|
Homology
BLAST of mRNA_L-elsbetiae_contig6720.15464.1 vs. uniprot
Match: D8LJ46_ECTSI (Similar to deoxynucleotidyltransferase, terminal, interacting protein 2, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ46_ECTSI) HSP 1 Score: 374 bits (961), Expect = 4.020e-118 Identity = 382/543 (70.35%), Postives = 412/543 (75.87%), Query Frame = 2
Query: 56 MSETSKPRSSSIDLGAEVVVKRDGELHGQRGSVVDRRQGWYRVQLDGSEDVKSFRWAELNEIQASSLPRLPAAGSQG-RPQSPSXXXXXXXXXXXXXXAIL-----LPSTPGPAAG-LPPRHPSTTAVAAAVVGEKTNLVARPAAKGRASPAHGDANSSPASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDAMIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------GNIEV-----------ARKRPRVSGVAPRALDSGLAGPKYLNYGGTQKGENLTASVPSGVVDGGKAAKLMAGSALYSGRDRAMLLERTKAPKDDTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDTKRFYKASDKVSKFMQQIGTVKEGPAEYFSSRMTKKERKKTLVDELLVADDAFRAYSKSQYSSIQSRKRAGGKAAYNEQKRKRSGGTKWKP 1552
M + K RSSSIDLGA VVVKRDGEL GQRGSVVD++QGWY+VQL G + +KSFRWAE+ E++A +PQ+P XXXXXXXXXXXXXX S+ G AAG LPPRHPST A AA+ EKT + R +G P+ DA +P+S+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+ V AR+RPR+SGVAPR LDSGLA PKYL Y GT KG++LTASV SGVVDGGKAAKLMAGS+LYSGRDRAMLLER+KAPKDDTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVD KRFYKASDKVSKFMQ IGTVKEGP+EYFSSRMT KERKKTLVDELLVADDAFRAYSK+QY SIQSRKRAGGKAAYN+QKRKR GG +WKP
Sbjct: 1 MEDKPKARSSSIDLGATVVVKRDGELLGQRGSVVDKKQGWYKVQLPGVDGIKSFRWAEIKEMEAPPPXXXXXXXXXXIKPQAPXXXXXXXXXXXXXXXXXXGVAGDKSSSRGKAAGALPPRHPST-ASAASAADEKTVTMRRRLTRGH--PSENDAGVTPSSSTPEVSDQPDQERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHNASSQARASGGSATXXXXXXXXXXASSGASGDSRVPSGKGVTKSQAARRRPRLSGVAPRTLDSGLASPKYLQYSGTAKGKSLTASVSSGVVDGGKAAKLMAGSSLYSGRDRAMLLERSKAPKDDTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDPKRFYKASDKVSKFMQ-IGTVKEGPSEYFSSRMTNKERKKTLVDELLVADDAFRAYSKNQYGSIQSRKRAGGKAAYNDQKRKRKGGMQWKP 539
BLAST of mRNA_L-elsbetiae_contig6720.15464.1 vs. uniprot
Match: A0A8H7PEE1_MORIS (Fcf2 domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PEE1_MORIS) HSP 1 Score: 128 bits (321), Expect = 3.290e-29 Identity = 82/187 (43.85%), Postives = 112/187 (59.89%), Query Frame = 2
Query: 992 LDSGLAGPKYLNYGGTQKGENLTASVPSGVVDGGKAAKLMAGSALYSGRDRAMLLERTKAPKD--DTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDTKRFYKASDKVSKFMQQIGTVKEGPAEYFSSRMTKKERKKTLVDELLVADDAFRAYSKSQYSSIQSRKRAGGKAAYNEQKRKRSGGTKW 1546
LDSGL+ L +T + D ++K A S L + A RT+ K+ TAGKGWF+M + E+TPE+KRDLQVIR+RN +D KR YK D+ Q+GT+ EGP E+FSSRMTK+ERK+T+VDELL AD+ R Y K ++ +Q R ++GGK + + K KR+ KW
Sbjct: 104 LDSGLSVKDQLYIVSENDRAKMTQELAVLDDDSAGSSKSKAFSVLTPSKTDAPNKSRTEKQKERETTAGKGWFDMPKTEITPEIKRDLQVIRLRNVLDRKRHYKKGDQKDPTYFQMGTIIEGPTEFFSSRMTKRERKQTIVDELL-ADEEARGYYKRRFMEVQERTQSGGKKHFKKLKAKRA--KKW 287
BLAST of mRNA_L-elsbetiae_contig6720.15464.1 vs. uniprot
Match: A0A8H7PNK3_9FUNG (Fcf2 domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PNK3_9FUNG) HSP 1 Score: 128 bits (321), Expect = 5.530e-29 Identity = 70/124 (56.45%), Postives = 90/124 (72.58%), Query Frame = 2
Query: 1175 KDDTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDTKRFYKASDKVSKFMQQIGTVKEGPAEYFSSRMTKKERKKTLVDELLVADDAFRAYSKSQYSSIQSRKRAGGKAAYNEQKRKRSGGTKW 1546
