mRNA_L-elsbetiae_contig6605.15327.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6605.15327.1
Unique NamemRNA_L-elsbetiae_contig6605.15327.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 1.240e-91
Identity = 281/513 (54.78%), Postives = 336/513 (65.50%), Query Frame = 1
Query:  202 EDRTRLDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDMDLFTRLMDAGADGSAGWRGCDGQTLLGAACGAPHKSEEMVLALLQAGSKNDVNVTFGAKQESALHVAAHSGEEKVANTLMLAGANPNALNVYTQSXXXXXXXXXXXXXXXXXXXXXXXXSTKVARSGGTXXXXXXXXXXXXXXXXXXXXXXDPDSLNIYGAXXXXXXXXXXXXXXXXXXXXXGASLHIRETIYPGY--SALDIAARRGHADVVRVLLAHGCS-VSLSDAYGCTALHYAAYSGNILVSDNSGVVRMLLEAGAD-----TDGGLETPLQIETR--MGPRSTMCALLEGGANVNACSSDDGHTPLHEACHESNVGAVELLLRWGADEKLLDTAGSTVYDVLGAWEEEGVEGDSDYNEERKANDQRIRHMLERAPADRSWRRRRWLVLARSCPAKVHLTFEGDSGG------GGSGSGNCVDARGGGK--KRTGDQTRNGLEHLVSSVVGLYADEVFRLVVGFL 1686
            EDR+RL GFE+EIF+L+R  AT +QW+EWLRAPLEHA A+G++DLFTRLMDAGA+  AGWRGC G+TLLGAA  A  +SE+M+  LL AG+ +DVNV FG + ESALHVAA  G +     LM+AGA+PN  +   +S XXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXX A+  +R     G   S L+IAA RGHADV++ LL    S V  ++  G  ALHY A S +  V D    VR+LL AGAD     T+    TPL +     M    T+CALLEGGAN+NA ++ D  TPLH AC       VELLLRWGADEKL +  G T  DV+G  E+  ++     +EER+A++QRI  ML RAPADRSWRRR WLVL+RSCP +VH+     S        G S     V  +G  +  + T DQ    L  LV  +VGL A+ +FRLVVGFL
Sbjct:    9 EDRSRLVGFEIEIFKLLRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANTEAGWRGCHGRTLLGAA--ALGRSEKMIRTLLTAGATDDVNVLFGGESESALHVAAARGADDTCRALMIAGADPNVRDRVGRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANCGLRSMCTNGSRCSPLEIAAGRGHADVLKALLDKRSSEVDTANDLGWAALHYVA-SFDETVRDKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDD-TPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLD-----DEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511          
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 1.100e-86
Identity = 281/525 (53.52%), Postives = 335/525 (63.81%), Query Frame = 1
Query:  172 LSTMSAPPRREDRTRLDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDMDLFTRLMDAGADGSAGWRGCDGQTLLGAACGAPHKSEEMVLALLQAGSKNDVNVTFGAKQESALHVAAHSGEEKVANTLMLAGANPNALNVYTQSXXXXXXXXXXXXXXXXXXXXXXXXSTKVARSGGTXXXXXXXXXXXXXXXXXXXXXXDPDSLNIYGAXXXXXXXXXXXXXXXXXXXXXGASLHIRETIYPGYSALDIAARRGHADVVRVLLAHGCS-VSLSDAYGCTALHYAAYSGNILVSDNSGVVRMLLEAGAD-----TDGGLE-TPLQIET--RMGPRSTMCALLEGGANVNACSSDDGHTPLHEACHESNVGAVELLLRWGADEKLLDTAGSTVYDVLGAWEEEGVEGDSDYNEERKANDQRIRHMLERAPADRSWRRRRWLVLARSCPAKVHLTFEGDSGG--GGSGSGNCVDAR---------GGGKKRTGDQTRNGLEHLVSSVVGLYADEVFRLVVGFL 1686
