mRNA_L-elsbetiae_contig6722.15466.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6722.15466.1
Unique NamemRNA_L-elsbetiae_contig6722.15466.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6722.15466.1 vs. uniprot
Match: D7FNS9_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS9_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 6.470e-37
Identity = 92/205 (44.88%), Postives = 117/205 (57.07%), Query Frame = 3 
Query: 1494 VYGTLSHPSPDEKAFRNFADQGVGCLGTKKVTRIELGQYVGKPPPKQLVSATGWSFLNTGHAAGFVAFGNSSTR-AEASFNLSC-GHMRHLDLEYLLSYEGMGAVSVAV---------TSNEIGPTMVIDGLWESRASVPWFRTVPIPGDSKS-----VLVTLSIMSAENEEDKKPSLS---NSDMNKPSLRGDRKFKLISMQCC 2051
            V   L +PS DE+    F + G+GCL +     +ELG Y+G PPP +LVS  GWS L    A G   FGNSS+  A A F+L C G  + LD+EYL+SYEGMGAV V+V          +N     +V+DGLW S  S+P F T+ IP    S     V VTL I+S E E    P L     +D  + S+RGDRKFKL+S+QCC
Sbjct:  195 VKDPLPNPSVDERELERFKN-GLGCLESTNAFELELGGYLGTPPPSELVSTNGWSILQLAGAPGLTGFGNSSSNPAVAVFDLPCVGEKQILDVEYLVSYEGMGAVKVSVGQVDAHGSSAANNSTSVVVVDGLWGSHVSIPAFETIDIPDKGTSAPESMVRVTLEILSVEGERLYTPHLFAGVGNDEKQTSVRGDRKFKLLSLQCC 398
[Close]
BLAST of mRNA_L-elsbetiae_contig6722.15466.1 vs. uniprot
Match: D8LJK3_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 2.430e-36
Identity = 92/210 (43.81%), Postives = 121/210 (57.62%), Query Frame = 3 
Query: 1488 IQVYGTLSHPSPDEKAFRNFADQGVGCLGTKKVTRIELGQYVGKPPPKQLVSATGWSFLNTGHAAGFVAFGNSSTR-AEASFNLSC-GHMRHLDLEYLLSYEGMGAVSVAVTSNEIGPT--------------MVIDGLWESRASVPWFRTVPIP--GDSKSVLVTLSIMSAENEEDKKPS----LSNSDMNKPSLRGDRKFKLISMQCC 2051
            ++VYG L +PSP EK  + F   G+GCL   + + +ELG Y+  PPP++LVS TGWS L     AG   F   +T  A A+F L C G +  LD+EYL+SY GMGAV V +   E GPT              +++DGLW+S ASV  F T+PIP  G   +V V+L I+SAE E     S        +  +  +RGDRKFKLIS+QCC
Sbjct:  301 LEVYGPLPNPSPSEKELQRFKG-GMGCLANPRSSVLELGSYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKYATDPAVATFELVCDGGVGLLDIEYLVSYAGMGAVMVEI---EAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGGGNVRVSLRILSAEEEHSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 506
[Close]
BLAST of mRNA_L-elsbetiae_contig6722.15466.1 vs. uniprot
Match: A0A6H5JFN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN1_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.180e-34
Identity = 87/210 (41.43%), Postives = 117/210 (55.71%), Query Frame = 3 
Query: 1488 IQVYGTLSHPSPDEKAFRNFADQGVGCLGTKKVTRIELGQYVGKPPPKQLVSATGWSFLNTGHAAGFVAFGNSSTR-AEASFNLSC-GHMRHLDLEYLLSYEGMGAVSVAVTSNEIGPT--------------MVIDGLWESRASVPWFRTVPIP--GDSKSVLVTLSIMSAENEEDKKPS----LSNSDMNKPSLRGDRKFKLISMQCC 2051
            ++VYG   +PSP E+  + F   G+GCL   + + +ELG Y+  P P++LVS TGWS L     AG   F   +T  A A+F L C G    LD+EYL+SY GMG+V V +   E GPT              +++DGLW+S ASV  F T+PIP  G   +V V+  I+SAE E     S        +  +  +RGDRKFKLIS+QCC
Sbjct:  151 LEVYGPSPNPSPSERELQRFKG-GMGCLANPRSSILELGNYLDAPTPEELVSVTGWSVLKLSGEAGLTGFRKGATDPAVATFELVCDGGAGLLDMEYLVSYVGMGSVMVEI---EAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGGGNVRVSFRILSAEEERSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 356
[Close]
BLAST of mRNA_L-elsbetiae_contig6722.15466.1 vs. uniprot
Match: A0A6H5JTT5_9PHAE (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.210e-31
Identity = 83/206 (40.29%), Postives = 121/206 (58.74%), Query Frame = 3 
