mRNA_L-elsbetiae_contig6642.15372.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6642.15372.1
Unique NamemRNA_L-elsbetiae_contig6642.15372.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.640e-48
Identity = 77/92 (83.70%), Postives = 88/92 (95.65%), Query Frame = 2
Query:    2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277
            GDILNSEIYGMYYGHYS+GHQGGVW +N MRDN+QYGFDPHDDSD LTI++N V+GNGNHGIIASKRCNN+KI+NNEV++GGE+AVGIFLHR
Sbjct:  384 GDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHR 475          
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 7.740e-44
Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = 2
Query:    2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277
            GDI++S+IYGMYYGHYSFGH GG+WT N M DN QYGFDPHDDSD L IA+NTV+GNGNHGIIASKRCNN+KI++N V++GGE AVGIFLHR
Sbjct:  591 GDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHR 682          
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.610e-43
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 2
Query:    2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277
            GDI++S IYGMYYGHYSFGH GG+WT N M DN QYGFDPHDDSD L IA+NTV+GNGNHGIIASKRCNN+KI++N V++GGE AVGIFLHR
Sbjct:  652 GDIIDSNIYGMYYGHYSFGHDGGIWTGNQMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHR 743          
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 6.080e-41
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 2
Query:    2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277
            GD+  S+I+ MYYG YSFGHQGGVWTNN M DN QYGFDPHDDSDYL IA N V+ N NHGIIASKRCNN+KIY+NEV++GG +A GIFLHR
Sbjct:  196 GDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHR 287          
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.280e-40
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 2
Query:    2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277
            GD+  S+I+ +YYGHYS+GHQGGVWTNN M DN QYGFDPHDDSDYLTIA+N V+ N NHGIIASKRCNN+KI+ NEV +GG  A GIFLHR
Sbjct:  636 GDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHR 727          
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.610e-35
Identity = 65/92 (70.65%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277
            GDI NS I+ MYYG YS+GHQGGVWTNN M DN QYGFDPHDDSDYLTIA             ASKRCNN++IYNNEV +GG EAVGIFLHR
Sbjct:  164 GDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHR 255          
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.710e-34
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 2
Query:    2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIY 223
            GDI  SEIYGMYYG YS+GHQGGVWT+N MRDN+ YGFDPHDDSD LTIA NTV+GNGNHGIIASKRCNN++IY
Sbjct:  600 GDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDPHDDSDDLTIAGNTVYGNGNHGIIASKRCNNVEIY 673          
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.960e-33
Identity = 61/92 (66.30%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277
            GD++ S+I+ +YYGHYS+GHQGGVWTNN M DN QYGFDPHDDSDYLT             IIASKRCNN+KI+ NEV +GG  AVGIFLHR
Sbjct:  193 GDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTR------------IIASKRCNNVKIFENEVRDGGAAAVGIFLHR 272          
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 7.920e-31
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277
            GDI NS+I+ MYYGHYS+GHQGGVWTNN M DN QY            +A+N V+ N NHGIIASKRCNN+KIY+N+V +GG +AVGIFLHR
Sbjct:  218 GDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHR 297          
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 4.900e-30
Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 2
Query:    2 GDILNSEIYGMYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNHGIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR 277
            G+++ S+I+  YYG YS+GHQGGVW NN M DN QYGFDPHDDSDYLT             IIASKRCNN++IYNNEV++GG  A GIFLHR
Sbjct:  273 GNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHR 352          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6642.15372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8D9_ECTSI1.640e-4883.70Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JNF5_9PHAE7.740e-4478.26MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LDB5_ECTSI1.610e-4378.26Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI6.080e-4175.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LC73_ECTSI7.280e-4073.91Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D7FIU4_ECTSI1.610e-3570.65Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FWE8_ECTSI4.710e-3482.43Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5KWQ2_9PHAE2.960e-3366.30MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JGU8_9PHAE7.920e-3164.13MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LRM4_ECTSI4.900e-3063.04Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6642contigL-elsbetiae_contig6642:8432..9149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue6.4e-35
