mRNA_L-elsbetiae_contig6639.15366.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6639.15366.1
Unique NamemRNA_L-elsbetiae_contig6639.15366.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 6.140e-112
Identity = 175/219 (79.91%), Postives = 182/219 (83.11%), Query Frame = 3 
Query:   51 STQLFXXXXXXXXXXXXXXXXXMTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            +TQLF                 M VRS AP+SS   LKM SAGS YV TLPGAPF DGKIFDPL LS+GA P DIKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLK+ Y PGDLGFDPL LKP+ EA L  M+TKELNNGRLAMIGIAGMLVQELINPADILG
Sbjct:    3 ATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKM-SAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 2.970e-105
Identity = 167/227 (73.57%), Postives = 180/227 (79.30%), Query Frame = 3 
Query:   27 SSKMTLGTSTQLFXXXXXXXXXXXXXXXXXMTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            SS M LGT+  L                  M VRS AP+SS   LKM SAGS YV TLPGAPF DGKIFDPL LS+GA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI  A+  PS VTGEGGL+D YSPGDLGFDPL LKPK +A L  MQTKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct:    4 SSNMFLGTAATLIASSTAFVAP--------MAVRSAAPASSASALKM-SAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 1.080e-103
Identity = 160/196 (81.63%), Postives = 172/196 (87.76%), Query Frame = 3 
Query:  117 MTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 695
            + VRS AP+S+   LKM SAGS YV TLPGAPFSDGKIFDPL LS+GAAPGDIKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+N  DIL
Sbjct:   25 VAVRSAAPASAASALKM-SAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 2.170e-96
Identity = 141/161 (87.58%), Postives = 151/161 (93.79%), Query Frame = 3 
Query:  216 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            +IFDPLGLS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 6.930e-94
Identity = 142/161 (88.20%), Postives = 151/161 (93.79%), Query Frame = 3 
Query:  216 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            +IFDPLGLS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 1.590e-91
Identity = 151/227 (66.52%), Postives = 173/227 (76.21%), Query Frame = 3 
Query:   27 SSKMTLGTSTQLFXXXXXXXXXXXXXXXXXMTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            SS M LGT+  L                  M VRS AP+SS   LKM SAG+ Y+ TLPGA   +GKIFD L L++GA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI  A+  PS VTGEGGL+D YSPGDLGFDP  +KPK +A L  MQ KELNNGRLAMIGI GMLVQEL+N  DILG
Sbjct:    4 SSNMFLGTAATLIASSAAFVTP--------MAVRSAAPASSASALKM-SAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 4.540e-86
Identity = 130/160 (81.25%), Postives = 140/160 (87.50%), Query Frame = 3 
Query:  216 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 695
            KIFDPLGL++GA  GDIK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTI  A+  PS VTGEGGL+D YSPGDLGFDPL LKP  +  L TMQTKELNNGRLAMIGIAG LVQEL+NP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 7.670e-83
Identity = 141/196 (71.94%), Postives = 147/196 (75.00%), Query Frame = 3 
Query:  117 MTVRSVA--PSSSLKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            M VRSV   PSS     SAGS YV TLPGAPFSDGKIFDPLGLS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE                            FW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   25 MAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.700e-80