Query: 1488 IQVYGTLSHPSPDEKAFRNFADQGVGCLGTKKVTRIELGQYVGKPPPKQLVSATGWSFLNTGHAAGFVAFGNSSTRAEASFNLSC-GHMRHLDLEYLLSYEGMGAVSVAVTS-----------NEIGPTMVIDGLWESRASVPWFRTVPIP--GDSKSVLVTLSIMSAENEEDKKPSLS---NSDMNKPS-LRGDRKFKLISMQCC 2051
            ++VYG  S+PSP E+  + F   G+GCL   +   ++L +Y+  PPP++LVS +G S        GF    +++  A A+F+L C G +  LD+EYL+SYEGMG+  V + +           N    T+++DGLW+S ASVP F T+PIP  G  + V V++ IMSAE E     S       D+++   +RGDRKFKLIS+QCC
Sbjct:  329 LEVYGPSSNPSPSERELQRFKS-GMGCLANPRSAILQLDKYLDAPPPEELVSVSGSSVSGDAGPTGFRK--DATDPAVATFDLVCDGGVGLLDMEYLVSYEGMGSAMVEIEAGPTAEDVQDEGNSSTSTVIVDGLWDSHASVPSFETIPIPDAGGGRHVRVSIRIMSAEGERSSSSSRLFDFKGDLDREKEVRGDRKFKLISLQCC 531
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6722.15466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNS9_ECTSI6.470e-3744.88SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
D8LJK3_ECTSI2.430e-3643.81SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JFN1_9PHAE3.180e-3441.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT5_9PHAE2.210e-3140.29SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6722contigL-elsbetiae_contig6722:7068..9374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2307
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6722.15466.1prot_L-elsbetiae_contig6722.15466.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6722 8816..9121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816744.8480072-UTR-L-elsbetiae_contig6722:7067..88151622816744.8480072-UTR-L-elsbetiae_contig6722:7067..8815Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6722 7068..8815 +
1691683781.3318117-UTR-L-elsbetiae_contig6722:7067..88151691683781.3318117-UTR-L-elsbetiae_contig6722:7067..8815Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6722 7068..8815 +
1622816744.8705766-UTR-L-elsbetiae_contig6722:9121..93741622816744.8705766-UTR-L-elsbetiae_contig6722:9121..9374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6722 9122..9374 +
1691683781.3538296-UTR-L-elsbetiae_contig6722:9121..93741691683781.3538296-UTR-L-elsbetiae_contig6722:9121..9374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6722 9122..9374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816744.8592818-CDS-L-elsbetiae_contig6722:8815..91211622816744.8592818-CDS-L-elsbetiae_contig6722:8815..9121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6722 8816..9121 +
1691683781.3452108-CDS-L-elsbetiae_contig6722:8815..91211691683781.3452108-CDS-L-elsbetiae_contig6722:8815..9121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6722 8816..9121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6722.15466.1

>prot_L-elsbetiae_contig6722.15466.1 ID=prot_L-elsbetiae_contig6722.15466.1|Name=mRNA_L-elsbetiae_contig6722.15466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MRHLDLEYLLSYEGMGAVSVAVTSNEIGPTMVIDGLWESRASVPWFRTVP
IPGDSKSVLVTLSIMSAENEEDKKPSLSNSDMNKPSLRGDRKFKLISMQC
C*
back to top

mRNA from alignment at L-elsbetiae_contig6722:7068..9374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6722.15466.1 ID=mRNA_L-elsbetiae_contig6722.15466.1|Name=mRNA_L-elsbetiae_contig6722.15466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2307bp|location=Sequence derived from alignment at L-elsbetiae_contig6722:7068..9374+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTCAATTGTCGGGTATTGTACTATATGTATGTATGTACATGTGTACGT
