mRNA_L-elsbetiae_contig671.15452.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig671.15452.1
Unique NamemRNA_L-elsbetiae_contig671.15452.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig671.15452.1 vs. uniprot
Match: D8LGD5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD5_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 3.300e-59
Identity = 129/165 (78.18%), Postives = 138/165 (83.64%), Query Frame = 1 
Query:    1 RRHTGVEGHVRAEVSEMRNELAEALLRVEQLSAQESVLKATIRALETDLKTERQARDLGTGEAAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQMTRQEAADVEARIAELEKTMVGRAGXXXXXXXXXXXXXXXXXXXLVWGG-RAAPAESYTEPGIDGT 492
            RRHT VEGHV+AEV+EMRNELAEALLRVEQLSAQES+LK+TIRALETDL TER   +LG+GE APINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQ T+QE ADVEARI ELEKTMV RAG     XXXXXXX  XX   LVWGG RAAPA+     G+D T
Sbjct:    8 RRHTSVEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTER---NLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGXXXXXXXVVXXVVGLVWGGGRAAPADGGD--GVDVT 167
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BLAST of mRNA_L-elsbetiae_contig671.15452.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.030e-51
Identity = 123/165 (74.55%), Postives = 133/165 (80.61%), Query Frame = 1 
Query:    1 RRHTGVEGHVRAEVSEMRNELAEALLRVEQLSAQESVLKATIRALETDLKTERQARDLGTGEAAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQMTRQEAADVEARIAELEKTMVGRAGXXXXXXXXXXXXXXXXXXXLVWGG-RAAPAESYTEPGIDGT 492
            RRHT +EGHV+AEV+EMRNELAEALLRVEQLSAQES+LK+TIRALETDL TER   +LG+GE APINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQ T+QE ADVEARI ELEKTMV RAG       XXXXX       LVWGG RAA A+     G+D T
Sbjct: 1581 RRHTSLEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTER---NLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGAGXXXXXVVGGVVGLVWGGGRAAAADDGD--GVDVT 1740
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig671.15452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGD5_ECTSI3.300e-5978.18GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KSR4_9PHAE4.030e-5174.55GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig671contigL-elsbetiae_contig671:29403..32332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003630.1
Ec32 ortholog descriptionGRIP
Ec32 orthologEc-16_003640.1
Exons4
Model size1314
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig671.15452.1prot_L-elsbetiae_contig671.15452.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig671 29451..31525 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.3711631-UTR-L-elsbetiae_contig671:29402..294501622816743.3711631-UTR-L-elsbetiae_contig671:29402..29450Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig671 29403..29450 +
1691683780.4191093-UTR-L-elsbetiae_contig671:29402..294501691683780.4191093-UTR-L-elsbetiae_contig671:29402..29450Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig671 29403..29450 +
1622816743.4378633-UTR-L-elsbetiae_contig671:31525..323321622816743.4378633-UTR-L-elsbetiae_contig671:31525..32332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig671 31526..32332 +
1691683780.4742653-UTR-L-elsbetiae_contig671:31525..323321691683780.4742653-UTR-L-elsbetiae_contig671:31525..32332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig671 31526..32332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.3850527-CDS-L-elsbetiae_contig671:29450..295691622816743.3850527-CDS-L-elsbetiae_contig671:29450..29569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig671 29451..29569 +
