mRNA_L-elsbetiae_contig6731.15474.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6731.15474.1
Unique NamemRNA_L-elsbetiae_contig6731.15474.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6731.15474.1 vs. uniprot
Match: D7FTV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV1_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.540e-13
Identity = 53/158 (33.54%), Postives = 85/158 (53.80%), Query Frame = 3 
Query:    6 FVLKMTAQNLDGTISITTSVPCAAGSSMDICMVQYDVNLPEPTEPLEPSGG----------ASRRLTERSSARQDHTSSHDARDSAPSSRRNLQSTVEVDVMVLYD-EAALERGFVTTPEQMETLIADELPFSTEAAENSRI-NLRFNLVHAGQLPYT 443
            F+LK+ ++N DG+ SI TSVPC+AGSS ++CMV+ ++   + +E ++ +             SR L E+  +   +T     R     S R+LQ+T  +DV+++Y  EAA  RG      Q+ T I + +    +A  NS I  L + LV   +LPY+
Sbjct:   66 FLLKLVSRNADGSTSIVTSVPCSAGSSSELCMVELEMFFHDESEAVDTTQSXXXXXXXKDQGSRMLKEQRVS-MTYTEEESLRSQGLPSDRSLQATTVIDVLIVYSPEAAYARGIAEA--QLLTRIVEGMVTLNQAITNSGIAGLEYRLVQVAELPYS 220
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BLAST of mRNA_L-elsbetiae_contig6731.15474.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.080e-12
Identity = 56/158 (35.44%), Postives = 82/158 (51.90%), Query Frame = 3 
Query:    6 FVLKMTAQNLDGTISITTSVPCAAGSSMDICMVQYDVNLPEPTEPLEPSGG----------ASRRLTERSSARQDHTSSHDARDSAPSSRRNLQSTVEVDVMVLYD-EAALERGFVTTPEQMETLIADELPFSTEAAENSRI-NLRFNLVHAGQLPYT 443
            F+LK+ ++N DG+ SI TSVPC+AGSS +ICMV+ ++   + +E  +               SR L ER  +   +T     R    SS R LQ T  +DV+++Y  EAA  RG      Q+ T I + +    +A  NS I  L + LV   +LPY+
Sbjct:   77 FLLKLVSRNADGSTSIFTSVPCSAGSSNEICMVELEMFFHDESETEDTXXXXXXXXXXKDQGSRMLKERRVSTT-YTEEGSLRSQGMSSDRRLQGTTVIDVLIVYSPEAAYARGIAEA--QLLTRIVEGMVTLNQAITNSGIAGLEYRLVQVAELPYS 231
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BLAST of mRNA_L-elsbetiae_contig6731.15474.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.350e-11
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 3 
Query:    3 TFVLKMTAQNLDGTISITTSVPCAAGSSMDICMVQYDVNLPEPTEPLEPSGGAS----------RRLTERSSARQDHTSSHDARDSAPSSRRNLQSTVEVDVMVLYD-EAALERGFVTTPEQMETLIADELPFSTEAAENSRI-NLRFNLVHAGQLPYT 443
            TF+LK+ ++N DG+ SI TSVPC+AGSS +ICMV+      + ++ ++ S  +S          R L ER  +              PS R +LQ T  +DV++ Y  EAA   G   +  Q+ T I + +    +A  NS I +L + LVH  +LPY+
Sbjct:  254 TFLLKLVSRNSDGSTSIATSVPCSAGSSSEICMVELQKFFYDESDAVDTSQSSSSSSTSKYQGSRMLKERRVSTTFMEEGSRWSQGIPSDR-SLQGTTVIDVLIFYSPEAASSEGI--SDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYS 409