K+ TAGKGWF+M + E+TPE+KRDLQVIR+RN +D KR YK SD Q+GTV EGP E+FSSR+TK+ERK+T+VDELL ADD R Y K ++ +QSR + GGK + + K KR+ KW
Sbjct: 190 KEATAGKGWFDMPKTEITPEIKRDLQVIRLRNVLDRKRHYKKSDSKDPTYFQVGTVIEGPTEFFSSRLTKRERKQTIVDELL-ADDEARGYYKRRFLDVQSRTQNGGKKHFKKVKGKRA--QKW 310
BLAST of mRNA_L-elsbetiae_contig6720.15464.1 vs. uniprot
Match: A0A397U2L9_9GLOM (Fcf2 pre-rRNA processing-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U2L9_9GLOM) HSP 1 Score: 121 bits (304), Expect = 1.410e-28 Identity = 68/126 (53.97%), Postives = 94/126 (74.60%), Query Frame = 2
Query: 1157 ERTKAPKDDTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDTKRFYKA--SDKVSKFMQQIGTVKEGPAEYFSSRMTKKERKKTLVDELLVADDAFRAYSKSQYSSIQSRKRAGGKAAYNEQKRKR 1528
ER K ++ TAG GWF+M + E+TPE+KRDLQ+I+MRN +D KRFYK S ++ K+ Q IGTV EGP E++SSR+T+KERKKT+VDEL+ AD+ + Y K ++ IQ K++GGK Y + K+KR
Sbjct: 14 ERQKL-REATAGPGWFDMPKPELTPEIKRDLQIIKMRNVLDPKRFYKKDNSKELPKYFQ-IGTVIEGPTEFYSSRLTRKERKKTIVDELM-ADEEAKKYYKRKFLEIQKTKQSGGKKHYKQLKKKR 136
BLAST of mRNA_L-elsbetiae_contig6720.15464.1 vs. uniprot
Match: A0A6H5JBF4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF4_9PHAE) HSP 1 Score: 120 bits (301), Expect = 8.980e-27 Identity = 80/162 (49.38%), Postives = 102/162 (62.96%), Query Frame = 2
Query: 56 MSETSKPRSSSIDLGAEVVVKRDGELHGQRGSVVDRRQGWYRVQLDGSEDVKSFRWAELNEIQASSLPRLPAA-GSQGRPQSPSXXXXXXXXXXXXXXAILLP----STPGPAAG-LPPRHPSTTAVAAAVVGEKTNLVARPAAKGRASPAHGDANSSPASA 523
M++ SK RSSSIDLGA VVVKRDGEL GQRGSVVD+ QGWY+VQL G + +KSFRWAE+ E++A P+A S +PQ+PS + + S+ G AAG PPRHPST A AA+V EKT + R +GR P+ DA +P+S+
Sbjct: 1 MADKSKARSSSIDLGATVVVKRDGELLGQRGSVVDKNQGWYKVQLPGVDGIKSFRWAEIKEMEAPPPSPPPSAIPSPIKPQAPSPFKKNSSVSTAAAAVVGVAGDKSSSRGKAAGGFPPRHPST-ASAASVADEKTVTMRRRLTRGR--PSENDAGVTPSSS 159
BLAST of mRNA_L-elsbetiae_contig6720.15464.1 vs. uniprot
Match: A0A2I1FW28_9GLOM (Fcf2-domain-containing protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1FW28_9GLOM) HSP 1 Score: 116 bits (291), Expect = 4.570e-26 Identity = 61/120 (50.83%), Postives = 90/120 (75.00%), Query Frame = 2
Query: 1175 KDDTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDTKRFYKASDK--VSKFMQQIGTVKEGPAEYFSSRMTKKERKKTLVDELLVADDAFRAYSKSQYSSIQSRKRAGGKAAYNEQKRKR 1528
++ TAG GWF+M++ E+TPE+KRDLQ+I++RN +D KRFYK D + K+ + IGT+KEGPAE++SSR+ +KER++T+ DELL + + R Y K ++S IQ K++GGK Y + K KR
Sbjct: 81 RESTAGPGWFDMKKPEITPEIKRDLQIIKLRNVLDPKRFYKKDDSKGLPKYFE-IGTIKEGPAEFYSSRIPRKERRQTIADELLTNEQSKR-YFKRKFSEIQEIKQSGGKKYYKQLKSKR 198
BLAST of mRNA_L-elsbetiae_contig6720.15464.1 vs. uniprot
Match: A0A397TD17_9GLOM (Fcf2 pre-rRNA processing-domain-containing protein (Fragment) n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TD17_9GLOM) HSP 1 Score: 113 bits (283), Expect = 5.220e-26 Identity = 60/123 (48.78%), Postives = 90/123 (73.17%), Query Frame = 2
Query: 1184 TAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDTKRFYKASDK--VSKFMQQIGTVKEGPAEYFSSRMTKKERKKTLVDELLVADDAFRAYSKSQYSSIQSRKRAGGKAAYNEQKRKRSGGTKW 1546