1691683780.4319067-CDS-L-elsbetiae_contig671:29450..295691691683780.4319067-CDS-L-elsbetiae_contig671:29450..29569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig671 29451..29569 +
1622816743.3989778-CDS-L-elsbetiae_contig671:30005..300681622816743.3989778-CDS-L-elsbetiae_contig671:30005..30068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig671 30006..30068 +
1691683780.4437397-CDS-L-elsbetiae_contig671:30005..300681691683780.4437397-CDS-L-elsbetiae_contig671:30005..30068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig671 30006..30068 +
1622816743.4130967-CDS-L-elsbetiae_contig671:30602..307291622816743.4130967-CDS-L-elsbetiae_contig671:30602..30729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig671 30603..30729 +
1691683780.4555955-CDS-L-elsbetiae_contig671:30602..307291691683780.4555955-CDS-L-elsbetiae_contig671:30602..30729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig671 30603..30729 +
1622816743.4249876-CDS-L-elsbetiae_contig671:31375..315251622816743.4249876-CDS-L-elsbetiae_contig671:31375..31525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig671 31376..31525 +
1691683780.4656549-CDS-L-elsbetiae_contig671:31375..315251691683780.4656549-CDS-L-elsbetiae_contig671:31375..31525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig671 31376..31525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig671.15452.1

>prot_L-elsbetiae_contig671.15452.1 ID=prot_L-elsbetiae_contig671.15452.1|Name=mRNA_L-elsbetiae_contig671.15452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MRNELAEALLRVEQLSAQESVLKATIRALETDLKTERQARDLGTGEAAPI
NVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQMTRQEAADVEARIAELE
KTMVGRAGSMVGGAGRKVGGVVGGVVGLVWGGRAAPAESYTEPGIDGTAP
EI*
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mRNA from alignment at L-elsbetiae_contig671:29403..32332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig671.15452.1 ID=mRNA_L-elsbetiae_contig671.15452.1|Name=mRNA_L-elsbetiae_contig671.15452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2930bp|location=Sequence derived from alignment at L-elsbetiae_contig671:29403..32332+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGACACACGGGCGTGGAGGGCCACGTGCGTGCAGAGGTGTCGGAGAT
GAGGAACGAGCTGGCCGAGGCCCTTCTGAGGGTGGAGCAGCTGTCGGCAC
AAGAGTCGGTCCTGAAGGCCACCATCAGGGCGCTAGAAACGGACCTCAAG
ACGGAGAGGCAAGCGCGGTCCGCCCAAAGACGAACGAGCCTACTCGCGAT
CCGACGGCGAAGCATGCGTTTTCGGACGTTATAAATATCGCCACTACAGT
ACCACACGACCACAACACTTCCTTGGCGTTTGTTGAGCGACCACTTGCCA
ACCAAACACAACGCTGTCGTTGCTGTTGTGTGCCAATAAGTACCTGCTTC
AAAGTAATACTTCTAGTGTGCGGATTCGAGACTATATACCTCGGCGGTGA
TGCGTATGGGTTGGGTGCTGCTTTAGACCGCAAGCCAAGCACCAGAGCTT
AGAATTGGCCGCTTGCGGTTCTCGGCGATACATTTGATCCTGTGTTTCCG
GGAAAATATAGCCGCCGGCGCCCAGATCGTCGTGTATTTTCACATGCTTA
GCAAGCACCCCCTGAATTTAAAAGAGGCGTTTTTGTCCTATCTTTTTTGA
CAGGGACCTTGGGACCGGTGAAGCAGCGCCGATAAACGTGGCGTACCTCA
AGTCTGCAGTTGTTCGGTGAGAAGAGGAAGGAAAAGCGCGAGAAAGGGGA
TCGATATCGTCGCCGGCAGCGCCGTGCAAGCAATGAAATTTTGGAGCTCT
TAAGGCACTCAGCCGCAGCGATCCACTCAGTGCATGCACCAAGCAGCCTT
GTACAGCCAGCTGACAGAGGCAGTTTGCCGTGGTGCCCTTTGCTCGGCTG
CAAGCCATGCCATGCCATGCCATTGATCGCATCCATTATGCCCGCCCATT
TTTCCTGGGTGTCAAGCGTCCATGCGCTCCCAAGTAAAAACAGTAAAACA
