mRNA_L-elsbetiae_contig6719.15461.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6719.15461.1
Unique NamemRNA_L-elsbetiae_contig6719.15461.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6719.15461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6719contigL-elsbetiae_contig6719:2355..4940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1888
Cds size1887
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816744.0638618-CDS-L-elsbetiae_contig6719:2354..24621622816744.0638618-CDS-L-elsbetiae_contig6719:2354..2462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6719 2355..2462 +
1691683780.9717627-CDS-L-elsbetiae_contig6719:2354..24621691683780.9717627-CDS-L-elsbetiae_contig6719:2354..2462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6719 2355..2462 +
1622816744.0791595-CDS-L-elsbetiae_contig6719:3161..49401622816744.0791595-CDS-L-elsbetiae_contig6719:3161..4940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6719 3162..4940 +
1691683780.983403-CDS-L-elsbetiae_contig6719:3161..49401691683780.983403-CDS-L-elsbetiae_contig6719:3161..4940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6719 3162..4940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6719.15461.1prot_L-elsbetiae_contig6719.15461.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6719 2355..4940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6719.15461.1

>prot_L-elsbetiae_contig6719.15461.1 ID=prot_L-elsbetiae_contig6719.15461.1|Name=mRNA_L-elsbetiae_contig6719.15461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=629bp
GSNEKISGGGGLVEDGGVSVASSYRSASFEGDGDTSESAMSGPAPEMTAI
ELVTEISPARSDETTEAAAVTTSPASSSLTATSPSERQLATAVGGGNSDA
SRSPPPLLVNSPLPFEDHPHAKIDTVPSLERPQPFEELSFPTNDDSSPPP
PLMLERDITNSAEVPAVTMPQVLRGLAGDGEPLDEVDNNAATAAAGEGTD
AESRKPPELNVDRSPSQSFADADREDACTSDVEGTIAPADNDAIAHSATG
NTSDSESATGTAALTILETTAAPESPADAGEPPNDGRLVEEPQQSSGEPA
EIRGGSSSLGVEVASLEDASTGPSLPSPGLEEIAPDMISEHEELPSTTAL
SFVGGGENQRCLSDKGEGEEVGLPPSGGAEDQSSPAPTQQPDEITRENGD
RENANFSGDDLQAPIVPFEEQGGGTFGLETETGAEVASSADAAHQAASET
KYVEHLQPQLHTETANVQHLESQFQDARNGGFGGSTHLKPAEQDGGDADD
ESVPESPVSSLALATEADVEDGDTAKVRAEDDQDDSVPQQPSKEATPTAA
AAISEHLLAAGRTLLGPLQTTEDGVGDSAAADSAEPGDVIRENAPTRDGI
DDALAEEETDSMNIVANEATPTAAAATSE
