mRNA_L-elsbetiae_contig6614.15337.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6614.15337.1
Unique NamemRNA_L-elsbetiae_contig6614.15337.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Match: A0A6H5KJ60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ60_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.870e-21
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QDEIFDMVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESLAT 153
            +DEIFDMVKPADPTFITL DLL SG G TVV+MLVD NGFWTYDNRESLAT
Sbjct:  681 KDEIFDMVKPADPTFITLADLLASGAGHTVVTMLVDTNGFWTYDNRESLAT 731
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BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Match: D7FPD4_ECTSI (Protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD4_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 7.220e-21
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QDEIFDMVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESLAT 153
            +DEIFDMVKPADPTFITL DLL SG G TVVSMLVD NGFW YDNRESLAT
Sbjct:  695 KDEIFDMVKPADPTFITLADLLASGAGHTVVSMLVDTNGFWAYDNRESLAT 745
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BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Match: A0A2L2YPI1_PARTP (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YPI1_PARTP)

HSP 1 Score: 79.3 bits (194), Expect = 1.420e-17
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QDEIFDMVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESL 147
            +DEIFDM+KPADP  +TL DL+LSG G TVVS+L+D+NGFWTY+NRE L
Sbjct:   85 KDEIFDMIKPADPLKVTLQDLILSGQGDTVVSILIDLNGFWTYENREVL 133
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BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Match: A0A1B6EJK3_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EJK3_9HEMI)

HSP 1 Score: 77.4 bits (189), Expect = 4.460e-17
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QDEIFDMVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESL 147
            +DE+FDM+KP DPT ITL DLL SG G T+VS+L+D+NGFWTY+NRE++
Sbjct:   60 KDEMFDMIKPVDPTKITLQDLLNSGQGETLVSILIDLNGFWTYENREAM 108
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BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Match: A0A1B6HTW8_9HEMI (Uncharacterized protein n=3 Tax=Homalodisca TaxID=139475 RepID=A0A1B6HTW8_9HEMI)

HSP 1 Score: 77.4 bits (189), Expect = 5.330e-17
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QDEIFDMVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESL 147
            +DE+FDM+KP DPT ITL DLL SG G T+VS+L+D+NGFWTY+NRE++
Sbjct:   67 KDEMFDMIKPVDPTKITLQDLLNSGQGETLVSILIDLNGFWTYENREAM 115
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BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Match: A0A7R9E5C7_9NEOP (Hypothetical protein n=1 Tax=Timema monikensis TaxID=170555 RepID=A0A7R9E5C7_9NEOP)

HSP 1 Score: 75.5 bits (184), Expect = 2.140e-16
Identity = 32/50 (64.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 QDEIFDMVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESLA 150
            +DE+FDMVKPA+P +ITL DL+  G G TVV++L+D+NGFWTY+NRE++A
Sbjct:   52 KDEVFDMVKPANPAWITLQDLVNCGQGDTVVTILIDLNGFWTYENREAMA 101
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BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Match: A0A1B6LAF6_9HEMI (Uncharacterized protein n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6LAF6_9HEMI)

HSP 1 Score: 80.1 bits (196), Expect = 2.640e-16
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 QDEIFDMVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESLA 150
            +DE+FDM+KP DPT ITL DLL+SG G T+VS+L+D NGFWTY+NRE++A
Sbjct:  387 KDEMFDMIKPVDPTRITLQDLLISGQGETLVSILIDFNGFWTYENREAMA 436
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BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Match: UPI00077FDEAE (serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FDEAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.920e-16
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QDEIFDMVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESL 147
            +DEIFDM+KPADP  +TL DL+LSG G TVVS+L+D+NGFWTY+NRE L
Sbjct:  383 KDEIFDMIKPADPLKVTLQDLILSGQGDTVVSILIDLNGFWTYENREVL 431
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BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Match: A0A8J1XXM3_OWEFU (Ofus.G092195 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XXM3_OWEFU)

HSP 1 Score: 79.3 bits (194), Expect = 4.980e-16
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QDEIFDMVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESL 147
            +DEIFDMVKPADP  ITL DL++SG G TVVS+L+D+NGFWTY+NRE L
Sbjct:  388 KDEIFDMVKPADPLKITLQDLIISGQGDTVVSILIDLNGFWTYENREVL 436
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BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Match: A0A087UM80_STEMI (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087UM80_STEMI)

