mRNA_L-elsbetiae_contig6617.15340.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6617.15340.1
Unique NamemRNA_L-elsbetiae_contig6617.15340.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Match: A0A6H5JK92_9PHAE (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK92_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 1.740e-95
Identity = 158/301 (52.49%), Postives = 194/301 (64.45%), Query Frame = 1 
Query:   22 ALSIYAQQMWGGIANHRDGVGYFSDPLGKASLLSYWQTLVESSSGALLLRSKRPADPAFAAVEDS-----------GDGVTVVDKGTYLGFTPPGKQQELAAAGATGRPLVGVSQRDAVVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFDLATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKWVLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILRGSRDPFTPPEELKKFAHKMPEGTETVVVEGGNHRGFAHYTRQPLDWK 891
            +LS    QMW  + + RDGVGY+SDPLGK SLLS+W+ L E + GA+ L  K P D A AA   +           GDGVTV+D G+YL F PP + Q             G      VVI PGALVPP AYAPLAR+MA+KG+PSYI+RF+F+LAT GWE   EII   A   ADG        E++G +  C    S PTKWVL GHSMG++ IE FY E+   V GVV+MG+GN+IGDA+ G+ VPAM+LRGSRDP+ P E L + AHK+P+G E VVVEGG+HRGF  Y  QPLDW+
Sbjct:   34 SLSFVPSQMWKSVGDRRDGVGYYSDPLGKPSLLSHWRGLAEFTFGAITLLPKAPTDEALAAARVTASSARGSAGWEGDGVTVMDNGSYLEFLPPPEAQACGEEDTAS----GNDHGTGVVIFPGALVPPSAYAPLARTMARKGYPSYILRFEFNLATKGWETTSEIISRSAPA-ADG--------EERGAS--CSAVVSRPTKWVLAGHSMGTVGIEMFYTEHPESVDGVVYMGSGNKIGDAMKGSEVPAMVLRGSRDPYVPAEALARSAHKLPKGAEIVVVEGGSHRGFGSYKSQPLDWQ 319
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BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Match: D7FXM1_ECTSI (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM1_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 1.000e-73
Identity = 136/265 (51.32%), Postives = 164/265 (61.89%), Query Frame = 1 
Query:   22 ALSIYAQQMWGGIANHRDGVGYFSDPLGKASLLSYWQTLVESSSGALLLRSKRPADPAFAAVEDS------------GDGVTVVDKGTYLGFTPPGKQQELAAAGATGRPLVGVSQRDAVVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFDLATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKWVLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILRGSRDPFTPPE 780
            ALS    Q+W  + + RDGVGY+SDPLGK SLLS+W+ L E + G++ L  K   D A AA   +            GDGV V+D G+YL F PP + Q    A  T     G + R  VVI PGALVPP AYAPLAR+MA+KG+PSYI+RF+F+LAT GWE   EII   A   ADG          +G    C    S PTKWVL GHSMG++ IE FY E+   V GVV+MG+GN IGDAL G+ VPAM+LRGSRDPF P E
Sbjct:   34 ALSFVPNQLWKSVGDRRDGVGYYSDPLGKPSLLSHWRGLAEFTFGSITLLPKASTDEALAAARVTASSTARGPAGWEGDGVAVMDTGSYLEFLPPPEAQACGEADTTS----GKNHRTGVVIFPGALVPPSAYAPLARTMARKGYPSYILRFEFNLATKGWEATSEIISRSAPA-ADG----------EGRGASCSAVGSRPTKWVLAGHSMGTVGIEMFYAEHPEIVDGVVYMGSGNMIGDALKGSEVPAMVLRGSRDPFVPAE 283
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BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Match: D7FW29_ECTSI (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW29_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 2.570e-62