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mRNA from alignment at L-elsbetiae_contig6719:2355..4940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6719.15461.1 ID=mRNA_L-elsbetiae_contig6719.15461.1|Name=mRNA_L-elsbetiae_contig6719.15461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2586bp|location=Sequence derived from alignment at L-elsbetiae_contig6719:2355..4940+ (Laminarionema elsbetiae ELsaHSoW15)
GGTAGCAATGAAAAGATCAGCGGCGGCGGGGGGCTGGTGGAAGATGGAGG
AGTGTCGGTCGCAAGCAGTTACAGGAGCGCGAGTTTCGAAGGCGACGGAG
ATACCTCGGTGAGATGCTACGCCATCCAAAATCATTTGAACATGGCGAAG
GGGCAGGGTTATGCAATGCAACTTGAGCCATGGGTTCGGCGGTTGGGTAT
GTATGTAGCAATTTCACGCTCGGTTCTCTTGGACGGCGATAATTCAAACG
TGATATAGTCAACGCTAGTTGACGAGCGAGCTTGGAACGGTTAGCTGGGG
CAACGCATGCCAAAGGCGAGAGCGGGCAAGCAGCTATTCGAAGGGGCAGG
GTGCCGAACTTAGAGCCAATGAACTGCCTGAGTTTGAGTTCGAGATGATG
CTTGGACGAAACAAAAAGTTAGTTGACTTGCTAGCATGGAGTTTGAGGAA
GGCAGGAAATGCCTTGACAGTTTCTTAAGAGGGACTCGTTTCGCTTCGAC
GCTCGCGGGGTGACACGTTACACGGTCAGTGGGGTATTGTGGCTATCGAG
AAGACGGCCAGGGCTCCTTCGACAAACTTCGTCCTTGATTGAATGTGCAC
GCATATGGATAGGTCACAGTCGGCCACTTACGAATGAAAGTTGCATGCCT
TTGGAGTGCGCTCACTTGTAGCAGCCGTTCTGTCGTATTCGTGCTTAGCC
GGACAGTAGCAACATCAGGCAATGACGGGCGAGTGGGCCCGCCGCCACTA
CGACCGATCCCCCCATCATACCCCTCACACGTTTCTCGACCGTGGCGATT
GACCCAGGAATCGGCTATGTCTGGTCCCGCGCCGGAAATGACAGCTATCG
AATTGGTGACGGAGATATCGCCTGCTAGGAGCGATGAGACCACGGAAGCC
GCCGCTGTGACTACAAGTCCGGCTTCTTCCTCCCTAACAGCAACATCCCC
GAGCGAACGACAGCTTGCTACTGCAGTGGGAGGCGGGAATAGCGATGCCA
GCCGGTCACCTCCACCGTTGTTGGTAAACTCACCATTGCCGTTCGAGGAC
CACCCACATGCCAAGATCGACACAGTTCCGTCTTTGGAAAGACCGCAACC
GTTCGAGGAGTTATCATTTCCGACCAACGACGACTCATCGCCGCCACCCC
CGCTAATGCTCGAACGTGATATTACAAACAGCGCCGAGGTTCCCGCTGTC
ACCATGCCGCAGGTCTTGCGTGGCCTCGCCGGCGACGGTGAACCTTTGGA
CGAGGTGGACAACAACGCCGCCACTGCGGCGGCGGGCGAGGGTACAGACG
CAGAGTCAAGAAAACCACCAGAACTTAATGTCGATCGATCTCCTTCGCAG
AGTTTCGCTGATGCTGACAGAGAGGATGCTTGCACCAGCGACGTCGAGGG
CACGATAGCTCCTGCTGACAACGATGCAATCGCCCATTCTGCTACCGGTA
ACACCAGCGACAGCGAAAGTGCTACTGGCACTGCGGCACTAACCATCCTC
GAGACAACTGCTGCACCCGAATCGCCTGCTGACGCAGGCGAGCCACCAAA
CGACGGCAGACTAGTAGAGGAGCCACAGCAGAGCAGCGGTGAACCCGCGG
AAATACGTGGAGGGTCCAGCAGCTTGGGCGTGGAAGTGGCATCCCTGGAA
GATGCCAGCACCGGGCCATCTTTGCCGTCTCCCGGCTTGGAAGAAATAGC
ACCAGATATGATCAGCGAGCACGAGGAGCTGCCGTCGACAACAGCCTTAT
CGTTTGTCGGAGGCGGTGAGAACCAGCGTTGCCTCAGTGACAAGGGCGAA
GGTGAAGAGGTCGGTCTACCGCCATCTGGTGGAGCAGAAGACCAATCATC
ACCGGCTCCAACTCAGCAGCCAGATGAAATCACCAGAGAAAACGGCGATC
GTGAGAATGCCAATTTTAGCGGCGACGACCTTCAAGCACCCATTGTACCA
TTTGAAGAACAAGGCGGTGGGACCTTTGGACTTGAGACTGAGACTGGGGC
GGAGGTGGCATCATCGGCAGACGCGGCGCATCAGGCAGCTAGTGAGACGA
AATACGTCGAACATCTCCAACCTCAGCTTCATACTGAGACGGCAAACGTC