TAG GWF+M++ E+TPE+KRDLQ+I+ RN +D KRFYK D + K+ + +GT+KEGP +++SSR+ +KERK+T+ DEL+ AD+ ++Y K ++S IQ K++GGK + + K KR KW
Sbjct: 1 TAGPGWFDMKKPEITPEIKRDLQIIKSRNVLDPKRFYKKDDSKGLPKYFE-VGTIKEGPTDFYSSRIPRKERKQTIADELM-ADEQSKSYFKRKFSEIQEVKQSGGKKYFKQLKTKRK--PKW 119
BLAST of mRNA_L-elsbetiae_contig6720.15464.1 vs. uniprot
Match: A0A2Z6RWF8_9GLOM (Fcf2 domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RWF8_9GLOM) HSP 1 Score: 117 bits (293), Expect = 4.640e-25 Identity = 65/137 (47.45%), Postives = 97/137 (70.80%), Query Frame = 2
Query: 1130 SGRDRAMLLERTKAPK--DDTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDTKRFYKASDK--VSKFMQQIGTVKEGPAEYFSSRMTKKERKKTLVDELLVADDAFRAYSKSQYSSIQSRKRAGGKAAYNEQKRKR 1528
+G+D L + + K + T G GWF+M++ E+TPE+KRDLQ+I++RN +D KRFYK D + K+ + IGT+KEGPAE++SSR+ +KERK+T+ DELL A++ R Y K +++ IQ K++GGK Y + K KR
Sbjct: 193 NGQDSYAKLSKKEKQKIRESTTGPGWFDMKKPEITPEIKRDLQIIKLRNVLDPKRFYKKDDSKGLPKYFE-IGTIKEGPAEFYSSRIPRKERKQTIADELL-ANEQSRRYFKRKFTEIQEIKQSGGKKYYKQLKAKR 327
BLAST of mRNA_L-elsbetiae_contig6720.15464.1 vs. uniprot
Match: A0A397I151_9GLOM (Fcf2 domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397I151_9GLOM) HSP 1 Score: 114 bits (285), Expect = 8.340e-25 Identity = 61/127 (48.03%), Postives = 90/127 (70.87%), Query Frame = 2
Query: 1175 KDDTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDTKRFYKA--SDKVSKFMQQIGTVKEGPAEYFSSRMTKKERKKTLVDELLVADDAFRAYSKSQYSSIQSRKRAGGKAAYNEQKRKRSGGTKWK 1549
++ T G GWF+M + E+TPE+KRDLQVI++RN +D KRFYK S + K+ Q +GT+ EGP ++++SR+ +KERKKT+VDEL+ ADD + Y K ++ IQ K++GGK Y + KR+ +WK
Sbjct: 125 RESTTGPGWFDMPKPELTPEIKRDLQVIKLRNVLDPKRFYKKDNSKNIPKYFQ-VGTIIEGPTDFYASRLPRKERKKTIVDELM-ADDKAKKYYKRKFLEIQETKQSGGKKYYKNLRNKRN--PEWK 247
BLAST of mRNA_L-elsbetiae_contig6720.15464.1 vs. uniprot
Match: A0A015K4I0_RHIIW (Fcf2p n=9 Tax=Rhizophagus TaxID=1129544 RepID=A0A015K4I0_RHIIW) HSP 1 Score: 116 bits (291), Expect = 8.660e-25 Identity = 61/120 (50.83%), Postives = 90/120 (75.00%), Query Frame = 2
Query: 1175 KDDTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDTKRFYKASDK--VSKFMQQIGTVKEGPAEYFSSRMTKKERKKTLVDELLVADDAFRAYSKSQYSSIQSRKRAGGKAAYNEQKRKR 1528
++ TAG GWF+M++ E+TPE+KRDLQ+I++RN +D KRFYK D + K+ + IGT+KEGPAE++SSR+ +KER++T+ DELL + + R Y K ++S IQ K++GGK Y + K KR
Sbjct: 211 RESTAGPGWFDMKKPEITPEIKRDLQIIKLRNVLDPKRFYKKDDSKGLPKYFE-IGTIKEGPAEFYSSRIPRKERRQTIADELLTNEQSKR-YFKRKFSEIQEIKQSGGKKYYKQLKAKR 328
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 382.1 |
Seed ortholog evalue | 4.1e-103 |
Seed eggNOG ortholog | 2880.D8LJ46 |
Preferred name | DNTTIP2 |
KEGG rclass | RC00055,RC00061,RC00064,RC00090,RC00523 |
KEGG ko | ko:K01867,ko:K03942,ko:K11205,ko:K20294 |
KEGG TC | 3.D.1.6 |
KEGG Reaction | R00894,R03664,R10993,R11945 |
KEGG Pathway | ko00190,ko00270,ko00480,ko00970,ko01100,ko04216,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map00270,map00480,map00970,map01100,map04216,map04714,map04723,map04932,map05010,map05012,map05016 |
KEGG Module | M00118,M00143,M00359,M00360 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0031974,GO:0031981,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363 |