Identity = 120/303 (39.60%), Postives = 165/303 (54.46%), Query Frame = 1 
Query:   22 ALSIYAQQMW--------GGIANHRDGVGYFSDPLGKASLLSYWQTLVESSSGALLLRSKRPADPAF-----AAVEDSGDGVTVVDKGTYLGFTPPGKQQELAAAGATGRPLVGVSQRDAVVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFDLATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKWVLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILRGSRDPFTPPEELKKFAHKMPEGTETVVVEGGNHRGFAHYTRQPLDWK 891
            AL  Y+   W          + +H  G G+F+DP GK  LL+Y + LVE +    LLRSK   D A+      A+   GDG+ V     Y+ F P    +E    G  G           V+I+PG LV P AY+ LARS+AQ+G+P++++R  F+LA YGW   G+II    T  A                         PTKWVL+GHSMG++ +E F       V+GVV+MG GN+    +    +P++++RGSRDPFTP ++++K   K P+GTET +VEGGNHRGFA Y RQPLDW+
Sbjct:   21 ALLFYSSVFWCMVPFMFGKAMIHHARGKGWFADPRGKPPLLTYGRDLVEFAMKFTLLRSKPATDLAYEATKSVAISTQGDGIMVKMTDDYMEFQP----KEGKGDGKVG-----------VIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNLAFYGWTTSGKIIKRTQTEDAP----------------------KPPTKWVLVGHSMGTLGVELFTEARPECVNGVVYMGGGNKPTGKIANLDLPSLVIRGSRDPFTPEKDMQKAVDKWPKGTETCIVEGGNHRGFASYGRQPLDWE 286
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BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Match: A0A524PGJ3_9CHLR (Alpha/beta hydrolase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524PGJ3_9CHLR)

HSP 1 Score: 85.1 bits (209), Expect = 9.210e-16
Identity = 54/185 (29.19%), Postives = 83/185 (44.86%), Query Frame = 1 
Query:  331 QRDAVVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFDLATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKWVLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILRGSRDPFTPPEELKKFAHKMPEGTETVVVEGGNHRGFAHYTRQPLD 885
            Q+  +++ PG  V P AYAP ARS+A++G+   IV    +LA +G E+ GE+I       +                            WV+ GHS+G +    F    S RV G+VF  +     D L  +R+    +  +RD  T  E+++     +P  T  + +EGGNH  F +Y  Q  D
Sbjct:   67 QKAGLILYPGGRVDPRAYAPAARSIAERGYLVVIVPMPLNLAVFGSEQAGEVIQAFPEIES----------------------------WVIGGHSLGGVMAARFASRASGRVRGLVFWASYPAASDDLRNSRLRVASIYATRDGLTSLEDIRNSTLLLPADTLWIEIEGGNHAQFGYYGSQSGD 223
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BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Match: A0A7X2IYJ0_9BACI (Alpha/beta hydrolase n=1 Tax=Metabacillus lacus TaxID=1983721 RepID=A0A7X2IYJ0_9BACI)

HSP 1 Score: 83.2 bits (204), Expect = 4.310e-15
Identity = 58/190 (30.53%), Postives = 83/190 (43.68%), Query Frame = 1 
Query:  331 QRDA---VVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFDLATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKWVLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILRGSRDPFTPPEELKKFAHKMPEGTETVVVEGGNHRGFAHYTRQPLDWK 891
            Q+DA   ++  PG LV P AYAPLA S+A KGH +YIV+    LA  G                             G+ G  L+     + + + GHS+G +    F  +N   + GV F+ +      +LV A +PA+ + GS D     E  +  A  +P      V+ GGNH  F  Y +Q  D K