Identity = 123/193 (63.73%), Postives = 150/193 (77.72%), Query Frame = 3 
Query:  120 TVRSVAPSSSLKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            T  S  P+S+    SAGS YV TLPGAPF+DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FW  +LL +A++EY  I   F     VTGEGG++  Y PGDLGFDPLGL P+ E +L  M+TKELN+GRLAMIGI GM+VQEL+ P  I G
Sbjct:   79 TTLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Match: A0A6H5JAU1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU1_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 6.750e-66
Identity = 112/161 (69.57%), Postives = 121/161 (75.16%), Query Frame = 3 
Query:  216 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            KI DPLGLS+GAAPGDIKKWRE EIKHGRVAMLASLGV+VAE                            FWVFSLLGMAFIEYNTI+TAF+TPSA+TGEGGLK+ Y PGDLGFDPL LKP   A L  M+TKELNNGRLAMIGIAGM+ QEL+NPADILG
Sbjct:   23 KILDPLGLSDGAAPGDIKKWRETEIKHGRVAMLASLGVIVAE----------------------------FWVFSLLGMAFIEYNTIITAFDTPSALTGEGGLKEDYMPGDLGFDPLNLKPDDVAALDVMKTKELNNGRLAMIGIAGMMAQELVNPADILG 155
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6639.15366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI6.140e-11279.91Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI2.970e-10573.57Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI1.080e-10381.63Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S5_ECTSI2.170e-9687.58Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE6.930e-9488.20LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7S0_ECTSI1.590e-9166.52Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI4.540e-8681.25Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE7.670e-8371.94LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G5B4_ECTSI1.700e-8063.73Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JAU1_9PHAE6.750e-6669.57LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6639contigL-elsbetiae_contig6639:5916..8298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.5
Seed ortholog evalue5.3e-100
Seed eggNOG ortholog2880.D7G7S3
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons4
Model size1173
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6639.15366.1prot_L-elsbetiae_contig6639.15366.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6639 5951..7826 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.1483636-UTR-L-elsbetiae_contig6639:5915..59501622816735.1483636-UTR-L-elsbetiae_contig6639:5915..5950Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6639 5916..5950 +
1691683774.6251125-UTR-L-elsbetiae_contig6639:5915..59501691683774.6251125-UTR-L-elsbetiae_contig6639:5915..5950Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6639 5916..5950 +
1622816735.213977-UTR-L-elsbetiae_contig6639:7826..82981622816735.213977-UTR-L-elsbetiae_contig6639:7826..8298Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6639 7827..8298 +
1691683774.6818724-UTR-L-elsbetiae_contig6639:7826..82981691683774.6818724-UTR-L-elsbetiae_contig6639:7826..8298Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6639 7827..8298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.158668-CDS-L-elsbetiae_contig6639:5950..61331622816735.158668-CDS-L-elsbetiae_contig6639:5950..6133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6639 5951..6133 +