EggNOG free text desc. | transcription, DNA-templated |
EggNOG OGs | KOG3100@1,KOG3100@2759 |
EC | 1.6.5.3,1.6.99.3,6.1.1.2 |
COG Functional cat. | C |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko04131 |
Exons | 8 |
Model size | 2190 |
Cds size | 1554 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816744.6742792-UTR-L-elsbetiae_contig6720:3828..4463 | 1622816744.6742792-UTR-L-elsbetiae_contig6720:3828..4463 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6720 3829..4463 - |
1691683781.2013557-UTR-L-elsbetiae_contig6720:3828..4463 | 1691683781.2013557-UTR-L-elsbetiae_contig6720:3828..4463 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6720 3829..4463 - |
1622816744.782451-UTR-L-elsbetiae_contig6720:9903..9904 | 1622816744.782451-UTR-L-elsbetiae_contig6720:9903..9904 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6720 9904..9904 - |
1691683781.3084078-UTR-L-elsbetiae_contig6720:9903..9904 | 1691683781.3084078-UTR-L-elsbetiae_contig6720:9903..9904 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6720 9904..9904 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816744.687069-CDS-L-elsbetiae_contig6720:4463..4578 | 1622816744.687069-CDS-L-elsbetiae_contig6720:4463..4578 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 4464..4578 - |
1691683781.2171721-CDS-L-elsbetiae_contig6720:4463..4578 | 1691683781.2171721-CDS-L-elsbetiae_contig6720:4463..4578 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 4464..4578 - |
1622816744.698054-CDS-L-elsbetiae_contig6720:5021..5134 | 1622816744.698054-CDS-L-elsbetiae_contig6720:5021..5134 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 5022..5134 - |
1691683781.226534-CDS-L-elsbetiae_contig6720:5021..5134 | 1691683781.226534-CDS-L-elsbetiae_contig6720:5021..5134 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 5022..5134 - |
1622816744.7099593-CDS-L-elsbetiae_contig6720:6263..6338 | 1622816744.7099593-CDS-L-elsbetiae_contig6720:6263..6338 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 6264..6338 - |
1691683781.235965-CDS-L-elsbetiae_contig6720:6263..6338 | 1691683781.235965-CDS-L-elsbetiae_contig6720:6263..6338 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 6264..6338 - |
1622816744.7211015-CDS-L-elsbetiae_contig6720:6922..7024 | 1622816744.7211015-CDS-L-elsbetiae_contig6720:6922..7024 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 6923..7024 - |
1691683781.2451608-CDS-L-elsbetiae_contig6720:6922..7024 | 1691683781.2451608-CDS-L-elsbetiae_contig6720:6922..7024 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 6923..7024 - |
1622816744.730723-CDS-L-elsbetiae_contig6720:7428..7518 | 1622816744.730723-CDS-L-elsbetiae_contig6720:7428..7518 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 7429..7518 - |
1691683781.2535243-CDS-L-elsbetiae_contig6720:7428..7518 | 1691683781.2535243-CDS-L-elsbetiae_contig6720:7428..7518 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 7429..7518 - |