Sbjct:   58 QQDALPSIIFYPGGLVKPEAYAPLALSLADKGHTTYIVKMPLHLAVLG-----------------------------GQKGKALLNQFPESTFFIGGHSLGGVMASRFAADNQNSIEGVFFLASYPDEEGSLVNANMPALSITGSMDGVLNTEAYQAAASYLPTDASYPVISGGNHSQFGSYGQQKGDLK 218
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BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Match: A0A7Y5WTH3_9BACT (Alpha/beta hydrolase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y5WTH3_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 1.030e-14
Identity = 53/181 (29.28%), Postives = 82/181 (45.30%), Query Frame = 1 
Query:  343 VVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFDLATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKWVLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILRGSRDPFTPPEELKKFAHKMPEGTETVVVEGGNHRGFAHYTRQPLD 885
            V+  PG  VPP AYAP AR++A+ G+P ++++  +  AT   ++                  AAA A  +          S P +WV+ GHS G++   A          G+  +G  +     L    +P   + G+RD   P + ++  AH +P  T  V +EGGNHR F +Y  Q  D
Sbjct:   74 VIFFPGCPVPPDAYAPFARALAEHGYPVFVMKVPYRCATLAAQQEQLF--------------AAAHAAMR----------SMPRRWVVAGHSRGAVHASALVAREPRLSAGLALIGTTHPRDVDLSSLSIPVTKIYGTRDGVAPEQRIRATAHLLPPSTRWVRIEGGNHRQFGYYRYQLWD 230
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BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Match: UPI001A96432B (alpha/beta hydrolase n=1 Tax=Telluribacter humicola TaxID=1720261 RepID=UPI001A96432B)

HSP 1 Score: 81.6 bits (200), Expect = 1.480e-14
Identity = 62/237 (26.16%), Postives = 100/237 (42.19%), Query Frame = 1 
Query:  166 LRSKRPADPAFAAVEDSGDGVTVVDKGTYLGFTPPGKQQELAAAGATGRPLVGVSQRDAVVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFDLATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKWVLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILRGSRDPFTPPEELKKFAHKMPEGTETVVVEGGNHRGFAHYTRQ 876
            L S   AD     +  S   V V +   Y+ FTP     ++                  ++  PGALV P+AYAPL R +A  G P Y+++  + LA  G+ +  EI                          G L    T  +++L GHS G+     F  EN + +  ++ +G  +     L  +++P + ++G+ D     EE+ +   K+P  T+ V++EGGNH  F  Y  Q
Sbjct:   26 LWSGMQADGVGEEILRSDAAVEVTETEDYISFTPTSTSSKV------------------LLFYPGALVDPVAYAPLCRKVAASGCPVYLIKMPWRLALNGYTKPKEI--------------------------GLLG--DTTKQYLLAGHSQGAKMAAQFVYENPSLIDKLILLGTTHPRDIDLSTSQIPILKIQGTHDGVAAVEEMNRNKSKLPSTTKYVLIEGGNHTQFGFYGYQ 216
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BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Match: UPI001EE984DD (alpha/beta hydrolase n=1 Tax=Paenibacillus piscarius TaxID=1089681 RepID=UPI001EE984DD)

HSP 1 Score: 79.0 bits (193), Expect = 1.540e-13
Identity = 68/248 (27.42%), Postives = 102/248 (41.13%), Query Frame = 1 
Query:  151 SGALLLRSKRPADP---AFAAVEDSGDGVTVVDKGTYLGFTPPGKQQELAAAGATGRPLVGVSQRDAVVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFDLATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKWVLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILRGSRDPFTPPEELKKFAHKMPEGTETVVVEGGNHRGFAHYTRQPLD 885
