mRNA_L-elsbetiae_contig67.15435.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig67.15435.1
Unique NamemRNA_L-elsbetiae_contig67.15435.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig67.15435.1 vs. uniprot
Match: A0A6H5K415_9PHAE (DUF4042 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K415_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 1.300e-65
Identity = 115/138 (83.33%), Postives = 119/138 (86.23%), Query Frame = 1 
Query:   43 KLWEDLVQKHLQRALEDPYHGVRAVACSCHACLLNSDWEAFSCRERGRCLDRVLAATRDRAAGVNILACRVVAGVMTMAGQDGAARWCRNPEFLGRCAARLQEMMEDPKATIRAQAMLAVGNLSCSLHGIRSRRPPTP 456
            K+W DLVQKHLQRALEDPYHGVRAVACSCHA LL SDWEAFS  ER RCL RVLAATRDRAAGVNILACRVVAGVMTMAG++GAA WCR+PEFL RCAARLQEMMED KA      MLAVGNLSCSLHGIRSRR   P
Sbjct: 1004 KVWRDLVQKHLQRALEDPYHGVRAVACSCHASLLKSDWEAFSDPERDRCLGRVLAATRDRAAGVNILACRVVAGVMTMAGEEGAAAWCRDPEFLDRCAARLQEMMEDTKA------MLAVGNLSCSLHGIRSRRRSLP 1135
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BLAST of mRNA_L-elsbetiae_contig67.15435.1 vs. uniprot
Match: D7FH12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH12_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 2.100e-57
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 1 
Query:   37 GGKLWEDLVQKHLQRALEDPYHGVRAVACSCHACLLNSDWEAFSCRERGRCLDRVLAATRDRAAGVNILACRVVAGVMTMAGQDGAARWCRNPEFLGRCAARLQEMMEDPK 369
            GGK+W DLVQKHLQRALEDPYHGVRAVACSCHA LL SDWEAFS RER RCL RVLAATRDRAAGVNILACRVVAGVMTMAGQ+GAA WCR+PEFL RCAARLQEMMED K
Sbjct:  922 GGKVWRDLVQKHLQRALEDPYHGVRAVACSCHASLLKSDWEAFSDRERERCLGRVLAATRDRAAGVNILACRVVAGVMTMAGQEGAAAWCRDPEFLHRCAARLQEMMEDTK 1032
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig67.15435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K415_9PHAE1.300e-6583.33DUF4042 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FH12_ECTSI2.100e-5789.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig67contigL-elsbetiae_contig67:8295..9505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size476
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig67.15435.1prot_L-elsbetiae_contig67.15435.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig67 8295..9505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.5797381-CDS-L-elsbetiae_contig67:8294..83991622816741.5797381-CDS-L-elsbetiae_contig67:8294..8399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 8295..8399 -
1691683779.1366062-CDS-L-elsbetiae_contig67:8294..83991691683779.1366062-CDS-L-elsbetiae_contig67:8294..8399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 8295..8399 -
1622816741.5948708-CDS-L-elsbetiae_contig67:8825..89651622816741.5948708-CDS-L-elsbetiae_contig67:8825..8965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 8826..8965 -
1691683779.1483486-CDS-L-elsbetiae_contig67:8825..89651691683779.1483486-CDS-L-elsbetiae_contig67:8825..8965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 8826..8965 -
1622816741.6082997-CDS-L-elsbetiae_contig67:9276..95051622816741.6082997-CDS-L-elsbetiae_contig67:9276..9505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 9277..9505 -
1691683779.1576421-CDS-L-elsbetiae_contig67:9276..95051691683779.1576421-CDS-L-elsbetiae_contig67:9276..9505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 9277..9505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig67.15435.1

