mRNA_L-elsbetiae_contig6624.15350.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6624.15350.1
Unique NamemRNA_L-elsbetiae_contig6624.15350.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6624.15350.1 vs. uniprot
Match: A0A6H5J7Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.110e-18
Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:   19 GVAMTEWARAEMLCVRPLASVVDVVPLQANEDRTAGAGXXXXXXXXXXXXXXXSTSERSGHMVAVKVSVTNLQEKRLVISRMEV 270
            GVA+TEWARAE+LCVRPLA  VDVV + A+E    G G   XXXXXXXXXX     ERSGH VAVKVS+TNLQEKRLV+SRMEV
Sbjct:  598 GVAVTEWARAEVLCVRPLAMAVDVVSVPADE----GRGSRGXXXXXXXXXXAPWACERSGHTVAVKVSLTNLQEKRLVVSRMEV 677
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BLAST of mRNA_L-elsbetiae_contig6624.15350.1 vs. uniprot
Match: D7FX28_ECTSI (Foie-gras_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX28_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.620e-16
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:   22 VAMTEWARAEMLCVRPLASVVDVVPLQANEDRTAGAGXXXXXXXXXXXXXXXSTSERSGHMVAVKVSVTNLQEKRLVISRMEV 270
            VA+TEWARAE+LCVRPLA  VDVV + A+E R +   XXXXXXXXXX        ERSGH VAVKVS+TNLQEKRLV+SRMEV
Sbjct: 1112 VAVTEWARAEVLCVRPLAMAVDVVSVPADEGRGSRGXXXXXXXXXXXAPW---ACERSGHTVAVKVSLTNLQEKRLVVSRMEV 1191
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6624.15350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7Z5_9PHAE7.110e-1871.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX28_ECTSI1.620e-1669.88Foie-gras_1 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6624contigL-elsbetiae_contig6624:4376..4998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue6.8e-13
Seed eggNOG ortholog2880.D7FX28
KEGG koko:K02575,ko:K20308
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of protein complex stability
EggNOG OGsKOG4386@1,KOG4386@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko04131
Exons2
Model size272
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6624.15350.1prot_L-elsbetiae_contig6624.15350.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6624 4376..4971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816733.8982992-CDS-L-elsbetiae_contig6624:4375..44291622816733.8982992-CDS-L-elsbetiae_contig6624:4375..4429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 4376..4429 -
1691683773.6391764-CDS-L-elsbetiae_contig6624:4375..44291691683773.6391764-CDS-L-elsbetiae_contig6624:4375..4429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 4376..4429 -
1622816733.9101317-CDS-L-elsbetiae_contig6624:4782..49711622816733.9101317-CDS-L-elsbetiae_contig6624:4782..4971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 4783..4971 -
1691683773.6535885-CDS-L-elsbetiae_contig6624:4782..49711691683773.6535885-CDS-L-elsbetiae_contig6624:4782..4971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 4783..4971 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816733.924265-UTR-L-elsbetiae_contig6624:4971..49981622816733.924265-UTR-L-elsbetiae_contig6624:4971..4998Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6624 4972..4998 -
1691683773.664468-UTR-L-elsbetiae_contig6624:4971..49981691683773.664468-UTR-L-elsbetiae_contig6624:4971..4998Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6624 4972..4998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6624.15350.1

>prot_L-elsbetiae_contig6624.15350.1 ID=prot_L-elsbetiae_contig6624.15350.1|Name=mRNA_L-elsbetiae_contig6624.15350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
MTEWARAEMLCVRPLASVVDVVPLQANEDRTAGAGGGSFAPPRRPPPPPP
STSERSGHMVAVKVSVTNLQEKRLVISRMEV
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mRNA from alignment at L-elsbetiae_contig6624:4376..4998-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6624.15350.1 ID=mRNA_L-elsbetiae_contig6624.15350.1|Name=mRNA_L-elsbetiae_contig6624.15350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=623bp|location=Sequence derived from alignment at L-elsbetiae_contig6624:4376..4998- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGAGAGGGAGGAGGGGGCGTTGCCATGACGGAGTGGGCGCGCGCGGA
GATGCTGTGCGTCCGCCCTCTGGCGTCGGTTGTCGACGTCGTGCCCCTTC
AGGCCAACGAAGACCGCACCGCCGGCGCAGGAGGCGGTTCCTTTGCGCCG
CCGCGGCGGCCGCCGCCGCCGCCGCCCTCCACGAGCGAGCGATCTGGGCA
CATGGTCGCGGTGAAGGTGAATGATCGCGAGCACTGGTGGAGATTCTGTG
TGTATGTATATATGAGGCCCACATGGCACGGGAGTACCCGGCCCGATGCA
CACCATCTCTACGGCGCAAACTACGTGGACTGTGGTGGGGTAGGCTGGGC
TCGCGGGCAGCCAGTTGAAGCTCCTCTTGCGTGCCGTACCGACATCGTCA
TTTGGCGCTCCCCGTTAACCCCCCCCCCCCCTTCTGTACCCGCCTTACAC
CTTGCCTCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CGTGGTACCTACCCCTTTTCTACCTGTTGGCCTGCCTTCCCCGTTTTCCC
GGGTTGGTCGCACACCAAGGTGTCCGTGACAAATCTACAGGAAAAGCGGC
TCGTCATCTCCCGCATGGAGGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6624:4376..4998-

>mRNA_L-elsbetiae_contig6624.15350.1 ID=mRNA_L-elsbetiae_contig6624.15350.1|Name=mRNA_L-elsbetiae_contig6624.15350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig6624:4376..4998- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGAGTGGGCGCGCGCGGAGATGCTGTGCGTCCGCCCTCTGGCGTC
GGTTGTCGACGTCGTGCCCCTTCAGGCCAACGAAGACCGCACCGCCGGCG
CAGGAGGCGGTTCCTTTGCGCCGCCGCGGCGGCCGCCGCCGCCGCCGCCC
TCCACGAGCGAGCGATCTGGGCACATGGTCGCGGTGAAGATGACGGAGTG
GGCGCGCGCGGAGATGCTGTGCGTCCGCCCTCTGGCGTCGGTTGTCGACG
TCGTGCCCCTTCAGGCCAACGAAGACCGCACCGCCGGCGCAGGAGGCGGT
TCCTTTGCGCCGCCGCGGCGGCCGCCGCCGCCGCCGCCCTCCACGAGCGA
GCGATCTGGGCACATGGTCGCGGTGAAGGTGTCCGTGACAAATCTACAGG
AAAAGCGGCTCGTCATCTCCCGCATGGAGGTCGTGTCCGTGACAAATCTA
CAGGAAAAGCGGCTCGTCATCTCCCGCATGGAGGTC
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