1622816744.7412004-CDS-L-elsbetiae_contig6720:7843..8458 | 1622816744.7412004-CDS-L-elsbetiae_contig6720:7843..8458 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 7844..8458 - |
1691683781.2696362-CDS-L-elsbetiae_contig6720:7843..8458 | 1691683781.2696362-CDS-L-elsbetiae_contig6720:7843..8458 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 7844..8458 - |
1622816744.7519312-CDS-L-elsbetiae_contig6720:8879..9178 | 1622816744.7519312-CDS-L-elsbetiae_contig6720:8879..9178 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 8880..9178 - |
1691683781.277808-CDS-L-elsbetiae_contig6720:8879..9178 | 1691683781.277808-CDS-L-elsbetiae_contig6720:8879..9178 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 8880..9178 - |
1622816744.7675982-CDS-L-elsbetiae_contig6720:9758..9903 | 1622816744.7675982-CDS-L-elsbetiae_contig6720:9758..9903 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 9759..9903 - |
1691683781.2905042-CDS-L-elsbetiae_contig6720:9758..9903 | 1691683781.2905042-CDS-L-elsbetiae_contig6720:9758..9903 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6720 9759..9903 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6720.15464.1 >prot_L-elsbetiae_contig6720.15464.1 ID=prot_L-elsbetiae_contig6720.15464.1|Name=mRNA_L-elsbetiae_contig6720.15464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=518bp
MASALMTMDAERGPGVPVMSETSKPRSSSIDLGAEVVVKRDGELHGQRGS VVDRRQGWYRVQLDGSEDVKSFRWAELNEIQASSLPRLPAAGSQGRPQSP SPSKKKKASSGSPAPAILLPSTPGPAAGLPPRHPSTTAVAAAVVGEKTNL VARPAAKGRASPAHGDANSSPASAAAARRGGRGEPDEKAASVVDGEETET DDDNEEGNGSGGGGGGDGREDTEPDEVKGAAADAAPDVKADDDDEEEEEE EEMDIDAMIKLAAAAARKHHASALARASSGGGGPGSSSGGGTAAGQSNHL LTGAGGSGAGGGNIEVARKRPRVSGVAPRALDSGLAGPKYLNYGGTQKGE NLTASVPSGVVDGGKAAKLMAGSALYSGRDRAMLLERTKAPKDDTAGKGW FNMEQAEMTPELKRDLQVIRMRNYVDTKRFYKASDKVSKFMQQIGTVKEG PAEYFSSRMTKKERKKTLVDELLVADDAFRAYSKSQYSSIQSRKRAGGKA AYNEQKRKRSGGTKWKP* back to topmRNA from alignment at L-elsbetiae_contig6720:3829..9904- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6720.15464.1 ID=mRNA_L-elsbetiae_contig6720.15464.1|Name=mRNA_L-elsbetiae_contig6720.15464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6076bp|location=Sequence derived from alignment at L-elsbetiae_contig6720:3829..9904- (Laminarionema elsbetiae ELsaHSoW15) GATGGCATCAGCACTGATGACTATGGACGCTGAGAGGGGACCTGGTGTGC
CAGTCATGTCGGAAACTTCCAAACCACGATCGTCAAGCATTGATCTAGGA
GCTGAGGTGGTAGTGAAGAGAGATGGGGAACTCCACGGGCAGCGAGGTGA
GAGGCGAAACGAGTGTATATTTGGTCGCTGCCGTCCCTTCACCGCCCTAA
AAGGTATCCCCGCAGTTGTACCAGCGGGGACCTTTCCAAGAGAGGGTGTG
CAACGCGTGGGCCGCTGCTCGTTGTCACACCTGCCGACAGCAGCAAAAGT
ATTGAAGCTACTGCAAGCTTGCATCGCTCCACCTGCTGCAGAGAACGGCG
ACAACTAAGTCTGTTCGTAACCACTGACCCCATCTTACCTACAGAAGTCC
GATACTCCTGGCACACGACCCCTCCACGCTGCTACGGATGGGCGCCTCAC
TTGTACCTTGAAACGAACCAGCGGGAAAGCCGCTGAGCACTCAGATACAT
CACCCGGCCACGCCTACTATCGAGAGTTGCACTCACGTCCTGGCGACGTA
CCCATCTCTACATGTGTAGTCCTATCTAGATGTAGTCCAGAGCGTCCTCT
GTCCCTGATGAAATCCCCGTCAACCCAACAATACTCCGTCTCTCTCCAAG
CAAACTCTCGGACAACAGCCCAAACATATTTCCTCTGCCCCTTCCCATGA
CCCCCTCGACGACACCGCGCCCACAGGCTCCGTCGTAGACCGGAGGCAGG