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6731.15474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTV1_ECTSI3.540e-1333.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRC1_9PHAE2.080e-1235.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE1.350e-1134.59LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6731contigL-elsbetiae_contig6731:7810..10716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size471
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6731.15474.1prot_L-elsbetiae_contig6731.15474.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6731 7810..10699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.6423783-CDS-L-elsbetiae_contig6731:7809..78481622816745.6423783-CDS-L-elsbetiae_contig6731:7809..7848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6731 7810..7848 -
1691683781.7962554-CDS-L-elsbetiae_contig6731:7809..78481691683781.7962554-CDS-L-elsbetiae_contig6731:7809..7848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6731 7810..7848 -
1622816745.652733-CDS-L-elsbetiae_contig6731:9254..94161622816745.652733-CDS-L-elsbetiae_contig6731:9254..9416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6731 9255..9416 -
1691683781.8074377-CDS-L-elsbetiae_contig6731:9254..94161691683781.8074377-CDS-L-elsbetiae_contig6731:9254..9416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6731 9255..9416 -
1622816745.6653538-CDS-L-elsbetiae_contig6731:9836..99291622816745.6653538-CDS-L-elsbetiae_contig6731:9836..9929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6731 9837..9929 -
1691683781.8167186-CDS-L-elsbetiae_contig6731:9836..99291691683781.8167186-CDS-L-elsbetiae_contig6731:9836..9929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6731 9837..9929 -
1622816745.6776173-CDS-L-elsbetiae_contig6731:10217..102861622816745.6776173-CDS-L-elsbetiae_contig6731:10217..10286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6731 10218..10286 -
1691683781.8259697-CDS-L-elsbetiae_contig6731:10217..102861691683781.8259697-CDS-L-elsbetiae_contig6731:10217..10286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6731 10218..10286 -
1622816745.6935856-CDS-L-elsbetiae_contig6731:10609..106991622816745.6935856-CDS-L-elsbetiae_contig6731:10609..10699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6731 10610..10699 -
1691683781.836333-CDS-L-elsbetiae_contig6731:10609..106991691683781.836333-CDS-L-elsbetiae_contig6731:10609..10699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6731 10610..10699 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.7046237-UTR-L-elsbetiae_contig6731:10699..107161622816745.7046237-UTR-L-elsbetiae_contig6731:10699..10716Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6731 10700..10716 -