CAACATCTCGAATCTCAGTTTCAAGATGCGCGAAATGGAGGGTTCGGGGG
CAGTACGCACCTTAAGCCGGCTGAGCAAGACGGTGGTGATGCGGACGACG
AAAGCGTACCTGAGTCTCCTGTATCGTCTCTAGCACTGGCCACGGAAGCG
GACGTGGAGGATGGAGACACGGCGAAGGTGCGTGCGGAGGATGACCAGGA
CGACTCCGTGCCACAACAACCATCGAAGGAAGCCACACCAACAGCTGCAG
CTGCAATAAGTGAACACCTGCTGGCGGCGGGGAGAACTCTGCTCGGGCCA
CTGCAGACGACAGAAGATGGTGTTGGCGATTCCGCCGCCGCCGATAGTGC
CGAACCTGGTGATGTTATAAGAGAAAATGCACCCACCAGAGACGGGATCG
ATGACGCGCTGGCGGAGGAGGAAACAGATTCTATGAACATCGTTGCCAAC
GAAGCAACACCAACAGCTGCAGCTGCAACAAGCGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6719:2355..4940+

>mRNA_L-elsbetiae_contig6719.15461.1 ID=mRNA_L-elsbetiae_contig6719.15461.1|Name=mRNA_L-elsbetiae_contig6719.15461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3774bp|location=Sequence derived from alignment at L-elsbetiae_contig6719:2355..4940+ (Laminarionema elsbetiae ELsaHSoW15)
GGTAGCAATGAAAAGATCAGCGGCGGCGGGGGGCTGGTGGAAGATGGAGG
AGTGTCGGTCGCAAGCAGTTACAGGAGCGCGAGTTTCGAAGGCGACGGAG
ATACCTCGGGTAGCAATGAAAAGATCAGCGGCGGCGGGGGGCTGGTGGAA
GATGGAGGAGTGTCGGTCGCAAGCAGTTACAGGAGCGCGAGTTTCGAAGG
CGACGGAGATACCTCGGAATCGGCTATGTCTGGTCCCGCGCCGGAAATGA
CAGCTATCGAATTGGTGACGGAGATATCGCCTGCTAGGAGCGATGAGACC
ACGGAAGCCGCCGCTGTGACTACAAGTCCGGCTTCTTCCTCCCTAACAGC
AACATCCCCGAGCGAACGACAGCTTGCTACTGCAGTGGGAGGCGGGAATA
GCGATGCCAGCCGGTCACCTCCACCGTTGTTGGTAAACTCACCATTGCCG
TTCGAGGACCACCCACATGCCAAGATCGACACAGTTCCGTCTTTGGAAAG
ACCGCAACCGTTCGAGGAGTTATCATTTCCGACCAACGACGACTCATCGC
CGCCACCCCCGCTAATGCTCGAACGTGATATTACAAACAGCGCCGAGGTT
CCCGCTGTCACCATGCCGCAGGTCTTGCGTGGCCTCGCCGGCGACGGTGA
ACCTTTGGACGAGGTGGACAACAACGCCGCCACTGCGGCGGCGGGCGAGG
GTACAGACGCAGAGTCAAGAAAACCACCAGAACTTAATGTCGATCGATCT
CCTTCGCAGAGTTTCGCTGATGCTGACAGAGAGGATGCTTGCACCAGCGA
CGTCGAGGGCACGATAGCTCCTGCTGACAACGATGCAATCGCCCATTCTG
CTACCGGTAACACCAGCGACAGCGAAAGTGCTACTGGCACTGCGGCACTA
ACCATCCTCGAGACAACTGCTGCACCCGAATCGCCTGCTGACGCAGGCGA
GCCACCAAACGACGGCAGACTAGTAGAGGAGCCACAGCAGAGCAGCGGTG
AACCCGCGGAAATACGTGGAGGGTCCAGCAGCTTGGGCGTGGAAGTGGCA
TCCCTGGAAGATGCCAGCACCGGGCCATCTTTGCCGTCTCCCGGCTTGGA
AGAAATAGCACCAGATATGATCAGCGAGCACGAGGAGCTGCCGTCGACAA
CAGCCTTATCGTTTGTCGGAGGCGGTGAGAACCAGCGTTGCCTCAGTGAC
AAGGGCGAAGGTGAAGAGGTCGGTCTACCGCCATCTGGTGGAGCAGAAGA
CCAATCATCACCGGCTCCAACTCAGCAGCCAGATGAAATCACCAGAGAAA
ACGGCGATCGTGAGAATGCCAATTTTAGCGGCGACGACCTTCAAGCACCC
ATTGTACCATTTGAAGAACAAGGCGGTGGGACCTTTGGACTTGAGACTGA
GACTGGGGCGGAGGTGGCATCATCGGCAGACGCGGCGCATCAGGCAGCTA
GTGAGACGAAATACGTCGAACATCTCCAACCTCAGCTTCATACTGAGACG