GCTGGTACAGGGTCCAGCTCGACGGAAGCGAAGACGTTAAGAGCTTCCGA
TGGGCCGAGCTCAACGAGATACAAGCCTCCTCGCTTCCCCGCCTCCCGGC
GGCCGGGAGCCAGGGTAGACCCCAATCGCCATCCCCTTCCAAGAAGAAAA
AAGCCTCCTCGGGTTCTCCGGCGCCGGCGATTTTGCTGCCGTCGACACCA
GGACCTGCGGCGGGGCTGCCGCCGAGGCACCCTTCAACCACGGCGGTTGC
CGCCGCTGTGGTAGGGGAGAAGACGGTGAGGAGGGAGGGGGGGGGGGGCG
GAGGGGGTGCGATATAAACCCGACTGGAACTGTGCGTTCCCGTGGAACTG
TGCGTTCCCGGCCCGTGGTCTTGTGTCGAAAGCGCAAGGTTAAACGGTGG
GAGTAGTACCTACTAGCGTGACCCGCGGCGACAACAAGAGCTTGAGCCTC
GTGGTGCCCGCTCCGCTACAAGCGCATTCCTGAAAGGTTCGCGACACACC
ATTCCTGTAGTGGTCTGTCCTTGCCCCCTGCCGGCCGTCGGATCAGTGCA
CATACATATGTACAACAAACACATGCGTCTTTATTTATTGCCTATCAATA
CGCTCTCTGACTGTCTTCCCTCCCTTCCTTGTCCGGAACATCCATCGGCT
CTGCTTCTTTCTTCCGCGTCCTCGCGCCTCGCCCCCGGCCCGGTAGAACT
TAGTCGCGCGGCCAGCAGCAAAGGGACGCGCTTCCCCCGCACACGGCGAC
GCCAATAGCTCTCCTGCTTCGGCAGCGGCGGCACGACGGGGAGGGCGGGG
GGAACCAGACGAGAAGGCAGCATCAGTAGTGGATGGAGAGGAGACGGAGA
CGGACGACGACAACGAGGAGGGCAACGGCAGTGGCGGTGGCGGTGGCGGC
GACGGCAGAGAGGACACCGAGCCAGACGAGGTCAAAGGCGCGGCTGCGGA
TGCGGCCCCGGACGTAAAGGCGGATGATGATGATGAGGAGGAGGAGGAGG
AGGAAGAGATGGACATCGATGCGATGATAAAGCTCGCCGCGGCCGCCGCG
CGAAAGCACCACGCGTCGGCCCTGGCGAGAGCATCTTCGGGAGGAGGAGG
ACCAGGCTCAAGCTCCGGGGGGGGAACCGCCGCGGGTCAATCAAATCACC
TGTTGACGGGTGCCGGTGGCAGTGGCGCCGGAGGAGGCAATATAGAGGTG
GCACGAAAGCGGCCGCGCGTGAGTGGCGTGGCCCCGAGAGCCCTGGACAG
CGGTCTTGCGGGCCCCAAGTACCTTAACTACGGCGGGACGCAAAAGGGGG
AAAATCTGACTGTAAGTTCGGCCGGCGGTTGGACCGACTACATTTGTAGT
TCGGAACCGATCCGCAAGCCGATCTGCAAGCGGACCAGATTTGCGTTTGT
TTAGACTTAAAAGTGTGTATGCAGCACTACTGTATGCCTCGTGGCCGTTC
AACTCGTGCTGCTATGCTATGCAGGAAAGTGGACCCTCTGTCCCTCTCCC
TTCCGGGGGGCGGTCGGTGCACATCCTTGGTTTGCCTCATCAAACCCCCC
TCCAGACTTTACGCTGGTTTTGACAAGCCCCCCCCTCCTCTGGCTTGTTG
TTGTCTTGCATATGCGTGGCCAACTTTTCCGTGCAGGCCTCCGTGCCGTC
GGGTGTGGTGGACGGTGGCAAGGCGGCGAAGCTCATGGCCGGGAGCGCTC
TGTACAGTGGTCGGGACCGAGCCATGGTAGGCTCGCTTTGAAGCATGGGC
GTGATTTTTATTTCCCTTTCCTTTGTTCGTCGTTCCCTGCTGTTGTATCA
GCAGGTCGACACCCAAGCAGGTCGACCAGCGCGCGTGTGTGTGTGTCTGT
CTGTGTGTCTTGGTGTGTGTGTAAGCGCGCCGCATGTGCCTGCAGAAGCT
ACTTTGCCTGCCCCTTTTTTCATTGCGTGTGTATCGGTGCAGAAGTATTT
ATTTATATATAGGTGTGCGTGCGCGCCGCAGAATGAACGCCCACGAAGTT
GCCAGGAAGGAAAATAGTTGTTTTCGTGTGACGTTTGGGAAATTGATAAG
CCCCCTGCCCCTCCCGTTTCATGCGCTACCGGTGCGTGATTGTATACGAC
GGCCATGTCACCGAATACGGCCAACAACAGCTGCTGGAAAGGACCAAGGC
CCCGAAGGATGACACGGCGGGCAAGGGGTGGTTTAACATGGAACAGGCGG
AGATGACGCCAGAGCTCAAGCGGGACCTACAGGTACAAATGGGATGCAGC
CACAAGGCACGAGTTGGCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
TTATTGCTGTTGGTGGTGGTGTGGGGTAGCGAGAATGTTCCGCCCGCGCC
TACTGTAGCGCCATGAGCGGCGGCCATAATTCAGTTTTGAGTATGTATGT
TTACAGATGTATGTAGGTATATGTCTCCCCAAGAACGCCTCCATCTTTTT
TTCACGTTTCTTTTTTTGCCTTATGCGGCTCCCCTCTCCGGGGGCCTCGA
TGTTGCTGCCTCTGTCACTGATGCAACGCTGCAAAGGCCGAGAAGAACCC
CGATCGTGCGTGCGTATACTCAAGAGATTCACGATTGCGTGTGCTACTGC
TGTTGTACATACATATGTAGAGGTTTTTCAATCCGTGGGTGTGCGGACGC
TCTGTTAACGCCCTCTGCCCATCTAATTTAGCGGCTTTTGTTTTTTGTTT
TTTAACTCACCCTGCAGTTTCTTCCTAGACGACTCGTGCAAAATTTACGA
TTTTACAGCGTTTTCTCTATGTTTTTTCGGTCTTGTTGGTCGGCGCTGGG
GATAAAAACAAACCAGGTGATTCGCATGCGAAACTACGTGGATACGAAAC
GCTTCTACAAGGCCTCCGACAAGGTCTCCAAGTTTATGCAGGTGAGGGAT
AACACGCGTCCGGCTCGTGTTGAACTTCGTGGTAGATCTATATGGGGAGC