1691683774.6396222-CDS-L-elsbetiae_contig6639:5950..61331691683774.6396222-CDS-L-elsbetiae_contig6639:5950..6133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6639 5951..6133 +
1622816735.177641-CDS-L-elsbetiae_contig6639:6473..65961622816735.177641-CDS-L-elsbetiae_contig6639:6473..6596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6639 6474..6596 +
1691683774.650841-CDS-L-elsbetiae_contig6639:6473..65961691683774.650841-CDS-L-elsbetiae_contig6639:6473..6596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6639 6474..6596 +
1622816735.187906-CDS-L-elsbetiae_contig6639:7125..72091622816735.187906-CDS-L-elsbetiae_contig6639:7125..7209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6639 7126..7209 +
1691683774.660903-CDS-L-elsbetiae_contig6639:7125..72091691683774.660903-CDS-L-elsbetiae_contig6639:7125..7209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6639 7126..7209 +
1622816735.1996737-CDS-L-elsbetiae_contig6639:7550..78261622816735.1996737-CDS-L-elsbetiae_contig6639:7550..7826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6639 7551..7826 +
1691683774.6716523-CDS-L-elsbetiae_contig6639:7550..78261691683774.6716523-CDS-L-elsbetiae_contig6639:7550..7826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6639 7551..7826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6639.15366.1

>prot_L-elsbetiae_contig6639.15366.1 ID=prot_L-elsbetiae_contig6639.15366.1|Name=mRNA_L-elsbetiae_contig6639.15366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
MTLGTSTQLFLGTAATLIASSTAFVAPMTVRSVAPSSSLKMQSAGSAYVE
TLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLV
AEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTA
FETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRL
AMIGIAGMLVQELINPADILG*
back to top

mRNA from alignment at L-elsbetiae_contig6639:5916..8298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6639.15366.1 ID=mRNA_L-elsbetiae_contig6639.15366.1|Name=mRNA_L-elsbetiae_contig6639.15366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2383bp|location=Sequence derived from alignment at L-elsbetiae_contig6639:5916..8298+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTCTCCTCTCTCCCCACCCACACTCAAGCAAGATGACTCTCGGCACC
TCCACCCAGTTGTTCCTCGGCACCGCCGCCACCCTCATCGCCTCGTCTAC
GGCTTTCGTCGCCCCCATGACCGTGCGATCCGTGGCACCTTCGTCGAGCC
TCAAGATGCAGAGCGCTGGCTCCGCGTACGTCGAGACCCTGCCTGGCGCT
CCCTTCTCTGACGGAAAGGTGAACACAGCAGTCATCTGAGTGCTGAGGTT
GCGCATATCGTCCGGCTTTTTCAACGAGAGCACTCCATGTGTGTGGGTGC
AACACACCAACCGCGACGCACCACCTGCAAACGGTTCGCTGGCTGCATAG
CAGATGGGTGTAGCTCAGCTCTCTCTACGTTAGACTAGATATAGATCTTC
GAACGCGAGCACAGCTACGGCATCTGCCACGTCGTAAGTAAGCTGCTACA
AATAATGTACCCTCCTCACCCCTCATCCCCAGTTCTAACTTGTCTCCACA
CACCTGCTGCACCTACCCCTGCACACATGCACGCTGTCCCATCCGCTTCC
CATCGCAGATCTTCGACCCGCTCGGCCTGTCGGAGGGCGCGGCTCCCGGC
GACATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGACGCGTAGCCAT
GCTCGCATCGCTCGGTGTTCTCGTCGCAGAGGTGAGAAGAAACGGGAATC
ACTACCTTCGCCTCTGTGCGCTGTTGCGCGAGCAGCAAATACCGCGATGA
CGTTCCATGTGTGTACGCATGTTCTCATAAGTATGAAGTGGTCGATGTGT
GTTTCACCACTACCTCCCCCTGAAATGTCTGGCCGGTTTACGGGGGCCTG
AGCCAGCCACAAGACAAAACATGGCCGCAAACACACACACCTCTAGATCG