>prot_L-elsbetiae_contig67.15435.1 ID=prot_L-elsbetiae_contig67.15435.1|Name=mRNA_L-elsbetiae_contig67.15435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MAAKGGGVGGGSGGKLWEDLVQKHLQRALEDPYHGVRAVACSCHACLLNS
DWEAFSCRERGRCLDRVLAATRDRAAGVNILACRVVAGVMTMAGQDGAAR
WCRNPEFLGRCAARLQEMMEDPKATIRAQAMLAVGNLSCSLHGIRSRRPP
TPSSSALD
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mRNA from alignment at L-elsbetiae_contig67:8295..9505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig67.15435.1 ID=mRNA_L-elsbetiae_contig67.15435.1|Name=mRNA_L-elsbetiae_contig67.15435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1211bp|location=Sequence derived from alignment at L-elsbetiae_contig67:8295..9505- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCCAAAGGCGGCGGCGTTGGTGGCGGCAGCGGTGGCAAGCTGTG
GGAGGACCTAGTTCAGAAGCACCTGCAGCGGGCGCTGGAGGACCCGTACC
ACGGCGTCCGGGCGGTGGCGTGTTCGTGCCACGCGTGCCTTCTGAACTCC
GACTGGGAAGCGTTCTCTTGTCGGGAGCGAGGTCGTTGCCTGGACAGGGT
GCTCGCCGCGACGAGGGACAGGGCCGCCGGTAGGTGGGGCCCCGTGGGTG
GCGGTTGCGGGGGGTTTCAGGGCTGTGTGATTGCGCTTTCGAACCCCGGT
TTGTTTTTTACCTTTGGTTTCCCGGTCGCGTGGCGTGGCGTGGCGTGGCG
TGGCAGTCTTGTCGGGGGTGGGGTGCAAATTATATGCTTCACTCGCTCTC
TGTACGATATTCCCCCCCCCCCCCCCACTCCCCCGAGGAATTCCTTCGAT
GGTTTTAAAGTTTTATAAAGTCTCGCCGTTCTGTTTGAGTCATGTTGTCC
GATTCCTCGGTTTTATTTTGTTTTGTTTTGTTTTCGGAAGGTGTCAATAT
CCTGGCCTGCAGAGTGGTAGCCGGTGTCATGACGATGGCTGGGCAGGACG
GCGCGGCGAGGTGGTGCCGGAACCCCGAGTTCCTCGGCCGCTGCGCTGCA
AGGCTGCAGGAGATGATGGAGGACCCAAAGGTGGGCACGACGACGTGTTG
CGGACCCAGGACACGCGATAACTAAACATACGCTTCGCTTGACGATATGG
TGGTGTGGCGGCAATAGCAAGCCATCGTCCTGTTTCTGTGTCAGGTCTCT
GCGGTGGGGTAGAGAAGAGCTGAGCAGAGTGGAGGAATGAGCGTCCAGTG
TGTGCTTTGGCCCTTAGAGGCCTTCTTGCGTTGCCCGACCCTTATAAATA
CAGCAGCGTTGACTTTTTTCACAGGCACCAACTATACTGCTGCCGCCTGC
TGCATCACCGAGGCGTTAATGAGAAGCCCCCCCCCCCCCCCCCTCACCCC
TCCTACGTTTCTCCCTGCCCGGCGGCAACTTTTACCGGTGCTCTCCCTAA
AATCCAACAACAACACGCCAAAACCGACGACGCCAAACAAAACTGGTTGG
CGCCAGGCCACCATCCGAGCACAAGCCATGCTGGCCGTGGGTAACCTCTC
GTGCTCGCTCCACGGCATACGGTCGAGGCGCCCCCCGACGCCCTCTTCTT
CCGCGTTGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig67:8295..9505-

>mRNA_L-elsbetiae_contig67.15435.1 ID=mRNA_L-elsbetiae_contig67.15435.1|Name=mRNA_L-elsbetiae_contig67.15435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig67:8295..9505- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCCAAAGGCGGCGGCGTTGGTGGCGGCAGCGGTGGCAAGCTGTG
GGAGGACCTAGTTCAGAAGCACCTGCAGCGGGCGCTGGAGGACCCGTACC
ACGGCGTCCGGGCGGTGGCGTGTTCGTGCCACGCGTGCCTTCTGAACTCC
GACTGGGAAGCGTTCTCTTGTCGGGAGCGAGGTCGTTGCCTGGACAGGGT
GCTCGCCGCGACGAGGGACAGGGCCGCCGATGGCGGCCAAAGGCGGCGGC
GTTGGTGGCGGCAGCGGTGGCAAGCTGTGGGAGGACCTAGTTCAGAAGCA
CCTGCAGCGGGCGCTGGAGGACCCGTACCACGGCGTCCGGGCGGTGGCGT
GTTCGTGCCACGCGTGCCTTCTGAACTCCGACTGGGAAGCGTTCTCTTGT
CGGGAGCGAGGTCGTTGCCTGGACAGGGTGCTCGCCGCGACGAGGGACAG
GGCCGCCGGTGTCAATATCCTGGCCTGCAGAGTGGTAGCCGGTGTCATGA
CGATGGCTGGGCAGGACGGCGCGGCGAGGTGGTGCCGGAACCCCGAGTTC
CTCGGCCGCTGCGCTGCAAGGCTGCAGGAGATGATGGAGGACCCAAAGGT
GTCAATATCCTGGCCTGCAGAGTGGTAGCCGGTGTCATGACGATGGCTGG
GCAGGACGGCGCGGCGAGGTGGTGCCGGAACCCCGAGTTCCTCGGCCGCT
GCGCTGCAAGGCTGCAGGAGATGATGGAGGACCCAAAGGCCACCATCCGA
GCACAAGCCATGCTGGCCGTGGGTAACCTCTCGTGCTCGCTCCACGGCAT
ACGGTCGAGGCGCCCCCCGACGCCCTCTTCTTCCGCGTTGGACGCCACCA
TCCGAGCACAAGCCATGCTGGCCGTGGGTAACCTCTCGTGCTCGCTCCAC
GGCATACGGTCGAGGCGCCCCCCGACGCCCTCTTCTTCCGCGTTGGAC
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