1691683781.846766-UTR-L-elsbetiae_contig6731:10699..107161691683781.846766-UTR-L-elsbetiae_contig6731:10699..10716Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6731 10700..10716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6731.15474.1

>prot_L-elsbetiae_contig6731.15474.1 ID=prot_L-elsbetiae_contig6731.15474.1|Name=mRNA_L-elsbetiae_contig6731.15474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MTAQNLDGTISITTSVPCAAGSSMDICMVQYDVNLPEPTEPLEPSGGASR
RLTERSSARQDHTSSHDARDSAPSSRRNLQSTVEVDVMVLYDEAALERGF
VTTPEQMETLIADELPFSTEAAENSRINLRFNLVHAGQLPYTVGSQNDNT
E
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mRNA from alignment at L-elsbetiae_contig6731:7810..10716-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6731.15474.1 ID=mRNA_L-elsbetiae_contig6731.15474.1|Name=mRNA_L-elsbetiae_contig6731.15474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2907bp|location=Sequence derived from alignment at L-elsbetiae_contig6731:7810..10716- (Laminarionema elsbetiae ELsaHSoW15)
AGACCTTCGTGCTCAAGATGACTGCTCAAAATCTCGACGGCACCATCTCG
ATCACGACGTCAGTGCCATGCGCTGCCGGCTCAAGCATGGATATCTGTAT
GGTCCAGGTAACCCTTGCCTGGCCTGACAAGAAAGCGACAACACGATAGA
TCTCCGCTTCTTGTAACTAGCAACGAAGTCGATTGTAGGTGCGCTGTTAC
ACGACAATGTTGTCTGTACGATTGGTAGCAAACAGCGGCGTTGATCACGT
AAACGCTGGCTGGGCGATGAGAGCGACAACCACGGTAGATCCCGCTGATA
TTTCACGGTTGCTGATGCAAGATGAGATCTATGTTCAATGTTCCGCATTC
CGGCCGAACGACGCGCGCATTACCTCCCGACTCTTCAACCTCATAAATTA
CCTTTCGGCTTCAACCTCTGCGCTTTCCAGTACGACGTCAACCTGCCCGA
ACCTACGGAGCCTTTGGAGCCTTCCGGGGGCGCTAGCCGTCGTCTGACCG
TAAGTCATGCCACCCACATGCACCACCGGGCTGTACTTTGTCAGTGCCTT
CAGTAGCAACAGTCCTACATACGGGATTCCAGTCTACAGTATGACCCGCG
TCCGTGATCGATATCGTATTGGTCTTGAGAAAGGCTTTTCCCTAGATCTG
TCATTGCTCATCGTCGTCGAGTATGGGCAGCAGGTCAGGGTCGACCCATG
CGCCTTCGTTAGTTCGTCTTGAGAAAAAGCCACCGATAGCCGTAACATCC
CCTCTCCGTCCTGCCGCTTGTTGTTCTCATGCGCCAGGAACGGAGCTCCG
CCCGCCAGGACCACACCAGCAGCCACGATGCCAGGGATTCGGCACCTTCG
TCTCGCCGAAACTTGCAGTCCACCGTCGAGGTACGGAATTTTCTTCAGTA
GTGGCAACAGATCACCCGTGATCCGCTCGACAAAATGTCGGAAGGTTTTT
CACCTCTCACACACCCCATACCCTCCCCAGCAGAGCCTTGCACAAAAGTG
CCAGCGAACGGTGCACTGTTGTGCCAAGCTACCTACGAACGGCGCTTAGG
AGCGCCCCCGTCGCTCCTTCCCACTCTACCAAAAAAACGGGCTGGGTGCT
GACGACGCCAATCCATTCTTGGGAAGAGAAGCCCCGTCGCCGCCCCTGCC
CACCCTACGAAAAAAACGGCTGGATGCTGACAGCGCCAACCCAGCCCATC
ATTTCCCGCCGCACTACGTACTGTTTCATTTACGCGGCTCCTCGTCGCCG
GCACGCTGTCTGTGTGCGGGCGTGCCTTAATTAACCAAAACAACAAGCAG
GTGGATGTCATGGTCCTGTACGACGAAGCGGCTTTGGAGAGAGGTTTCGT
GACTACGCCCGAGCAGATGGAGACTCTGATCGCCGACGAGCTGCCCTTCT
CCACCGAGGCGGCGGAGAACTCGCGCATCAACCTCCGGTTCAATCTCGTG
CACGCCGGCCAGGCAAGTAATTAATGGTCCCGGGCGCTGCGTCTTGGGAA
GCAAATCACGAGTGCATATATATACATTTTTTTTAAATAAAACAAAGAAT
CAAAGATGGAACCTAACCCATACTAGAACAAAGACTCGATATGGGGTTCA
