mRNA_L-elsbetiae_contig6642.15372.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 171 bits (434), Expect = 1.640e-48 Identity = 77/92 (83.70%), Postives = 88/92 (95.65%), Query Frame = 2 Query: 2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277 GDILNSEIYGMYYGHYS+GHQGGVW +N MRDN+QYGFDPHDDSD LTI++N V+GNGNHGIIASKRCNN+KI+NNEV++GGE+AVGIFLHR Sbjct: 384 GDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHR 475
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 160 bits (405), Expect = 7.740e-44 Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = 2 Query: 2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277 GDI++S+IYGMYYGHYSFGH GG+WT N M DN QYGFDPHDDSD L IA+NTV+GNGNHGIIASKRCNN+KI++N V++GGE AVGIFLHR Sbjct: 591 GDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHR 682
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 159 bits (403), Expect = 1.610e-43 Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 2 Query: 2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277 GDI++S IYGMYYGHYSFGH GG+WT N M DN QYGFDPHDDSD L IA+NTV+GNGNHGIIASKRCNN+KI++N V++GGE AVGIFLHR Sbjct: 652 GDIIDSNIYGMYYGHYSFGHDGGIWTGNQMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHR 743
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 148 bits (374), Expect = 6.080e-41 Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 2 Query: 2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277 GD+ S+I+ MYYG YSFGHQGGVWTNN M DN QYGFDPHDDSDYL IA N V+ N NHGIIASKRCNN+KIY+NEV++GG +A GIFLHR Sbjct: 196 GDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHR 287
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 149 bits (376), Expect = 7.280e-40 Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 2 Query: 2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277 GD+ S+I+ +YYGHYS+GHQGGVWTNN M DN QYGFDPHDDSDYLTIA+N V+ N NHGIIASKRCNN+KI+ NEV +GG A GIFLHR Sbjct: 636 GDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHR 727
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 132 bits (333), Expect = 1.610e-35 Identity = 65/92 (70.65%), Postives = 70/92 (76.09%), Query Frame = 2 Query: 2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277 GDI NS I+ MYYG YS+GHQGGVWTNN M DN QYGFDPHDDSDYLTIA ASKRCNN++IYNNEV +GG EAVGIFLHR Sbjct: 164 GDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHR 255
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 132 bits (333), Expect = 4.710e-34 Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 2 Query: 2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIY 223 GDI SEIYGMYYG YS+GHQGGVWT+N MRDN+ YGFDPHDDSD LTIA NTV+GNGNHGIIASKRCNN++IY Sbjct: 600 GDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDPHDDSDDLTIAGNTVYGNGNHGIIASKRCNNVEIY 673
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 126 bits (317), Expect = 2.960e-33 Identity = 61/92 (66.30%), Postives = 70/92 (76.09%), Query Frame = 2 Query: 2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277 GD++ S+I+ +YYGHYS+GHQGGVWTNN M DN QYGFDPHDDSDYLT IIASKRCNN+KI+ NEV +GG AVGIFLHR Sbjct: 193 GDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTR------------IIASKRCNNVKIFENEVRDGGAAAVGIFLHR 272
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 122 bits (305), Expect = 7.920e-31 Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 2 Query: 2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277 GDI NS+I+ MYYGHYS+GHQGGVWTNN M DN QY +A+N V+ N NHGIIASKRCNN+KIY+N+V +GG +AVGIFLHR Sbjct: 218 GDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHR 297
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 120 bits (301), Expect = 4.900e-30 Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 2 Query: 2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277 G+++ S+I+ YYG YS+GHQGGVW NN M DN QYGFDPHDDSDYLT IIASKRCNN++IYNNEV++GG A GIFLHR Sbjct: 273 GNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHR 352 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6642.15372.1 >prot_L-elsbetiae_contig6642.15372.1 ID=prot_L-elsbetiae_contig6642.15372.1|Name=mRNA_L-elsbetiae_contig6642.15372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp MYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHback to top mRNA from alignment at L-elsbetiae_contig6642:8432..9149+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6642.15372.1 ID=mRNA_L-elsbetiae_contig6642.15372.1|Name=mRNA_L-elsbetiae_contig6642.15372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=718bp|location=Sequence derived from alignment at L-elsbetiae_contig6642:8432..9149+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6642:8432..9149+ >mRNA_L-elsbetiae_contig6642.15372.1 ID=mRNA_L-elsbetiae_contig6642.15372.1|Name=mRNA_L-elsbetiae_contig6642.15372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig6642:8432..9149+ (Laminarionema elsbetiae ELsaHSoW15)back to top |