            +++ +A  + +DRTR+DGFE+EIF+LV+  ATSKQW+EWLRAPLEHA A G++ LFTRLMDAGA   AGWRGCDG+TLLGAA  A  K+++++ ALL AG+K+DVNV FGAK+ESALH+AA  G E+ +  LM+AGANPN        XXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXX                           +V+  L    S V+ +D YG TALH+AA    +   D    VR+LL AGAD     TD  L   PL I    R+    T+ ALLEGGA+VN    +D  TPLHEAC  S+V AVELLLRWGADEKL D    T  D++G   + G    SD+ +  +A+ QRI  ML RAPADRSWRRR WLVL+RSCP +V +  E  SG   G S S N    +         GGG++ T DQ    L  LV+ +VGL AD +FRLVVGFL
Sbjct:    1 MASAAASQQSQDRTRVDGFEVEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAA--ACSKNKKILRALLTAGAKSDVNVLFGAKRESALHLAAARGAEEASKALMIAGANPNLRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIVKAFLDTDTSLVNATDHYGYTALHHAALI-EVHGRDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIED-RTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDVG----SDHGD-IEADGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSSSSSNGNSTKLARFSGEDSGGGERETEDQMMVDLRGLVTRLVGLEADGLFRLVVGFL 513          
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 2.280e-78
Identity = 211/518 (40.73%), Postives = 268/518 (51.74%), Query Frame = 1
Query:  202 EDRTRLDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDMDLFTRLMDAGADGSAGWRGCDGQTLLGAACGAPHKSEEMVLALLQAGSKNDVNVTFGAKQESALHVAAHSGEEKVANTLMLAGANPNALNVYTQSXXXXXXXXXXXXXXXXXXXXXXXXSTKVARSGGTXXXXXXXXXXXXXXXXXXXXXXDPDSLNIYGAXXXXXXXXXXXXXXXXXXXXXGASLHIRETIYPGYSALDIAARRGHADVVRVLLAHGCS-VSLSDAYGCTALHYAAYSGNILVSDNSGVVRMLLEAGADTDG-GLETP------LQIETRMGPRSTMCALLEGGANVNACSSDDGHTPLHEACHESNVGAVELLLRWGADEKLLDTAGSTVYDVLGAWEEEGVEGDSDYNEERKANDQRIRHMLERAPADRSWRRRRWLVLARSCPAKVHLT---------------FEGDSGGGGSGSGNCVDARGGGKKRTGDQTRNGLEHLVSSVVGLYADEVFRLVVGFL 1686
            EDR+RLDGFE+EIF+LV+  ATS+QW+EWLRAP EHA A+G++D FTRLMDAGA+  AGWRGC+G+TLLGAA  A  +SE+MV   L AG+ +DVNV FG ++E+                LM+ GA+PN  +   +S                          K A     XXXXXXXXX               +++    A                     GA+  +R       S L+IAA RG ADVV+ LL      V  +D  G  ALHYAA S +  V DN   VR+LL AGAD    G + P      L +  R+    T+ ALLEGGAN+NA    D  TPLH AC  S+   VELLLRWGAD+KL    G T   V+ A +++ ++     +EE +A++QRIR ML R PA RSWRRR WLVL+RSCP +V +                  G+S      SG          + T D     L  LV  ++ L AD VFRLVVGFL
Sbjct:    9 EDRSRLDGFEIEIFKLVQRGATSEQWKEWLRAPREHAAAEGNLDFFTRLMDAGANAGAGWRGCNGRTLLGAA--AFGRSEKMVRTTLTAGATDDVNVLFGGEREA----------------LMIDGADPNVRDRRKRSPLHLAAVAGHHRVVGMLLLNRACVHAKTASQXXXXXXXXXXXXALCISELLLGANSHLEAVQELLAA--------------------GANYSLRTN--GSRSPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAA-SIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNRRIASDGTIRALLEGGANINARIGGD-QTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLD-----DEELEADNQRIRRMLARDPAARSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXNGNSAKVAKVSGESSSRD---DEETADDMMVDLRDLVGRLIALEADGVFRLVVGFL 476          
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 3.170e-73
Identity = 259/516 (50.19%), Postives = 314/516 (60.85%), Query Frame = 1