TTTGGTTCGTTGCTGACACTGCCGCTTTCCAGATGCACACAGCAGTGACT
CCTTGTATATAGTAAAGCCACATCCTGGGGTTCATGCCAACCGCCGGGGT
GGTTGCGATTTTAGTTTTTGTATTGTAGTGGCAGGTTGACTACGCAAGGC
AGCTGTGTACTCGACTCCGACTCCCCCCCAAAAACAACAAAACTGCGTGC
AGTCACGAGCGCTTGCCAAGCCCTACTGTTTGCTCTGGTTTCGGTTTGCC
GTTTCCTGTCTACCAAAACGTAACCTGACCCTGTCCTTTCGCTTATTTTT
CTCTTTGCAGGAGTACCACCCGTTCTTCATGGGCCCTGACTACATCGGCC
CCGCCGTGGACCACTTCCAGGAGATCTCCGCCCAGTACCCCGAGGTGATG
ATTGTCTTTTTTTGCCAGGTCTTCACAGGCACACGCATGCACATGTACCA
AATAGTTGTGCTGCATATCTAGATTAAAGGAGTACGCGCATACTCTGCTG
CCCTCGTGCGTAAAAACTACGGCTTGTTAACTTTCGGATCAGCAGGAGGT
GCGCCCGTATCTCTATTTCCGCACACGTGGAAGGACTCAACAGCAGTGCA
GTGGTTGCGACTTCATACTGTAAGCGATGCTGTTGTTCCACCTTTGTCGT
GTTGTACCCCTGCGTCGCATCTGGTGTTATCACTCAACTCACACTTGTAC
GTCCACCCACCTCCTTGCTTCGAAACACATAACAGTTCTGGGTGTTCTCC
CTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACCGCGTTCGA
GACGCCTAGCGCCGTGACCGGCGAGGGCGGCCTCAAGGACAGCTACAGCC
CGGGAGACCTCGGCTTCGACCCGCTCGGCCTCAAGCCCAAGACCGAGGCG
GACCTCGTGACGATGCAGACCAAGGAGCTCAACAACGGCCGCCTGGCCAT
GATCGGTATCGCCGGCATGTTGGTGCAGGAGCTCATCAACCCGGCCGACA
TCCTCGGCTAACTCGATGATTTGATGATGTGCAATCCCGCGACGAGCATC
GGCATTGGTGTCTAGAAAGATGGATGGGGGGGCTTCACTGAAGTTGGAAT
TGTGTAAAGTAGGGATGCTCCGATCGAGGGGATAACGGTTGGTGAAGATT
CGGGTTCTATGACGGCAGCGTACGCTTGATTTCGTGTAGCTTGTTTGCCA
CCGGGGTCTTGAAGCAGGGCAAACGTTGTCGGTGGCGTTGTTGATTTTAT
TAGTGTTGTGACTTTTACTTCGTGAGATTTTGTTTTGTGGCTTCAATGAA
CAACGATGCATTTTCGGACTTGGCGTTCAGTCGATGTTAGTTATCGATTA
TCGTCGTCGCTGGACCCGTGCTTGATTGACAGCATACCTGGCGAGCGGGG
TCTTGATCTTGTTCAATGTGGCAGCGTGCCAGCGGCAGCGCGTTGTGCCG
CACCCGATTATGTCTGGTCTGGCCTTATTCCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6639:5916..8298+

>mRNA_L-elsbetiae_contig6639.15366.1 ID=mRNA_L-elsbetiae_contig6639.15366.1|Name=mRNA_L-elsbetiae_contig6639.15366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig6639:5916..8298+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTCTCGGCACCTCCACCCAGTTGTTCCTCGGCACCGCCGCCACCCT
CATCGCCTCGTCTACGGCTTTCGTCGCCCCCATGACCGTGCGATCCGTGG
CACCTTCGTCGAGCCTCAAGATGCAGAGCGCTGGCTCCGCGTACGTCGAG
ACCCTGCCTGGCGCTCCCTTCTCTGACGGAAAGATGACTCTCGGCACCTC
CACCCAGTTGTTCCTCGGCACCGCCGCCACCCTCATCGCCTCGTCTACGG
CTTTCGTCGCCCCCATGACCGTGCGATCCGTGGCACCTTCGTCGAGCCTC
AAGATGCAGAGCGCTGGCTCCGCGTACGTCGAGACCCTGCCTGGCGCTCC
CTTCTCTGACGGAAAGATCTTCGACCCGCTCGGCCTGTCGGAGGGCGCGG
CTCCCGGCGACATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGACGC
GTAGCCATGCTCGCATCGCTCGGTGTTCTCGTCGCAGAGATCTTCGACCC
GCTCGGCCTGTCGGAGGGCGCGGCTCCCGGCGACATCAAGAAGTGGCGCG
AGGCCGAGATCAAGCACGGACGCGTAGCCATGCTCGCATCGCTCGGTGTT
CTCGTCGCAGAGGAGTACCACCCGTTCTTCATGGGCCCTGACTACATCGG
CCCCGCCGTGGACCACTTCCAGGAGATCTCCGCCCAGTACCCCGAGGAGT
ACCACCCGTTCTTCATGGGCCCTGACTACATCGGCCCCGCCGTGGACCAC
TTCCAGGAGATCTCCGCCCAGTACCCCGAGTTCTGGGTGTTCTCCCTCCT
GGGCATGGCCTTCATCGAGTACAACACCATCATGACCGCGTTCGAGACGC
CTAGCGCCGTGACCGGCGAGGGCGGCCTCAAGGACAGCTACAGCCCGGGA
GACCTCGGCTTCGACCCGCTCGGCCTCAAGCCCAAGACCGAGGCGGACCT
CGTGACGATGCAGACCAAGGAGCTCAACAACGGCCGCCTGGCCATGATCG
GTATCGCCGGCATGTTGGTGCAGGAGCTCATCAACCCGGCCGACATCCTC
GGCTAATTCTGGGTGTTCTCCCTCCTGGGCATGGCCTTCATCGAGTACAA
CACCATCATGACCGCGTTCGAGACGCCTAGCGCCGTGACCGGCGAGGGCG
GCCTCAAGGACAGCTACAGCCCGGGAGACCTCGGCTTCGACCCGCTCGGC
CTCAAGCCCAAGACCGAGGCGGACCTCGTGACGATGCAGACCAAGGAGCT
CAACAACGGCCGCCTGGCCATGATCGGTATCGCCGGCATGTTGGTGCAGG
AGCTCATCAACCCGGCCGACATCCTCGGCTAA
back to top