            +G L+ R   P  P   A  A+  +G  + V +   ++ F P       +AA  T           AV++ PGALV P AYAPLAR++AQ GHP YI R   +LA                               KG+    ++       +VL GHS+G +    F  E++ ++ GV F+ +      +L    +  + + G+ D     +   K    +P  T  V +EGGNH  F  Y  Q  D
Sbjct:   21 AGVLIWRYLTPYKPEERAETAMVSAGS-IAVEENDNWISFEP-------SAARGT-----------AVILYPGALVKPEAYAPLARAIAQAGHPFYIARMPLNLAVI-----------------------------KGDAAEEILRVHPKQSFVLGGHSLGGVMASRFAAEHAGQLEGVFFLASYPDEKGSLKDTTLSVLSVLGTEDKVVDRDSYNKGRAYIPSNTVYVSIEGGNHAQFGSYGPQKGD 220
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BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Match: UPI00198F6417 (Uncharacterized protein n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=UPI00198F6417)

HSP 1 Score: 77.8 bits (190), Expect = 4.830e-13
Identity = 58/191 (30.37%), Postives = 80/191 (41.88%), Query Frame = 1 
Query:  313 PLVGVSQRDAVVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFDLATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKWVLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILRGSRDPFTPPEELKKFAHKMPEGTETVVVEGGNHRGFAHYTRQPLD 885
            P    +   A +  PGALV P+AYAPL R+ A  G P+YI+                    L    A GGA      ++       L+A  T  +W++ GHS G++       E      G+V +G  +     L G  VP   + G+ D    P E+      +P  T  V +EGGNH  FA Y  QP D
Sbjct:   63 PAPPATNMPAFIFFPGALVDPVAYAPLLRAAAVAGFPAYIIE-------------------LPRRGAFGGADGPVPGQRLDR----LLAQMTQRRWLVAGHSRGAVVASQVAAEQRPGFAGLVLIGTSHPRDVDLSGVAVPVTKVVGTHDGLASPAEVYANRPLLPAATNWVWIEGGNHSQFASYGFQPGD 230
[Close]
BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Match: A0A3B8IGJ5_9BACT (Alpha/beta hydrolase n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3B8IGJ5_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 4.860e-13
Identity = 59/227 (25.99%), Postives = 90/227 (39.65%), Query Frame = 1 
Query:  205 VEDSGDGVTVVDKGTYLGFTPPGKQQELAAAGATGRPLVGVSQRDAVVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFDLATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKWVLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILRGSRDPFTPPEELKKFAHKMPEGTETVVVEGGNHRGFAHYTRQPLD 885
            V D+   V V     Y  F P G+  EL                  V+   G L  P AYAPL R +A+ G+  +++R D+ +  + ++++G +         D G                        K+VL GHS G+     +  EN  +V G+  +G  +    +L G  +P + L    D     +E+    H +P GT   +VEGGNH  F H  R   D
Sbjct:   37 VLDTNGEVRVEKTADYYTFAPVGEASELE-----------------VIFFQGGLTDPKAYAPLCRQLAENGYVCHLIRMDWRMPVWDYQKVGGLFD------LDSG------------------------KYVLGGHSQGAKMAAQWVYENPGQVLGLFLLGTSHPRDYSLAGQDLPTLKLYAEHDGLASVDEVLGNEHLLPLGTVLQLVEGGNHSQFGHLGRLLTD 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6617.15340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK92_9PHAE1.740e-9552.49Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