Query:  196 RRED-RTRLDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDMDLFTRLMDAGA-DGSAGWRGCDGQTLLGAACGAPHKSEEMVLALLQAGSKNDVNVTFGAKQESALHVAAHSGEEKVANTLMLAGANPNALNVYTQSXXXXXXXXXXXXXXXXXXXXXXXXSTKVARSGGTXXXXXXXXXXXXXXXXXXXXXXDPDSLNIYGAXXXXXXXXXXXXXXXXXXXXXGASLHIRETIYPGYSALDIAARRGHADVVRVLLAHGCSVSLSDAYGCTALHYAAYSGNILVSDNSGVVRMLLEAGA--DTDGGLE----TPLQ--IETRMGPRSTMCALLEGGANVNACSSDDGHTPLHEACHESNVGAVELLLRWGADEKLLDTAGSTVYDVLGAWEEEGVEGDSDYNEERKANDQRIRHMLERAPADRSWRRRRWLVLARSCPAKVHLTFEGDSGGGGSGSGNCVDAR---------GGGKKRTGDQTRNGLEHLVSSVVGLYADEVFRLVVGFL 1686
            +RED R+RLDGFE+EIF+LV+E  TS+QW++WL+ PLEHA A+G++DLFTRLMDAG   G  GWRGC+G+TLLGAA  A  KS+++V ALL+AG+ +DVNV FG + +SALHVAA  G E+ +  LM+AGA+PN   ++     XXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXX                                      V   D  G TA+H A      L  DN  VVR+LLEAG   + + G +    TPL   +E R+    T  ALLEGGAN NA     G TPLH AC  SNV AVELLLRWGADE   +  G    DV+G ++   V      +E+ KA+ +RIR ML RAPADRSWRRR WLVL+RSCP +V +  +G        + N   A+         GG ++   +Q       LV S++GL AD +FRLVVGFL
Sbjct:    7 KREDGRSRLDGFEIEIFKLVQEEVTSEQWKQWLQVPLEHAAARGNLDLFTRLMDAGGFGGERGWRGCNGRTLLGAA--AWGKSDKVVRALLEAGAGDDVNVLFGPEGKSALHVAAARGAEEASKALMVAGADPN---LFDCKGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDTGDDQGYTAIHCAVNRHGPL--DNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSG-TPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVN-----DEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQIANKGSRV-----NRNSCPAKVARVSGEDLGGDEEEAENQMTVDWGGLVGSLLGLEADGLFRLVVGFL 504          
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 3.810e-62
Identity = 210/529 (39.70%), Postives = 267/529 (50.47%), Query Frame = 1
Query:  196 RREDRTRLDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDMDLFTRLMDAGADGSAGWRGCDGQTLLGAACGAPHKSEEMVLALLQAGSKNDVNVTFGAKQESALHVAA-------------------HSGEEKVANTLMLAGANPNALNVYTQSXXXXXXXXXXXXXXXXXXXXXXXXSTKVARSGGTXXXXXXXXXXXXXXXXXXXXXXDPDSLNIYGAXXXXXXXXXXXXXXXXXXXXXGASLHIRETIYPGYSALDIAARRGHADVVRVLLAHGCSVSLSDAYGCTALHYAAYSGNILVSDNSG-VVRMLLEAGADTDGG------LETPLQ--IETRMGPRSTMCALLEGGANVNACSSDDGHTPLHEACHESNVGAVELLLRWGADEKLLDTAGSTVYDVLGAWEEEGVEGDSDYNEERKANDQRIRHMLERAPADRSWRRRRWLVLARSCPAKVHLTFEGDSGGGGSGSGNCVDARGGGKKRTGDQTRNGL----EHLVSSVVGLYADEVFRLVVGFL 1686
            +REDR+ LDGFE+EI  LVRE ATS+QWR+WLR PLEHA AKG++DLFTRLMDAG+ G  GWRGC+G+TLLGA   A  +SE+MV ALL+AG   D NV F A+ +SALHVAA                     G ++V + L+L GA+ +A   Y+     XXXXXXXXXXXXXXXXX     T VA    T                       PD+                                       G+S+L  A   GHA +V+  L  G  V  +D    T LH AA        D  G VV +LLEAGAD +        L TPL   ++ R+    T+ A           S +D  TPLH AC  SN   V+LLL WGAD    +  G    DV+ A +E+G++     +E  +A+ + +R ML RAPAD+SWRR  WLVL+RS P +V +   G SG   S S       G    R  D+  N +      L+  +VGL AD +FRL+VGFL
