L-elsbetiae_contig6732:6734..6912Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6732 6735..6912 +
1691683781.8957996-UTR-L-elsbetiae_contig6732:6734..69121691683781.8957996-UTR-L-elsbetiae_contig6732:6734..6912Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6732 6735..6912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.7465873-CDS-L-elsbetiae_contig6732:6365..67341622816745.7465873-CDS-L-elsbetiae_contig6732:6365..6734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6732 6366..6734 +
1691683781.8815594-CDS-L-elsbetiae_contig6732:6365..67341691683781.8815594-CDS-L-elsbetiae_contig6732:6365..6734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6732 6366..6734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6732.15475.1

>prot_L-elsbetiae_contig6732.15475.1 ID=prot_L-elsbetiae_contig6732.15475.1|Name=mRNA_L-elsbetiae_contig6732.15475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MCSVTWDRWNTLVDLIAPCSVRDARGGVTKIKIFLSRPQGISGGEFAFTF
ACTDDVGVPEGGVFRSNLYISAVPPESHINTCAFSCHERDGFTSFAPPST
YSRLYVGSRRASEVLAETTPVQ*
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mRNA from alignment at L-elsbetiae_contig6732:6347..6912+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6732.15475.1 ID=mRNA_L-elsbetiae_contig6732.15475.1|Name=mRNA_L-elsbetiae_contig6732.15475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=566bp|location=Sequence derived from alignment at L-elsbetiae_contig6732:6347..6912+ (Laminarionema elsbetiae ELsaHSoW15)
CGTAGATAGATATTTTTCCATGTGTTCAGTTACGTGGGATAGATGGAATA
CACTTGTGGACCTTATTGCCCCCTGCTCGGTACGAGATGCCAGAGGGGGA
GTGACAAAAATAAAGATATTCCTCTCGCGCCCACAGGGCATCTCCGGGGG
GGAGTTTGCATTTACTTTTGCATGTACTGATGATGTCGGTGTGCCCGAAG
GGGGCGTCTTCCGGTCGAATCTATACATCAGTGCCGTTCCTCCCGAAAGC
CACATAAATACTTGTGCATTTTCATGCCACGAGAGAGACGGATTTACATC
GTTCGCTCCCCCCTCTACATACTCTCGATTGTATGTAGGATCGAGAAGAG
CCTCGGAGGTTTTAGCAGAAACGACCCCCGTACAGTAAGTATCGCAAGTA
TTTTAGGACAAAGGTGATTCCATTGTACATATAACTCCGCGCGGTGCAAT
CAGCGACTGGGTAGATTCAGCCACAACGCGCTCGCATAAACCAAGGCCAG
AGTTAGCAGCAAAGATCTCAACAAAGAAACGTCCCTCAACAATCGCACAA
TAGTCCTCGACAACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6732:6347..6912+

>mRNA_L-elsbetiae_contig6732.15475.1 ID=mRNA_L-elsbetiae_contig6732.15475.1|Name=mRNA_L-elsbetiae_contig6732.15475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig6732:6347..6912+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTTCAGTTACGTGGGATAGATGGAATACACTTGTGGACCTTATTGC
CCCCTGCTCGGTACGAGATGCCAGAGGGGGAGTGACAAAAATAAAGATAT
TCCTCTCGCGCCCACAGGGCATCTCCGGGGGGGAGTTTGCATTTACTTTT
GCATGTACTGATGATGTCGGTGTGCCCGAAGGGGGCGTCTTCCGGTCGAA
TCTATACATCAGTGCCGTTCCTCCCGAAAGCCACATAAATACTTGTGCAT
TTTCATGCCACGAGAGAGACGGATTTACATCGTTCGCTCCCCCCTCTACA
TACTCTCGATTGTATGTAGGATCGAGAAGAGCCTCGGAGGTTTTAGCAGA
AACGACCCCCGTACAGTAAATGTGTTCAGTTACGTGGGATAGATGGAATA
CACTTGTGGACCTTATTGCCCCCTGCTCGGTACGAGATGCCAGAGGGGGA
GTGACAAAAATAAAGATATTCCTCTCGCGCCCACAGGGCATCTCCGGGGG
GGAGTTTGCATTTACTTTTGCATGTACTGATGATGTCGGTGTGCCCGAAG
GGGGCGTCTTCCGGTCGAATCTATACATCAGTGCCGTTCCTCCCGAAAGC
CACATAAATACTTGTGCATTTTCATGCCACGAGAGAGACGGATTTACATC
GTTCGCTCCCCCCTCTACATACTCTCGATTGTATGTAGGATCGAGAAGAG
CCTCGGAGGTTTTAGCAGAAACGACCCCCGTACAGTAA
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