ACTGCATAGACTACATGGCACGTCTGCCCTCGTTTGGTGTGTGGGATCTA
GACTAGATACATATGTAGTATCTAGATCTAAACAAGGTGTACTACAACAT
GTGTACATACTGTAGTCTATATCTCGACTATCTAACCACCAGCAGTCTGT
ATGTACAACAATATGTATGCACATCATAGATAGATGTACAGCCATCCTCC
CTTACATGCAAGTGTATGCACTTCGGCGGACTTTCAGTGCCCTCTGCCTT
CCTCCACCCATCCTATATCTTGTTTCAATCTTACAAAAACTTATACATTA
CCTTTCTTTGTGAGGGTACACACAGCAGCAGTAGTAATAGTACATAGATA
GTAGTAGTAGTGGCGTTCGTTCGTTGTTGTAGTCGATCGAGTCAAAAACG
TATAGAGTACCTTTGTGAGGGTACACACAGCAGCAGTAGTACTTCGTATA
ATATCTAGTAGTGGCGTTCATTGTAGTCGATCGAGTGGTGGTTTGTTTCT
ATCTATCCTGGGGACTTGTATTGTGTACAGTGATATATCCCCCCTCTGGT
AAAACAACGTGCGGTTGCCTACTACATAAATAATTGATGCATGTCCTCTC
TCCCGAATCCCTCCCTTCTTTCTCGCATCTTGCCTCGCGCCCACACTCTC
CCTGTCGGTTTTCCGTCTTTGCAGCACAGTAGCATCTGTAAGCATTATTT
CCAAAAAAATATTGGGGATTTTAGACAAGGCTGGGCTACCCCAGGCGATT
TATTTATTACTACATATATATAACTTCTTACCTCACTTTCCGAATAAAAG
TAGGGTAAAACGACCGTGCGGGTATTAGGGCCACCTGAAGGTAGTGGTCG
ATTGCGCATGTTCTAACGCGTTGTAAGGCCTGATATTTGGCTCGCGCAGT
ATTGATGGTACTTCAAAGCCTTGCAGAAAAATAATGAAACAATCATCGCA
TAATCGGGAACAAAAACGAGGAATCTTCGCGTTTGTTTCGCCTGTTTTTG
GGCAACAAACGGCATGTTTTGGGCGCGCCGGTGCAAATAAAAAAAAATCC
TTGTTTTTTTGCGGTGTCGCCGCAATCATCTCTAGAGTAGACGGCATGCA
AAGTTTTGTTGCCATGAGGGTTCATTGCACCCCAATCTCAGATGATCCAG
ACGCTATTTTTGTCCATTTTTTCGGCAAAAATCCAGAGAAGAGATAAAAA
GAGAAAAAAATATATAAACAAAAATGGGTAAATAAAAGTAGGCACCACTG
AAGCTCGTATTGGCTTCCGCGTAGCAACGGTGCCCGGTTTCTTGGCGGCA
GCCGCCACACATGACCGAATAATAAGCAGAAACCCGTACATCACTAACAA
CAGAGTTTGACGTGGTGAGTTGCATGTAATGCGGTTCGTAAATCTCCAAT
TCATTGTGGTTCTTGAACCCCGTGCTTTTCGTTTTCTATCCAGGTCTATG
GGACCTTGTCCCATCCCAGCCCCGACGAGAAAGCTTTTCGGAACTTCGCC
GACCAGGGTGTGGGCTGCCTCGGGACGAAGAAAGTAACCCGAATCGAACT
AGGGCAGTACGTCGGGAAGCCTCCGCCCAAGCAGCTGGTCTCCGCAACCG
GGTGGTCATTCCTTAACACCGGCCACGCCGCTGGATTTGTTGCATTTGGC
AACTCTTCTACTCGTGCTGAAGCCTCTTTTAACCTCTCATGTGGTCATAT
GCGGCATTTGGACCTGGAGTACCTGTTGAGTTATGAGGGCATGGGCGCGG
TTTCAGTTGCCGTTACTTCGAATGAGATTGGACCGACCATGGTCATCGAC
GGGCTGTGGGAATCACGTGCATCAGTTCCATGGTTCCGTACCGTACCAAT
TCCGGGAGATTCCAAGTCCGTACTGGTGACGCTTAGCATTATGTCGGCAG
AAAACGAAGAAGACAAGAAACCATCGCTTTCTAACAGTGACATGAACAAG
CCGAGTCTTCGTGGCGACCGCAAGTTCAAGCTAATCAGTATGCAGTGCTG
CTAACGTCACACGTATTCGCTTGGACGTTTAGGATTTTATGCATTTCTAT
GCATTTTATTTTGTAGCATGATGTGATGTTTGTTGCTGCTGGGGCCTGGC
CTGTGTTAGCACGTTGTTCGTTGTGGATTCTTGTCGGGGGCGCCTCTTGT
GCACGCACAATCAGAAGTAATCCGTTCACATATTTTCGAATTGTCAATTA
CGACCAGGCCAAGGGCCATTTTGAGGGTGTGCACAGCAGCATCACCGTTA
TAGGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6722:7068..9374+

>mRNA_L-elsbetiae_contig6722.15466.1 ID=mRNA_L-elsbetiae_contig6722.15466.1|Name=mRNA_L-elsbetiae_contig6722.15466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig6722:7068..9374+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCATTTGGACCTGGAGTACCTGTTGAGTTATGAGGGCATGGGCGC
GGTTTCAGTTGCCGTTACTTCGAATGAGATTGGACCGACCATGGTCATCG
ACGGGCTGTGGGAATCACGTGCATCAGTTCCATGGTTCCGTACCGTACCA
ATTCCGGGAGATTCCAAGTCCGTACTGGTGACGCTTAGCATTATGTCGGC
AGAAAACGAAGAAGACAAGAAACCATCGCTTTCTAACAGTGACATGAACA
AGCCGAGTCTTCGTGGCGACCGCAAGTTCAAGCTAATCAGTATGCAGTGC
TGCTAAATGCGGCATTTGGACCTGGAGTACCTGTTGAGTTATGAGGGCAT
GGGCGCGGTTTCAGTTGCCGTTACTTCGAATGAGATTGGACCGACCATGG
TCATCGACGGGCTGTGGGAATCACGTGCATCAGTTCCATGGTTCCGTACC
GTACCAATTCCGGGAGATTCCAAGTCCGTACTGGTGACGCTTAGCATTAT
GTCGGCAGAAAACGAAGAAGACAAGAAACCATCGCTTTCTAACAGTGACA
TGAACAAGCCGAGTCTTCGTGGCGACCGCAAGTTCAAGCTAATCAGTATG
CAGTGCTGCTAA
back to top