D7FXM1_ECTSI1.000e-7351.32Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
D7FW29_ECTSI2.570e-6239.60Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
A0A524PGJ3_9CHLR9.210e-1629.19Alpha/beta hydrolase n=1 Tax=Anaerolineales bacter... [more]
A0A7X2IYJ0_9BACI4.310e-1530.53Alpha/beta hydrolase n=1 Tax=Metabacillus lacus Ta... [more]
A0A7Y5WTH3_9BACT1.030e-1429.28Alpha/beta hydrolase n=1 Tax=Acidobacteria bacteri... [more]
UPI001A96432B1.480e-1426.16alpha/beta hydrolase n=1 Tax=Telluribacter humicol... [more]
UPI001EE984DD1.540e-1327.42alpha/beta hydrolase n=1 Tax=Paenibacillus piscari... [more]
UPI00198F64174.830e-1330.37Uncharacterized protein n=1 Tax=Cytophagaceae bact... [more]
A0A3B8IGJ5_9BACT4.860e-1325.99Alpha/beta hydrolase n=1 Tax=Cytophagales bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6617contigL-elsbetiae_contig6617:2033..6539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.6
Seed ortholog evalue2.5e-52
Seed eggNOG ortholog2880.D7FW29
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alpha/beta hydrolase family
EggNOG OGs2EWUG@1,2SYKF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size891
Cds size891
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6617.15340.1prot_L-elsbetiae_contig6617.15340.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6617 2033..6539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.752737-CDS-L-elsbetiae_contig6617:2032..22631622816732.752737-CDS-L-elsbetiae_contig6617:2032..2263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 2033..2263 +
1691683772.7649746-CDS-L-elsbetiae_contig6617:2032..22631691683772.7649746-CDS-L-elsbetiae_contig6617:2032..2263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 2033..2263 +
1622816732.7675009-CDS-L-elsbetiae_contig6617:4116..42271622816732.7675009-CDS-L-elsbetiae_contig6617:4116..4227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 4117..4227 +
1691683772.7779522-CDS-L-elsbetiae_contig6617:4116..42271691683772.7779522-CDS-L-elsbetiae_contig6617:4116..4227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 4117..4227 +
1622816732.778841-CDS-L-elsbetiae_contig6617:4925..50371622816732.778841-CDS-L-elsbetiae_contig6617:4925..5037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 4926..5037 +
1691683772.7897139-CDS-L-elsbetiae_contig6617:4925..50371691683772.7897139-CDS-L-elsbetiae_contig6617:4925..5037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 4926..5037 +
1622816732.789196-CDS-L-elsbetiae_contig6617:5197..53851622816732.789196-CDS-L-elsbetiae_contig6617:5197..5385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 5198..5385 +
1691683772.8020139-CDS-L-elsbetiae_contig6617:5197..53851691683772.8020139-CDS-L-elsbetiae_contig6617:5197..5385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 5198..5385 +
