mRNA_L-elsbetiae_contig6729.15471.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6729.15471.1
Unique NamemRNA_L-elsbetiae_contig6729.15471.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6729.15471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6729contigL-elsbetiae_contig6729:5951..6267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size319
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.3959148-CDS-L-elsbetiae_contig6729:5950..62651622816745.3959148-CDS-L-elsbetiae_contig6729:5950..6265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6729 5951..6265 +
1691683781.6210096-CDS-L-elsbetiae_contig6729:5950..62651691683781.6210096-CDS-L-elsbetiae_contig6729:5950..6265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6729 5951..6265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6729.15471.1prot_L-elsbetiae_contig6729.15471.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6729 5951..6265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6729.15471.1

>prot_L-elsbetiae_contig6729.15471.1 ID=prot_L-elsbetiae_contig6729.15471.1|Name=mRNA_L-elsbetiae_contig6729.15471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
DRRPSRRDDLVLARGEHGSTVHTPTATVKRTVRAAGARSRGAGTGASSRR
KRPRRRRSSVLKGLQPVVCESWLTHEENHAESWAKTEERRLRRKSSLTPY
LRNPL
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mRNA from alignment at L-elsbetiae_contig6729:5951..6267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6729.15471.1 ID=mRNA_L-elsbetiae_contig6729.15471.1|Name=mRNA_L-elsbetiae_contig6729.15471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=317bp|location=Sequence derived from alignment at L-elsbetiae_contig6729:5951..6267+ (Laminarionema elsbetiae ELsaHSoW15)
GATAGGCGCCCGTCTCGTCGAGACGACCTTGTTCTCGCGCGAGGGGAACA
TGGCTCTACTGTGCACACGCCTACTGCTACGGTAAAGCGCACGGTGAGAG
CTGCTGGGGCGCGTTCTCGGGGGGCGGGGACAGGGGCCAGTTCGAGGAGG
AAACGCCCAAGGCGCAGACGATCAAGCGTTCTCAAAGGCCTGCAGCCCGT
GGTGTGCGAGTCCTGGCTAACACACGAGGAAAATCACGCGGAAAGTTGGG
CCAAGACGGAGGAGAGAAGGCTTCGTAGAAAGAGTTCGCTCACTCCGTAT
CTGCGCAACCCTCTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6729:5951..6267+

>mRNA_L-elsbetiae_contig6729.15471.1 ID=mRNA_L-elsbetiae_contig6729.15471.1|Name=mRNA_L-elsbetiae_contig6729.15471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig6729:5951..6267+ (Laminarionema elsbetiae ELsaHSoW15)
GATAGGCGCCCGTCTCGTCGAGACGACCTTGTTCTCGCGCGAGGGGAACA
TGGCTCTACTGTGCACACGCCTACTGCTACGGTAAAGCGCACGGTGAGAG
CTGCTGGGGCGCGTTCTCGGGGGGCGGGGACAGGGGCCAGTTCGAGGAGG
AAACGCCCAAGGCGCAGACGATCAAGCGTTCTCAAAGGCCTGCAGCCCGT
GGTGTGCGAGTCCTGGCTAACACACGAGGAAAATCACGCGGAAAGTTGGG
CCAAGACGGAGGAGAGAAGGCTTCGTAGAAAGAGTTCGCTCACTCCGTAT
CTGCGCAACCCTCTGGATAGGCGCCCGTCTCGTCGAGACGACCTTGTTCT
CGCGCGAGGGGAACATGGCTCTACTGTGCACACGCCTACTGCTACGGTAA
AGCGCACGGTGAGAGCTGCTGGGGCGCGTTCTCGGGGGGCGGGGACAGGG
GCCAGTTCGAGGAGGAAACGCCCAAGGCGCAGACGATCAAGCGTTCTCAA
AGGCCTGCAGCCCGTGGTGTGCGAGTCCTGGCTAACACACGAGGAAAATC
ACGCGGAAAGTTGGGCCAAGACGGAGGAGAGAAGGCTTCGTAGAAAGAGT
TCGCTCACTCCGTATCTGCGCAACCCTCTG
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