GCAAACGTCCAACATCTCGAATCTCAGTTTCAAGATGCGCGAAATGGAGG
GTTCGGGGGCAGTACGCACCTTAAGCCGGCTGAGCAAGACGGTGGTGATG
CGGACGACGAAAGCGTACCTGAGTCTCCTGTATCGTCTCTAGCACTGGCC
ACGGAAGCGGACGTGGAGGATGGAGACACGGCGAAGGTGCGTGCGGAGGA
TGACCAGGACGACTCCGTGCCACAACAACCATCGAAGGAAGCCACACCAA
CAGCTGCAGCTGCAATAAGTGAACACCTGCTGGCGGCGGGGAGAACTCTG
CTCGGGCCACTGCAGACGACAGAAGATGGTGTTGGCGATTCCGCCGCCGC
CGATAGTGCCGAACCTGGTGATGTTATAAGAGAAAATGCACCCACCAGAG
ACGGGATCGATGACGCGCTGGCGGAGGAGGAAACAGATTCTATGAACATC
GTTGCCAACGAAGCAACACCAACAGCTGCAGCTGCAACAAGCGAAGAATC
GGCTATGTCTGGTCCCGCGCCGGAAATGACAGCTATCGAATTGGTGACGG
AGATATCGCCTGCTAGGAGCGATGAGACCACGGAAGCCGCCGCTGTGACT
ACAAGTCCGGCTTCTTCCTCCCTAACAGCAACATCCCCGAGCGAACGACA
GCTTGCTACTGCAGTGGGAGGCGGGAATAGCGATGCCAGCCGGTCACCTC
CACCGTTGTTGGTAAACTCACCATTGCCGTTCGAGGACCACCCACATGCC
AAGATCGACACAGTTCCGTCTTTGGAAAGACCGCAACCGTTCGAGGAGTT
ATCATTTCCGACCAACGACGACTCATCGCCGCCACCCCCGCTAATGCTCG
AACGTGATATTACAAACAGCGCCGAGGTTCCCGCTGTCACCATGCCGCAG
GTCTTGCGTGGCCTCGCCGGCGACGGTGAACCTTTGGACGAGGTGGACAA
CAACGCCGCCACTGCGGCGGCGGGCGAGGGTACAGACGCAGAGTCAAGAA
AACCACCAGAACTTAATGTCGATCGATCTCCTTCGCAGAGTTTCGCTGAT
GCTGACAGAGAGGATGCTTGCACCAGCGACGTCGAGGGCACGATAGCTCC
TGCTGACAACGATGCAATCGCCCATTCTGCTACCGGTAACACCAGCGACA
GCGAAAGTGCTACTGGCACTGCGGCACTAACCATCCTCGAGACAACTGCT
GCACCCGAATCGCCTGCTGACGCAGGCGAGCCACCAAACGACGGCAGACT
AGTAGAGGAGCCACAGCAGAGCAGCGGTGAACCCGCGGAAATACGTGGAG
GGTCCAGCAGCTTGGGCGTGGAAGTGGCATCCCTGGAAGATGCCAGCACC
GGGCCATCTTTGCCGTCTCCCGGCTTGGAAGAAATAGCACCAGATATGAT
CAGCGAGCACGAGGAGCTGCCGTCGACAACAGCCTTATCGTTTGTCGGAG
GCGGTGAGAACCAGCGTTGCCTCAGTGACAAGGGCGAAGGTGAAGAGGTC
GGTCTACCGCCATCTGGTGGAGCAGAAGACCAATCATCACCGGCTCCAAC
TCAGCAGCCAGATGAAATCACCAGAGAAAACGGCGATCGTGAGAATGCCA
ATTTTAGCGGCGACGACCTTCAAGCACCCATTGTACCATTTGAAGAACAA
GGCGGTGGGACCTTTGGACTTGAGACTGAGACTGGGGCGGAGGTGGCATC
ATCGGCAGACGCGGCGCATCAGGCAGCTAGTGAGACGAAATACGTCGAAC
ATCTCCAACCTCAGCTTCATACTGAGACGGCAAACGTCCAACATCTCGAA
TCTCAGTTTCAAGATGCGCGAAATGGAGGGTTCGGGGGCAGTACGCACCT
TAAGCCGGCTGAGCAAGACGGTGGTGATGCGGACGACGAAAGCGTACCTG
AGTCTCCTGTATCGTCTCTAGCACTGGCCACGGAAGCGGACGTGGAGGAT
GGAGACACGGCGAAGGTGCGTGCGGAGGATGACCAGGACGACTCCGTGCC
ACAACAACCATCGAAGGAAGCCACACCAACAGCTGCAGCTGCAATAAGTG
AACACCTGCTGGCGGCGGGGAGAACTCTGCTCGGGCCACTGCAGACGACA
GAAGATGGTGTTGGCGATTCCGCCGCCGCCGATAGTGCCGAACCTGGTGA
TGTTATAAGAGAAAATGCACCCACCAGAGACGGGATCGATGACGCGCTGG
CGGAGGAGGAAACAGATTCTATGAACATCGTTGCCAACGAAGCAACACCA
ACAGCTGCAGCTGCAACAAGCGAA
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