1622816732.8016398-CDS-L-elsbetiae_contig6617:5700..58381622816732.8016398-CDS-L-elsbetiae_contig6617:5700..5838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 5701..5838 +
1691683772.8156455-CDS-L-elsbetiae_contig6617:5700..58381691683772.8156455-CDS-L-elsbetiae_contig6617:5700..5838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 5701..5838 +
1622816732.8140478-CDS-L-elsbetiae_contig6617:6428..65391622816732.8140478-CDS-L-elsbetiae_contig6617:6428..6539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 6429..6539 +
1691683772.830218-CDS-L-elsbetiae_contig6617:6428..65391691683772.830218-CDS-L-elsbetiae_contig6617:6428..6539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6617 6429..6539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6617.15340.1

>prot_L-elsbetiae_contig6617.15340.1 ID=prot_L-elsbetiae_contig6617.15340.1|Name=mRNA_L-elsbetiae_contig6617.15340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=297bp
MYVRTYHALSIYAQQMWGGIANHRDGVGYFSDPLGKASLLSYWQTLVESS
SGALLLRSKRPADPAFAAVEDSGDGVTVVDKGTYLGFTPPGKQQELAAAG
ATGRPLVGVSQRDAVVILPGALVPPLAYAPLARSMAQKGHPSYIVRFDFD
LATYGWERIGEIIPPLATTTADGGATAAATAEQKGETGGCLVATSTPTKW
VLLGHSMGSMAIEAFYPENSARVHGVVFMGAGNRIGDALVGARVPAMILR
GSRDPFTPPEELKKFAHKMPEGTETVVVEGGNHRGFAHYTRQPLDWK
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mRNA from alignment at L-elsbetiae_contig6617:2033..6539+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6617.15340.1 ID=mRNA_L-elsbetiae_contig6617.15340.1|Name=mRNA_L-elsbetiae_contig6617.15340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4507bp|location=Sequence derived from alignment at L-elsbetiae_contig6617:2033..6539+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTACGTACATACCACGCGCTATCTATCTACGCGCAGCAAATGTG
GGGCGGTATCGCAAACCACCGCGACGGTGTCGGCTACTTCTCCGACCCTC
TCGGCAAGGCCTCGCTGCTTTCCTACTGGCAAACCCTGGTCGAGTCCTCG
TCCGGTGCGCTACTCCTCCGATCCAAGCGGCCGGCGGACCCGGCGTTCGC
GGCTGTCGAGGACTCGGGCGACGGCGTGACGGTGAGCCTGTACATATGTA
CCGTAGGTGACACAAGGTACCAACCACACCTCCTGGACCGAATGTTGGAG
CTTAGGGTTCCTCCGTAACGAAGAAGGTGCCAACACCAAACGACACATTT
TCGGACAGCCCTCGACTAGACCGTTCCGATGCCACCCCCTTCGGCACTGA
CACTCTTCTTCCTGGAAAGGAGTCGAACTTTGAGAATCTGTCCAGGGGGT
GTGGTATCTTGTGTCAACTACGGTATGCTGTTGATGGGACAACACGCTGA
TAAAGCTGAATTCCGAGCCGCACCGTCAATCGACGAGGCTGGCTGTGGGC
GTTGTTTTGCTAGGAAAAATATTTTTGGCTGGGTGTTTCATGGCAGGCCC
GTTTGTGCGCTGTGATAGGCGCGTGTATCTATCAACAACGACGTACTCGA
AACGTTTTTTTTTTTTTCATTTTTGGGTTCTCGTTTCGGGGTTTCAAACA
GCCATTGCAGATGAAGGCTTGCCACACTGGAAAACAGGCGCGCTCGCTAG
ATGGGGGTGGCGCAAGGATGTGCGTGTTATTCTCGGCTTGAGCTGCGCTG
GCCGCGCTGCGATTTATCTCATCTCTGTTGCAAAACTTTGGGCCACGAGC
ACTGCGCCGCTCACAGCTAATCGAAATGAGCATGGTTTCGGAGGCCTGGC
TAGCTCAGTAACTTCGTATGTGTGCGTCAATATCTAACTCAGAACCGATC
TTTGCCGGGTTTGGGATTCCTGGCGCACATACGATAGTGCCATTTTCTCC
TGGCGTGCACCGATATTGGAAGGTTACTTTAATGTAGAGATACACCAAAC
CAATCAATCGCCTGGTAACACACACGACCCTCAAGGCTCTGGCTGAGATG