Seed eggNOG ortholog2880.D7G8D9
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size277
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6642.15372.1prot_L-elsbetiae_contig6642.15372.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6642 8675..9149 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.7483456-UTR-L-elsbetiae_contig6642:8431..84601622816735.7483456-UTR-L-elsbetiae_contig6642:8431..8460Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6642 8432..8460 +
1691683775.0799394-UTR-L-elsbetiae_contig6642:8431..84601691683775.0799394-UTR-L-elsbetiae_contig6642:8431..8460Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6642 8432..8460 +
1622816735.759017-UTR-L-elsbetiae_contig6642:8672..86741622816735.759017-UTR-L-elsbetiae_contig6642:8672..8674Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6642 8673..8674 +
1691683775.0916378-UTR-L-elsbetiae_contig6642:8672..86741691683775.0916378-UTR-L-elsbetiae_contig6642:8672..8674Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6642 8673..8674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.7703006-CDS-L-elsbetiae_contig6642:8674..88251622816735.7703006-CDS-L-elsbetiae_contig6642:8674..8825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6642 8675..8825 +
1691683775.1015067-CDS-L-elsbetiae_contig6642:8674..88251691683775.1015067-CDS-L-elsbetiae_contig6642:8674..8825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6642 8675..8825 +
1622816735.781225-CDS-L-elsbetiae_contig6642:9054..91491622816735.781225-CDS-L-elsbetiae_contig6642:9054..9149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6642 9055..9149 +
1691683775.1113703-CDS-L-elsbetiae_contig6642:9054..91491691683775.1113703-CDS-L-elsbetiae_contig6642:9054..9149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6642 9055..9149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6642.15372.1

>prot_L-elsbetiae_contig6642.15372.1 ID=prot_L-elsbetiae_contig6642.15372.1|Name=mRNA_L-elsbetiae_contig6642.15372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MYYGHYSFGHQGGVWTNNTMRDNVQYGFDPHDDSDYLTIAHNTVFGNGNH
GIIASKRCNNIKIYNNEVFNGGEEAVGIFLHR
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mRNA from alignment at L-elsbetiae_contig6642:8432..9149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6642.15372.1 ID=mRNA_L-elsbetiae_contig6642.15372.1|Name=mRNA_L-elsbetiae_contig6642.15372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=718bp|location=Sequence derived from alignment at L-elsbetiae_contig6642:8432..9149+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGACATCCTCAACTCGGAGATCTACGGTACGTCTCTCTCGGCCGCTA TCTACATACACAATAAATACATAGGAACAGCGCGCATGTTCAGTAAACGT AACCGTATTTTCAATTTTAGTCGTGGCTAGAGTGCTGAATTCCGCTGTCC AAGGAAAAGTCGTCTCAAGTTCATCAATCATGACTTTTGGGACGATAAAT CAACAAAGCGGGCCGTTTGTCTTGCGATTGGCGCTGCACAGGCATGTACT ACGGGCACTACTCGTTCGGTCACCAGGGCGGTGTCTGGACCAACAACACC ATGCGCGACAACGTGCAATACGGCTTCGACCCGCACGACGACAGCGACTA CCTCACCATCGCCCACAACACCGTTTTCGGGAACGGCAACCACGGTAAAG GAGAAACACGCCTGCTTATTCTCGGAACCTAAGCGATATTTCTCGACAGC AGAACGGGCGCCAACACCGACTGTCCATGAGACAACTTCCCCGGCCAATC CCAAGCATTAACCATTCACGAGCAGTAGAAACAGCTGCAGCAACGTGAGC AGTCCGAAAGCAACATTGCAAATGCGCACATTCCTACCTCAACGCCGCAA GCCAACTCTTTACCGAACCACAGGCATCATCGCCTCCAAACGCTGCAACA ACATCAAGATCTACAACAACGAGGTCTTCAACGGAGGTGAAGAAGCCGTG GGAATCTTCCTCCACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6642:8432..9149+

>mRNA_L-elsbetiae_contig6642.15372.1 ID=mRNA_L-elsbetiae_contig6642.15372.1|Name=mRNA_L-elsbetiae_contig6642.15372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig6642:8432..9149+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTACGGGCACTACTCGTTCGGTCACCAGGGCGGTGTCTGGACCAA
CAACACCATGCGCGACAACGTGCAATACGGCTTCGACCCGCACGACGACA
GCGACTACCTCACCATCGCCCACAACACCGTTTTCGGGAACGGCAACCAC
GATGTACTACGGGCACTACTCGTTCGGTCACCAGGGCGGTGTCTGGACCA
ACAACACCATGCGCGACAACGTGCAATACGGCTTCGACCCGCACGACGAC
AGCGACTACCTCACCATCGCCCACAACACCGTTTTCGGGAACGGCAACCA
CGGCATCATCGCCTCCAAACGCTGCAACAACATCAAGATCTACAACAACG
AGGTCTTCAACGGAGGTGAAGAAGCCGTGGGAATCTTCCTCCACCGCGCA
TCATCGCCTCCAAACGCTGCAACAACATCAAGATCTACAACAACGAGGTC
TTCAACGGAGGTGAAGAAGCCGTGGGAATCTTCCTCCACCGC
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