ACCCTTTTCGAGCATTGCAATTGAACGGGATGGCTGATGCGGGAGAAGAG
ACGATGCACACAGCACGTTCTTTGGGAGCATTCATTGCTCCTCGGGATCG
AGATATTTTGGTTTTGGATGAAGGACGTGCAAGGTGGGTTTAGTGTCTCC
CATTTTCTAGCCCCCACCACTCACAACTGGATGTGTTTGCTCTCTTCAGG
TCCGATTGACGACGAATCTTGTTCCCGGACTAGTAGTTGTTGTTGTTGTT
GCTGCTGCTGCTTTGCTTCTTCACATTCAAAACCGTTCCGATCTCTCCAC
CCAGTGCCTCCCGATGTCCGTACAATCCAGCACTTGGTGCGGTCAATGCC
CGACGCCACAGGCTATGTAACTTTTACCTAAGAAAGATATCTACGAAACT
AAAATGTAGTGCGCGCGTGTATATCCGCAGGTGGCTATTCACTCGATTCG
TAGATACCAACACGATTTTCAGCACCCCAGCAGAACGCTTGGTTTTCGGC
ACGCATTAAATAGGGAGGAAAAACGAGCTGGTCGTTCCGCCCTCATGAGT
ACTGCATCGCTCTCCACTCTTTCTCTGTGTGACGCGCGCGAGCAGAGGAA
CTCTTCTGTCTGCACCGCTGCGGTGGACTGGCCTCCAGCGCCCGACTCTT
AACCCCCCGCCCAACCGCCGCCGCCGCCGCCTTTGATCAACGACGAACCC
ACTGGTGGTGTCCGTTGCCGTTTTGTTCACGTTCGTGAGCCATGAACCGA
CCATGAACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCTCCTCGTCGCTCCCCCACCACCCTTCTTTCCCTCCCTCACTGGCGTC
AGCCCACGCGCGTTTTTCCTNNNNNNNNNNCCTTTGATCACCACCCCCCC
CCCGGGGGGGGCCCTTTCCCTTTTTTTTCCCGTTCGGGAGCCAAAACCCG
CCCCTGGCCCCCCCCCCCCCCCCCCCGTCTCCCCCTGTTTCCACGCCACG
TGGATTTCGGCTTCCGGGCCTTTTTGTTCGTCCTGTCCTTGGGGGCTCCG
CACGGTGTTTTCCACGGGAGCAGATCGGCACCGTGAAGGAAGGCCCCGCC
GAGTACTTCTCCTCGCGCATGACCAAAAAGGAGCGCAAGAAGACCCTGGT
GGACGAGCTGCTCGTGGCCGACGACGCCTTTAGGTATGCTAAATTCATGC
TTTGCTGTGGTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGTTCTATTG
TATGTTATGCTGTTCTTTGCTGTGCTGTGCCATGGTGCGGTTTGCTATGG
TTGTACGGTTCGACCACAGCAATTTTGCATGCAGTCTCTGCATACAAGTG
GCGTTTCCTTGCGTTTTGTTCCATCGGGAGGGGCAGGTGTCGTTTTCGTG
GATTTGTTTTTTGTCCGTTGCTCCGAGAAACGAAGGTGGGTTAGGTAGTG
GGATGGTCCCTAAACGTTCAATCGTCGCGGGAAGGATGGCAGTTGGCGAT
GAAGCTGTCCGGATGCGCACGAAGACGCCTACCTCATGCTTGTGTTTTGC
GCCCTTTTGTTTTTACGCTTGTGTTTCGTCTTCCGTGTCCTTTTCCACTC
GCTCACTCGCTTCTCTTCTTCCGCAGGGCGTACTCGAAGAGCCAGTACAG
CTCGATCCAGTCAAGGAAGCGGGCTGGAGGAAAGGCCGCCTACAACGAGC
AGAAGCGCAAGAGAAGCGGCGGGACGAAGTGGAAGCCGTAGACTAACCCC
GGCGTAAATACCAAATATCTGCGTGCGTGAACATCGCCAAGCCGCTGGTG
TAGTAGATTCTCTTGGCTCGTGGGCAGGAAGAACTCGCCGAAGGCGGGGT
GCTGCAGTGGACGAAAGACGGCGCAGAGATCGGTGCTGGTGGGACAGGCG
CCGAGGGCGTGCTTGCGTGAAAAAAGAACACGAGTAATAATGCGGTGTTT
GAGCTTTGTTGTGACGTGTAGCCGGCGCGCGTCGAAGTATAGCGCGTTAA
GTCTTGGGGGCTCGAGGCAGATGTTGTGCCGTTGGAGGAGCAAGGCAAAG
AGCCAGACGAGGTGGCCCGGAAGTGCGTGCTATTGTGCCTACATACGCGT
TTAATTGTATTCTGTCTTGCAAACAAGAAGTACAACGGAGATCCCGGATG
AAGTGTGGAAGCAGATATCATGAAACCGCGAGGGGGGGGGTTGCTGGGAC
GGGAGTCCGTGAACGGAGAAAAGGAGCGTTGCACCACGGTTTCACCATGG
AAGATAGGTTGCTCGCTGTGAGAGCAGGCTGAAAGACCACCACTGCAAGC
CTTTGATTATTTATTGAGAGACGAAAGTGCGATGTAGGCCGCGATCCTGC
CACAAAAATAAAAAAGCCCTTTGCAC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6720:3829..9904- >mRNA_L-elsbetiae_contig6720.15464.1 ID=mRNA_L-elsbetiae_contig6720.15464.1|Name=mRNA_L-elsbetiae_contig6720.15464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3108bp|location=Sequence derived from alignment at L-elsbetiae_contig6720:3829..9904- (Laminarionema elsbetiae ELsaHSoW15) ATGGCATCAGCACTGATGACTATGGACGCTGAGAGGGGACCTGGTGTGCC AGTCATGTCGGAAACTTCCAAACCACGATCGTCAAGCATTGATCTAGGAG CTGAGGTGGTAGTGAAGAGAGATGGGGAACTCCACGGGCAGCGAGATGGC ATCAGCACTGATGACTATGGACGCTGAGAGGGGACCTGGTGTGCCAGTCA