GAGCGGAGATTAACCCTGTTGCTATGTACCCCTACCCCTATCGTGGTGCA
GTCCGTACTGTTTCGGTGATGCCTGCGAGTGTGAACTAAAGCCCGATTAA
CAACTAGATGGAGGTTATATGTACGTTACATTAGGTCGAGCGAAGAAGCT
GCTCCGCCCGTGTATGATATACACCGTAGCTGGCACCAAGGGTAGATTTT
TCACTCCGCCCACTACTCTACGCCCGTGTTGCTGTGTGGCTGGCTTTCAG
GTACATGTCTACTCGCGATGCCGGTGAGCAGCGCAGCCTTCTCCGAGTTA
TCTCGACCATCTTGCAGATGACGAGGCAAGAGGCCGCCGACGTCGAAGCT
CGAATCGCCGAACTTGAGAAGACTATGGTGAGCGAAAGAAGCCGGTGGCC
CAAATACCATCTCGTTCGATCTTTTGCCTCTTGTCCCCCCACATATTCTG
CATGTACGTATCCTCTCTGTTTTGCTTGGAGGAGGGAAGCTCCGCCATTC
GTAACCGTGGTCAAAAACCCGAACGGTAACGCAGGGTTGATACAGTACGT
GGAGCATAACCGCACGCACGCCAATCGCGGTACGGGATACGCTCAGGTGT
TTTTGAAGTTGCCCAGTACTAGGGGGTGTGAAAGGCTTCACTACATGGAT
GCATGCATATGTGCATACGTAGCGCAAGCGATGTCGTTGTGTTGACGAGC
GAATTGATACGTTGGTGCCGTGCTTGCACCAGCGTGTGGATTATGTCCCG
GATTCCCGTGGCTTTTTTGCGCCGGCCTCTGCCGTCTTCCTCCCAGCCTG
TGGTGAAGGGTGATTCGGCCGTTCCCTCCCCGCGGCCGTGAGTATTGAAC
GCTGCCGGGTGTCAGCGCGTTCCGGTTCAAGATCAGGATCTTCCATGTAC
GCTTGGCCAATGGCCTACGCACATGCAGTCTAGACACCAAGGCTTGGAAT
CCTCCAACCTACGGTAGACCGTGATAAAGCTCGTAATCGATGTTGCTACT
TTCCGTCTGCCTGTGTCTACCAGGTGGGGCGTGCCGGCAGCATGGTAGGG
GGCGCCGGGAGGAAAGTCGGCGGGGTCGTCGGGGGGGTCGTGGGGCTCGT
CTGGGGGGGGAGGGCTGCACCAGCTGAGAGCTACACCGAACCTGGAATCG
ATGGAACGGCCCCAGAGATCTAGTCTAGGCTCTTGAAAATCCAGAATCGT
CGGTTGCCGCCATCGAACTATTTTCTATCCTTGCCTGGTTTTGCCCGAGT
CTCGCCGCGACTGATGTTTAGCTGCTGCAGTAGTTTTTTTGCCGGGAACC
AGCACTGCTGTCTTGATTTAATCCATGTCGAGACATACCTACCTGGCATT
CTTTAGTACCTGGGCCGCCGTATGTTGGAGTTACTACCGGTTACGTTCTA
CGGCATACGTTGCGTTTGTTGCGATCGAAAGCGGCAAGGAATGTTTTGCA
CCGTGGGAGTTGCGGAAAGTGTATCGCGTGCCTCGATGGATGCAGAGAGG
GATGCGGAAAGGGAGGGGCAGGTGCTATAATAGCTTTGTATCTGAACTAT
ATTCAGTCGCACAACCGCCCATCGTGTAGTGCTGTCAGCGAGACACACAA
CTCGACAGAGATAGTGCACACAGACGGGCTGGGTCTGCCTTGTGGACAAA
GTGCCCAGCCGGGTAGAGGCGATGGTCTTGGATATTGAGGGAGAGTTCAT
TTGAAGTTAGTTGGGAAGGAGAGGAGTGAGAGCCGACGGCGCTCCGCCTC
CCTGTACCAGGTGTATGCCTAGCTCTGAACCATGGTCGTAAACTTGCCTT
CGGCGAGATATGCGTCTCCCCGCCAGGGGCTCCCGGAGGTCCCCTCGGGA
GGGCTGCCAGAGGCCGCTCCCCGCGTAGGGGCCCGCCGGAGGCGTTTTTT
TAGCTTATATTGTTGCATTTTTAGTCGAAAAATCACTTCCAAGTTATGTG
TTGGGATAAACCAAAGCGCTATTGATGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig671:29403..32332+

>mRNA_L-elsbetiae_contig671.15452.1 ID=mRNA_L-elsbetiae_contig671.15452.1|Name=mRNA_L-elsbetiae_contig671.15452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig671:29403..32332+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGAACGAGCTGGCCGAGGCCCTTCTGAGGGTGGAGCAGCTGTCGGC
ACAAGAGTCGGTCCTGAAGGCCACCATCAGGGCGCTAGAAACGGACCTCA
AGACGGAGAGGCAAGCGCGATGAGGAACGAGCTGGCCGAGGCCCTTCTGA
GGGTGGAGCAGCTGTCGGCACAAGAGTCGGTCCTGAAGGCCACCATCAGG
GCGCTAGAAACGGACCTCAAGACGGAGAGGCAAGCGCGGGACCTTGGGAC
CGGTGAAGCAGCGCCGATAAACGTGGCGTACCTCAAGTCTGCAGTTGTTC
GGGACCTTGGGACCGGTGAAGCAGCGCCGATAAACGTGGCGTACCTCAAG
TCTGCAGTTGTTCGGTACATGTCTACTCGCGATGCCGGTGAGCAGCGCAG
CCTTCTCCGAGTTATCTCGACCATCTTGCAGATGACGAGGCAAGAGGCCG
CCGACGTCGAAGCTCGAATCGCCGAACTTGAGAAGACTATGGTACATGTC
TACTCGCGATGCCGGTGAGCAGCGCAGCCTTCTCCGAGTTATCTCGACCA
TCTTGCAGATGACGAGGCAAGAGGCCGCCGACGTCGAAGCTCGAATCGCC
GAACTTGAGAAGACTATGGTGGGGCGTGCCGGCAGCATGGTAGGGGGCGC
CGGGAGGAAAGTCGGCGGGGTCGTCGGGGGGGTCGTGGGGCTCGTCTGGG
GGGGGAGGGCTGCACCAGCTGAGAGCTACACCGAACCTGGAATCGATGGA
ACGGCCCCAGAGATCTAGGTGGGGCGTGCCGGCAGCATGGTAGGGGGCGC
CGGGAGGAAAGTCGGCGGGGTCGTCGGGGGGGTCGTGGGGCTCGTCTGGG
GGGGGAGGGCTGCACCAGCTGAGAGCTACACCGAACCTGGAATCGATGGA
ACGGCCCCAGAGATCTAG
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