GAGCCAGCCTACAGAGCATGGCCTTCATCGAGGGTATCAGCCAGCAAGAG
CGACTGCCACCCCCACCATACAAAAGGTTTTTTGGGCATGCAGTAGTCTA
CGCAGGGTTTTGGTCTTCAGCTACACACATGGCATGAAGCATGGAAACCG
ACCGGGAAAGGGGGGTCGGTGGTGGGGGTTAGGGGTTAGGGTCATTTGCT
ATTTGGACATGTGCAAGTTGTCTCACCGCTTGACCGGCTTTCAAAGCCCG
GTCCGATCGCTCCAGCAGCACGGCGTGTAGACGCTGCCCTCGGGAACGAC
CTTTTTCCGAAGGTGTGTATGTGTCTACATACGAAGTATGTATAGTCTAT
ATGTCAGCGTTGGCATCTGCAATTTTTTTATCGCTTTGCTGACCCTTCGG
GTCTATTTTATTTTCGTATGCCTTCTTTTTTTTAGGTATAAGTTATCCTG
TGACCACGGGAACTGACCGCATCAAGTGTTGGATTGTACGGACATAGGGA
GGTACTGGGTGGAGAGATTGGAACTTTTTTTAGTGCGAAGAAACAACAAC
AATCCTCGGGACGCCCTGTTGTGGAGTGCTCGGGTCGTGAAGCTCGGCCG
AGGGACTTCTTCTCTGTTGCGTTAATTGTAGCCTGGCCAATCCATGATAT
CTGGAAAAGGAGGCGGCGACATCTTGGCATATGTATAGATTTTCTCTTCT
CCGTGGAAGTCTCGCGAACCTTTGCTGGTCGCCGAGTGGTCGGGTCCGGT
CCGGTCCGGTGCGGCGCGGTGCGGTTTGCCTGCTTGCTCTAGACTCAGCG
TTTCGTCTTCCTTTTTTTTTAACAGGTGCGCGTTCGTTTGCCCTGCGACT
TGTCTTGTGCTTCTGTCTCCATGCGACTATTTTACGCATCGGGTACCAAT
AGGCATATAAATACGAAGTATGTATGTTCGTCGGCCGTCGGTGTGTGGGC
TGTCTAAAATTCTTCCCAAATTTGATCAATAAAGGTGGTTGACAAAGGAA
CCTACCTGGGGTTTACCCCGCCCGGGAAGCAACAGGAGCTCGCCGCTGCG
GGGGCAACAGGCCGACCGCTCGTGGGGGTGAGTCAGCGGGATGCGGTTGG
TGTCGAGTTCCCTGGCGATCTCTTTTTTCAGCGTGTACTCGAAGTACACG
GCTACCGTGTAGGCACAAGATATCACACCCCCTGGTCCGATTTCCAAAGC
TCAGTTACACCGTAATGAGTATGATATTGATACCAAACGACACGTTTTCG
GGCAGCTCTTCATGAGATCTTTCCAACACCGTCCTTTTCGGGACTGACAC
TCTTCTTGCTGTGGGGTACTTGAACTTTGACAATCGGTCCAAGGGGTGTG
TTATCTTGTGTCGTATACGGCATACGCTTGCCCGCTTGCCCGCTTGCCCG
CTTGCCCTCGTTTTCTCAAGACACCGTTCGCGGTTGTTTTCCAGAAAAAT
AAAAAGGATGAGTAAAGCTCTGCACGGCGAGTGTTGTTCCATGTTCTCGT
CAAGGACAACTTGTTGTCCTCCGCGCGGAAACAATCTCCTCCGTAGGTAG
CACCGTCCGTGCGTGCTGCCCCAGATTCCTCCCGCGTCCTTTCTTCGATC
CCCGTCTTTTCTCAAAAATCCGAGATTGTTGGCTCATATTAATCTTGTTT
TTTTGGGGGGGGTGTGCCCCAAGGATTGCGAGTCGGCTATTTTCACGTCT
AATAACCGCCGTTCCTTGTCGATATTGCTGGTATGTACATAGCCCTTAAT
GGCTTTCTTACTCTGTTTTTTTGTTTCCGCCCAACTTTCTCAGGTGGTGA
TCCTGCCGGGGGCGCTTGTGCCACCGCTCGCGTACGCGCCTCTCGCCCGC
AGCATGGCTCAAAAGGGACACCCTTCGTACATCGTCCGATTCGACTTCGA
CCTCGGTAAGCCTACTCTCAGCAAAATAATAGGTTCTAGTGCAGCAAAGA
GTCTTCTGCGCGTCTTTTCGCTTGATCGCTGGCTAGACCAGGAGATTTAT
TGCCTTGGACGGAAGCTCATGTGGCACCATCCTGTGCGGCATGCTATCGC
TTGCCACACGTGCAGCGACCTATGGGTGGGAGAGGATTGGAGAAATAATT
CCTCCGTTAGCCACCACCACGGCGGATGGTGGTGCTACCGCTGCTGCTAC
CGCGGAACAAAAGGGAGAAACTGGCGGCTGCCTTGTCGCCACCTCGACGC
CCACCAAATGGGTGCTCTTGGGCCACTCCATGGGCTCGATGGCCATCGAA
GCGGTCAGTTGTTTTGCCGTTCTCGTTTTCTCGACTTTTCCACGGCAGCG
CCTCTCCCCCGGGATGACCCCACGGGTTTTCGATAACTTTATTCTACGTA
CATACTTGTACTACGTTCCGAGAGAACACGCTAAACATGTGGTGTATTTA
CCCGTTTTTGTTGAGTACTTTCACAAGAGTTAAGGCGAGTACGGCGTGTC
AAGAGGGAGGGCTCTAAACCCAGGAGATCGTAGAAATGGCCTTTCGTTGC
ACCTGTCCATCATCGTCGTTCGCCCGCCTCTCGATCACATTTCGCTCGTG
AACGCGGTGGCGCGAAAGTTCTACCCGGAGAACTCCGCCCGCGTGCACGG
CGTGGTGTTCATGGGTGCCGGCAACAGGATTGGCGACGCATTGGTCGGCG
CGCGCGTGCCAGCTATGATCCTGCGAGGGTCTCGCGACCCGTTTACTCCA
CCAGAGGTGGGTGGGCTCGCTTCGCCAAATATTACGTCTCTGTATGGAAT
ACCGTTTGAACCCCGTATCGAGTCTTTGCTCTAGTGTGGGTTAGGTTCCA