TGTCGGAAACTTCCAAACCACGATCGTCAAGCATTGATCTAGGAGCTGAG GTGGTAGTGAAGAGAGATGGGGAACTCCACGGGCAGCGAGGCTCCGTCGT AGACCGGAGGCAGGGCTGGTACAGGGTCCAGCTCGACGGAAGCGAAGACG TTAAGAGCTTCCGATGGGCCGAGCTCAACGAGATACAAGCCTCCTCGCTT CCCCGCCTCCCGGCGGCCGGGAGCCAGGGTAGACCCCAATCGCCATCCCC TTCCAAGAAGAAAAAAGCCTCCTCGGGTTCTCCGGCGCCGGCGATTTTGC TGCCGTCGACACCAGGACCTGCGGCGGGGCTGCCGCCGAGGCACCCTTCA ACCACGGCGGTTGCCGCCGCTGTGGTAGGGGAGAAGACGGCTCCGTCGTA GACCGGAGGCAGGGCTGGTACAGGGTCCAGCTCGACGGAAGCGAAGACGT TAAGAGCTTCCGATGGGCCGAGCTCAACGAGATACAAGCCTCCTCGCTTC CCCGCCTCCCGGCGGCCGGGAGCCAGGGTAGACCCCAATCGCCATCCCCT TCCAAGAAGAAAAAAGCCTCCTCGGGTTCTCCGGCGCCGGCGATTTTGCT GCCGTCGACACCAGGACCTGCGGCGGGGCTGCCGCCGAGGCACCCTTCAA CCACGGCGGTTGCCGCCGCTGTGGTAGGGGAGAAGACGAACTTAGTCGCG CGGCCAGCAGCAAAGGGACGCGCTTCCCCCGCACACGGCGACGCCAATAG CTCTCCTGCTTCGGCAGCGGCGGCACGACGGGGAGGGCGGGGGGAACCAG ACGAGAAGGCAGCATCAGTAGTGGATGGAGAGGAGACGGAGACGGACGAC GACAACGAGGAGGGCAACGGCAGTGGCGGTGGCGGTGGCGGCGACGGCAG AGAGGACACCGAGCCAGACGAGGTCAAAGGCGCGGCTGCGGATGCGGCCC CGGACGTAAAGGCGGATGATGATGATGAGGAGGAGGAGGAGGAGGAAGAG ATGGACATCGATGCGATGATAAAGCTCGCCGCGGCCGCCGCGCGAAAGCA CCACGCGTCGGCCCTGGCGAGAGCATCTTCGGGAGGAGGAGGACCAGGCT CAAGCTCCGGGGGGGGAACCGCCGCGGGTCAATCAAATCACCTGTTGACG GGTGCCGGTGGCAGTGGCGCCGGAGGAGGCAATATAGAGGTGGCACGAAA GCGGCCGCGCGTGAGTGGCGTGGCCCCGAGAGCCCTGGACAGCGGTCTTG CGGGCCCCAAGTACCTTAACTACGGCGGGACGCAAAAGGGGGAAAATCTG ACTAACTTAGTCGCGCGGCCAGCAGCAAAGGGACGCGCTTCCCCCGCACA CGGCGACGCCAATAGCTCTCCTGCTTCGGCAGCGGCGGCACGACGGGGAG GGCGGGGGGAACCAGACGAGAAGGCAGCATCAGTAGTGGATGGAGAGGAG ACGGAGACGGACGACGACAACGAGGAGGGCAACGGCAGTGGCGGTGGCGG TGGCGGCGACGGCAGAGAGGACACCGAGCCAGACGAGGTCAAAGGCGCGG CTGCGGATGCGGCCCCGGACGTAAAGGCGGATGATGATGATGAGGAGGAG GAGGAGGAGGAAGAGATGGACATCGATGCGATGATAAAGCTCGCCGCGGC CGCCGCGCGAAAGCACCACGCGTCGGCCCTGGCGAGAGCATCTTCGGGAG GAGGAGGACCAGGCTCAAGCTCCGGGGGGGGAACCGCCGCGGGTCAATCA AATCACCTGTTGACGGGTGCCGGTGGCAGTGGCGCCGGAGGAGGCAATAT AGAGGTGGCACGAAAGCGGCCGCGCGTGAGTGGCGTGGCCCCGAGAGCCC TGGACAGCGGTCTTGCGGGCCCCAAGTACCTTAACTACGGCGGGACGCAA AAGGGGGAAAATCTGACTGCCTCCGTGCCGTCGGGTGTGGTGGACGGTGG CAAGGCGGCGAAGCTCATGGCCGGGAGCGCTCTGTACAGTGGTCGGGACC GAGCCATGGCCTCCGTGCCGTCGGGTGTGGTGGACGGTGGCAAGGCGGCG AAGCTCATGGCCGGGAGCGCTCTGTACAGTGGTCGGGACCGAGCCATGCT GCTGGAAAGGACCAAGGCCCCGAAGGATGACACGGCGGGCAAGGGGTGGT TTAACATGGAACAGGCGGAGATGACGCCAGAGCTCAAGCGGGACCTACAG CTGCTGGAAAGGACCAAGGCCCCGAAGGATGACACGGCGGGCAAGGGGTG GTTTAACATGGAACAGGCGGAGATGACGCCAGAGCTCAAGCGGGACCTAC AGGTGATTCGCATGCGAAACTACGTGGATACGAAACGCTTCTACAAGGCC TCCGACAAGGTCTCCAAGTTTATGCAGGTGATTCGCATGCGAAACTACGT GGATACGAAACGCTTCTACAAGGCCTCCGACAAGGTCTCCAAGTTTATGC AGCAGATCGGCACCGTGAAGGAAGGCCCCGCCGAGTACTTCTCCTCGCGC ATGACCAAAAAGGAGCGCAAGAAGACCCTGGTGGACGAGCTGCTCGTGGC CGACGACGCCTTTAGCAGATCGGCACCGTGAAGGAAGGCCCCGCCGAGTA CTTCTCCTCGCGCATGACCAAAAAGGAGCGCAAGAAGACCCTGGTGGACG AGCTGCTCGTGGCCGACGACGCCTTTAGGGCGTACTCGAAGAGCCAGTAC AGCTCGATCCAGTCAAGGAAGCGGGCTGGAGGAAAGGCCGCCTACAACGA GCAGAAGCGCAAGAGAAGCGGCGGGACGAAGTGGAAGCCGTAGGGCGTAC TCGAAGAGCCAGTACAGCTCGATCCAGTCAAGGAAGCGGGCTGGAGGAAA GGCCGCCTACAACGAGCAGAAGCGCAAGAGAAGCGGCGGGACGAAGTGGA AGCCGTAG back to top
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