AACGGTATTCCATACAGAGACGTAATATTTGGCAAAGCGAGCAGAAAAAA
CAACCTAAATATCAGAAGAATTCAACATCTCCCCTGCCAAGATTTAGATT
TTTTTGTTTTATCCTCCCATTATTGACATATTCGTCGTCTGCCCCACTGG
CCCCCATAATCCACTACGACTAGCTAGACGACCCAACCGGGATCACACAT
ATAAACCTGTGATTTATTTTTCGGTTTTTACCACCCGGTGGTTCAGGCAA
AATGAATGTCCCGGCCGTGTTCTTCGTCGGAGAGTGTTATTTGTCCTTCG
TGTTAATTGCTCTTTTTTTATTTCGAATGGCGTTTAGTGTTCACTTTGCG
AGCGGACCCCCGAAGGGAAGAGGGAGGATATTAATATCGACCTGGCAGAG
CCACGCTCCCGCAGACATATTTCCGCGGCGCCAAATGGGCCGCGTCTCTT
GCCTCTCTGCTCAAAACACAGCCCCTTTTCCCCCTCCGAAACGACAACCG
AGGATTTTCCATCCTCCGGTGAAGGGGAACTTATATTACTGCAAAGCTGT
TGGCTCTGTGATGGCCAAGTCCCCAAATGGTATCGTACCATTTCCTACAC
CAGCTAGAACAACATTTCTGGCTACTGATATCGGCTTTTTGCCCTTCCCC
AACCTTGGAAAGAAAAGGGGTGGGTGGGCGGGAAAAATACTCTACTTTTT
TTGTCGGCAGCACCTGAAAATCGACCAGCTTCTGGAATCCTTTCTACGTG
TCCAGCTAGCTCCGGTCCCCTGCACTCCGCTCTCTAGCGCTCTAACACTC
TCTGAGTGGAACGGCGGTTGCCTTCCGTATAGCGATCAAAGATGTCTCTG
TCACGCCGGCGGGGGGCGCCCACGTCGTCGTACGTGACACGTCTCCGCGT
GCCCCCGAGCATCGGTACATAGAGCTCTTTCTTTCAGAACCCAATATAAA
CAAATGTTCCACGCCACGGTTAATTCCATTCGATAAACGGTCTGCTTAGT
GTTGTACCGCTCCACGGCTTTAACAGAAAATGGCCCTTTTTGAGACCAAA
GAAAACCCACTCTCGTCCCACCGGGACCTCTCCACCTTTTGAGCGAAGGT
AATGTCGTCTCGAAACGTACCCTATGGAGGTCCCGAAATCTCTGGGAGGG
GGGTGTGAAGTGTTCTTCGTGCTGACTCCATTCGCTCGTGTATTCGTTCG
CCCACCGTGGTGCGGAACAACCTCTAGCGTTTCATGCCTCTCTTCCGTCG
TACCTGTGGTTACCGCAGCTGCCGTACACCGTAGGGTCCCAAAACGACAA
CACCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6731:7810..10716-

>mRNA_L-elsbetiae_contig6731.15474.1 ID=mRNA_L-elsbetiae_contig6731.15474.1|Name=mRNA_L-elsbetiae_contig6731.15474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig6731:7810..10716- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTGCTCAAAATCTCGACGGCACCATCTCGATCACGACGTCAGTGCC
ATGCGCTGCCGGCTCAAGCATGGATATCTGTATGGTCCAGATGACTGCTC
AAAATCTCGACGGCACCATCTCGATCACGACGTCAGTGCCATGCGCTGCC
GGCTCAAGCATGGATATCTGTATGGTCCAGTACGACGTCAACCTGCCCGA
ACCTACGGAGCCTTTGGAGCCTTCCGGGGGCGCTAGCCGTCGTCTGACCT
ACGACGTCAACCTGCCCGAACCTACGGAGCCTTTGGAGCCTTCCGGGGGC
GCTAGCCGTCGTCTGACCGAACGGAGCTCCGCCCGCCAGGACCACACCAG
CAGCCACGATGCCAGGGATTCGGCACCTTCGTCTCGCCGAAACTTGCAGT
CCACCGTCGAGGAACGGAGCTCCGCCCGCCAGGACCACACCAGCAGCCAC
GATGCCAGGGATTCGGCACCTTCGTCTCGCCGAAACTTGCAGTCCACCGT
CGAGGTGGATGTCATGGTCCTGTACGACGAAGCGGCTTTGGAGAGAGGTT
TCGTGACTACGCCCGAGCAGATGGAGACTCTGATCGCCGACGAGCTGCCC
TTCTCCACCGAGGCGGCGGAGAACTCGCGCATCAACCTCCGGTTCAATCT
CGTGCACGCCGGCCAGGTGGATGTCATGGTCCTGTACGACGAAGCGGCTT
TGGAGAGAGGTTTCGTGACTACGCCCGAGCAGATGGAGACTCTGATCGCC
GACGAGCTGCCCTTCTCCACCGAGGCGGCGGAGAACTCGCGCATCAACCT
CCGGTTCAATCTCGTGCACGCCGGCCAGCTGCCGTACACCGTAGGGTCCC
AAAACGACAACACCGAGCTGCCGTACACCGTAGGGTCCCAAAACGACAAC
ACCGAG
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