TCTTTGATTCTTTGTTTATTTTTACAAAGGCGTTGGGTTCGCTGTTTACT
TTTTTCGATCCGCGTCAAACACCATCAGAGAGACTTTGCGGTCTTTGGAT
CCTCTTCAGAGAGGGTTCAAATGACCCCCGCCGTGAAAAAAAACGCCCAC
TTCTAGGTTCCAGCTTCTATCTTCAGGCTTCTCCTACACATGTCGTTTCT
CTCTCGTCCGTTATTTCTTTATTTCTTTATTTCTTACCTTTTCAAAGTTT
CTTGTAGAATAGGGGTGCCTGTCGTGTATGGACGAAACAACAGGGATGCT
GAGGCCGGGACAAACCGTCTTTGGAGGCGTTCCCAGAAAAACACATTCTA
TGATATAATAGGATTCGTATCGTCAAAGTCGTCAAAGTCGACCCCCGCCC
GCTCCACCGTTTCGCCGTCCGGTTTTACTCCATTCCGCGCATCGACACAC
GAACATCGTCCAACTGAATGTTCGTTGATAAATATTGCGACAATAGGAAT
TGAAGAAGTTTGCGCACAAGATGCCTGAGGGCACGGAGACTGTGGTGGTC
GAAGGCGGGAACCACCGAGGCTTCGCGCACTACACCCGGCAGCCCCTTGA
TTGGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6617:2033..6539+

>mRNA_L-elsbetiae_contig6617.15340.1 ID=mRNA_L-elsbetiae_contig6617.15340.1|Name=mRNA_L-elsbetiae_contig6617.15340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1782bp|location=Sequence derived from alignment at L-elsbetiae_contig6617:2033..6539+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTACGTACATACCACGCGCTATCTATCTACGCGCAGCAAATGTG
GGGCGGTATCGCAAACCACCGCGACGGTGTCGGCTACTTCTCCGACCCTC
TCGGCAAGGCCTCGCTGCTTTCCTACTGGCAAACCCTGGTCGAGTCCTCG
TCCGGTGCGCTACTCCTCCGATCCAAGCGGCCGGCGGACCCGGCGTTCGC
GGCTGTCGAGGACTCGGGCGACGGCGTGACGATGTATGTACGTACATACC
ACGCGCTATCTATCTACGCGCAGCAAATGTGGGGCGGTATCGCAAACCAC
CGCGACGGTGTCGGCTACTTCTCCGACCCTCTCGGCAAGGCCTCGCTGCT
TTCCTACTGGCAAACCCTGGTCGAGTCCTCGTCCGGTGCGCTACTCCTCC
GATCCAAGCGGCCGGCGGACCCGGCGTTCGCGGCTGTCGAGGACTCGGGC
GACGGCGTGACGGTGGTTGACAAAGGAACCTACCTGGGGTTTACCCCGCC
CGGGAAGCAACAGGAGCTCGCCGCTGCGGGGGCAACAGGCCGACCGCTCG
TGGGGGTGAGTCAGCGGGATGCGGTGGTTGACAAAGGAACCTACCTGGGG
TTTACCCCGCCCGGGAAGCAACAGGAGCTCGCCGCTGCGGGGGCAACAGG
CCGACCGCTCGTGGGGGTGAGTCAGCGGGATGCGGTGGTGATCCTGCCGG
GGGCGCTTGTGCCACCGCTCGCGTACGCGCCTCTCGCCCGCAGCATGGCT
CAAAAGGGACACCCTTCGTACATCGTCCGATTCGACTTCGACCTCGGTGG
TGATCCTGCCGGGGGCGCTTGTGCCACCGCTCGCGTACGCGCCTCTCGCC
CGCAGCATGGCTCAAAAGGGACACCCTTCGTACATCGTCCGATTCGACTT
CGACCTCGCGACCTATGGGTGGGAGAGGATTGGAGAAATAATTCCTCCGT
TAGCCACCACCACGGCGGATGGTGGTGCTACCGCTGCTGCTACCGCGGAA
CAAAAGGGAGAAACTGGCGGCTGCCTTGTCGCCACCTCGACGCCCACCAA
ATGGGTGCTCTTGGGCCACTCCATGGGCTCGATGGCCATCGAAGCGCGAC
CTATGGGTGGGAGAGGATTGGAGAAATAATTCCTCCGTTAGCCACCACCA
CGGCGGATGGTGGTGCTACCGCTGCTGCTACCGCGGAACAAAAGGGAGAA
ACTGGCGGCTGCCTTGTCGCCACCTCGACGCCCACCAAATGGGTGCTCTT
GGGCCACTCCATGGGCTCGATGGCCATCGAAGCGTTCTACCCGGAGAACT
CCGCCCGCGTGCACGGCGTGGTGTTCATGGGTGCCGGCAACAGGATTGGC
GACGCATTGGTCGGCGCGCGCGTGCCAGCTATGATCCTGCGAGGGTCTCG
CGACCCGTTTACTCCACCAGAGTTCTACCCGGAGAACTCCGCCCGCGTGC
ACGGCGTGGTGTTCATGGGTGCCGGCAACAGGATTGGCGACGCATTGGTC
GGCGCGCGCGTGCCAGCTATGATCCTGCGAGGGTCTCGCGACCCGTTTAC
TCCACCAGAGGAATTGAAGAAGTTTGCGCACAAGATGCCTGAGGGCACGG
AGACTGTGGTGGTCGAAGGCGGGAACCACCGAGGCTTCGCGCACTACACC
CGGCAGCCCCTTGATTGGAAGGAATTGAAGAAGTTTGCGCACAAGATGCC
TGAGGGCACGGAGACTGTGGTGGTCGAAGGCGGGAACCACCGAGGCTTCG
CGCACTACACCCGGCAGCCCCTTGATTGGAAG
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