HSP 1 Score: 75.1 bits (183), Expect = 8.760e-16
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 QDEIFDMVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESL 147
            +DEIFDM+ PADP  +TL DL+L G G T+VS+L+D+NGFWTY+NRE L
Sbjct:  100 KDEIFDMINPADPLKVTLQDLILCGQGDTIVSILIDLNGFWTYENREVL 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6614.15337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ60_9PHAE3.870e-2186.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPD4_ECTSI7.220e-2186.27Protein phosphatase 2A regulatory subunit n=1 Tax=... [more]
A0A2L2YPI1_PARTP1.420e-1771.43Serine/threonine-protein phosphatase 2A regulatory... [more]
A0A1B6EJK3_9HEMI4.460e-1767.35Uncharacterized protein (Fragment) n=1 Tax=Cuerna ... [more]
A0A1B6HTW8_9HEMI5.330e-1767.35Uncharacterized protein n=3 Tax=Homalodisca TaxID=... [more]
A0A7R9E5C7_9NEOP2.140e-1664.00Hypothetical protein n=1 Tax=Timema monikensis Tax... [more]
A0A1B6LAF6_9HEMI2.640e-1668.00Uncharacterized protein n=1 Tax=Graphocephala atro... [more]
UPI00077FDEAE4.920e-1671.43serine/threonine-protein phosphatase 2A regulatory... [more]
A0A8J1XXM3_OWEFU4.980e-1673.47Ofus.G092195 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A087UM80_STEMI8.760e-1665.31Serine/threonine-protein phosphatase 2A regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6614contigL-elsbetiae_contig6614:96..251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue3.5e-14
Seed eggNOG ortholog2880.D7FPD4
Preferred namePPP2R3C
KEGG koko:K11583
KEGG Pathwayko03015,ko04071,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04151,map04152,map04261,map04728,map05165
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0000913,GO:0001776,GO:0001782,GO:0001932,GO:0001934,GO:0002260,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002759,GO:0002831,GO:0002920,GO:0003254,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0008104,GO:0008150,GO:0009524,GO:0009653,GO:0009790,GO:0009792,GO:0009826,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0012505,GO:0015630,GO:0016043,GO:0016049,GO:0019220,GO:0019222,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022607,GO:0030865,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032101,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032506,GO:0032989,GO:0033036,GO:0033365,GO:0033674,GO:0034613,GO:0040007,GO:0042325,GO:0042327,GO:0042391,GO:0042592,GO:0043029,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043549,GO:0043900,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045577,GO:0045579,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045859,GO:0045860,GO:0045937,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048536,GO:0048583,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050776,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0051094,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051249,GO:0051251,GO:0051301,GO:0051338,GO:0051347,GO:0051641,GO:0051721,GO:0051881,GO:0051900,GO:0060255,GO:0060560,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0140014,GO:1902105,GO:1902107,GO:1902410,GO:1902850,GO:1903047,GO:1903706,GO:1903708,GO:2000026
EggNOG free text desc.positive regulation of B cell differentiation
EggNOG OGsKOG2562@1,KOG2562@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Exons1
Model size156
Cds size138
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.4367561-UTR-L-elsbetiae_contig6614:95..1131622816732.4367561-UTR-L-elsbetiae_contig6614:95..113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6614 96..113 +
1691683772.5496037-UTR-L-elsbetiae_contig6614:95..1131691683772.5496037-UTR-L-elsbetiae_contig6614:95..113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6614 96..113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.4493763-CDS-L-elsbetiae_contig6614:113..2511622816732.4493763-CDS-L-elsbetiae_contig6614:113..251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6614 114..251 +
1691683772.5687087-CDS-L-elsbetiae_contig6614:113..2511691683772.5687087-CDS-L-elsbetiae_contig6614:113..251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6614 114..251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6614.15337.1prot_L-elsbetiae_contig6614.15337.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6614 114..251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6614.15337.1

>prot_L-elsbetiae_contig6614.15337.1 ID=prot_L-elsbetiae_contig6614.15337.1|Name=mRNA_L-elsbetiae_contig6614.15337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=46bp
MVKPADPTFITLTDLLLSGTGRTVVSMLVDVNGFWTYDNRESLAT*
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mRNA from alignment at L-elsbetiae_contig6614:96..251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6614.15337.1 ID=mRNA_L-elsbetiae_contig6614.15337.1|Name=mRNA_L-elsbetiae_contig6614.15337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig6614:96..251+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGACGAGATCTTCGACATGGTGAAGCCTGCGGATCCCACCTTTATTAC
CCTCACCGACCTGCTGCTGAGCGGCACCGGCCGCACGGTGGTGAGCATGC
TCGTGGACGTGAACGGCTTCTGGACGTACGACAACCGCGAGAGTCTCGCC
ACATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6614:96..251+

>mRNA_L-elsbetiae_contig6614.15337.1 ID=mRNA_L-elsbetiae_contig6614.15337.1|Name=mRNA_L-elsbetiae_contig6614.15337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig6614:96..251+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAAGCCTGCGGATCCCACCTTTATTACCCTCACCGACCTGCTGCT
GAGCGGCACCGGCCGCACGGTGGTGAGCATGCTCGTGGACGTGAACGGCT
TCTGGACGTACGACAACCGCGAGAGTCTCGCCACATGAATGGTGAAGCCT
GCGGATCCCACCTTTATTACCCTCACCGACCTGCTGCTGAGCGGCACCGG
CCGCACGGTGGTGAGCATGCTCGTGGACGTGAACGGCTTCTGGACGTACG
ACAACCGCGAGAGTCTCGCCACATGA
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