Sbjct:    7 KREDRSHLDGFEVEIVELVREGATSEQWRQWLRIPLEHAAAKGNLDLFTRLMDAGSSGEPGWRGCNGRTLLGAT--AYGESEKMVRALLEAGVTYDRNVRFSAEGKSALHVAAARDPNLPACKGYHALHVAAERGHDRVISLLLLKGAHVDA-KTYSGDAPLXXXXXXXXXXXXXXXXXLGGAHTDVAERHPTNSSGRWKCFWLPVPTGGR-----PDN--------------------------------------GGWSSLPNAVCCGHATIVKAFLETGIDVDTTDDQAYTVLHRAA--------DMDGCVVHVLLEAGADVNAKTDQNSFLYTPLHLAVDRRVSSIRTIRAXXXXXXXXXXXS-EDNDTPLHVACTYSNAAVVKLLLCWGADGTCSNGNGHVPADVIRAHDEDGLD-----DEHIEADHKHVRRMLARAPADKSWRRHGWLVLSRSGPTRVQIGNRGGSGSSNSCSTKLARVSGKDSSRD-DELENQMMVDWRVLLDRLVGLEADGLFRLMVGFL 474          
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 5.280e-61
Identity = 202/516 (39.15%), Postives = 253/516 (49.03%), Query Frame = 1
Query:  217 LDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDMDLFTRLMDAGADGSAGWRGCDGQTLLGAACGAPHKSEEMVLALL-QAGSKNDVNVTFGAKQESALHVAAHSGEEKVANTLMLAGANPNALNVYTQSXXXXXXXXXXXXXXXXXXXXXXXXSTKVARSGGTXXXXXXXXXXXXXXXXXXXXXXDPDSLNIYGAXXXXXXXXXXXXXXXXXXXXXGASLHIRETIYPGYSALDIAARRGHADVVRVLLAHGCSV---------SLSDAYGCTALHYAAYSGNILVSDNSGVVRMLLEAGADTDGGLE---TPLQ--IETRMGPRSTMCALLEGGANVNACSSDDGHTPLHEACHESNVGAVELLLRWGADEKLLDTAGSTVYDVLGAWEEE--GVEGDSDYNEER-KANDQRIRHMLERAPADRSWRRRRWLVLARSCPAKVHLTFEGDSGGGGSG-----------SGNCVDARGGGKKRTGDQTRNGLEHLVSSVVGLYADEVFRLVV 1677
            LDG E+EIF+LVRE+ATS QWREWLRAPLEHA A+G++DLFTRLMDAGADGSAGWRGC G+TLLGAA  A  K+EE+V  LL + G+  DVNV FG + ESALHVAA   ++ ++  L++AGA+PN L+   +S                        + K       XXXXXXXXXXXX              L +YGA          XXXXXXXXXXX                                                + +D    TALH AA     L+                     E   TPL   + +R+    T           NA  +++  TPLH AC++SN  AV+LLLRWGAD+ ++D  G T  D +G W+ E    E D   ++++ KA+ QR R +L  AP DR WRRR WLVL RS P KV +  +  S   G             SG C D         GD+ R  L  LV  +VGL AD VFR+VV
Sbjct:   65 LDGLEVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAA--AYGKNEEIVERLLAEDGATEDVNVCFGDRLESALHVAAGRDDQHLSRVLLIAGADPNLLDDVGRSPLHVAAEKGHHRVLGFLLRKGRADANKTTXXXXXXXXXXXXXXXXXTSCV--------SKLLLYGADTDCGDRFENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWNDEDWATALHCAAQGSRPLLEXXXXXXXXXXXXXXXXXXXXECVWTPLHRGVYSRLSSLDTXXXXXXXXXXXNA-QAENTWTPLHYACYKSNAAAVDLLLRWGADDTIVDGEGETAADEVGTWDPEVHSNEDDGSIDDDKLKADGQRTRLILACAPVDRLWRRRGWLVLCRSYPTKVQILKDSSSSSSGCSTAKAARVSEEDSGECGD-------EDGDEARIELGRLVGHIVGLQADVVFRMVV 562          
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Match: D7FZ92_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 2.770e-52
Identity = 183/413 (44.31%), Postives = 218/413 (52.78%), Query Frame = 1
Query:  181 MSAPPRREDRTRLDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDMDLFTRLMDAGADGSAGWRGCDGQ--TLLGAA-CGAPHKSEEMVLALLQAGSKNDVNVTFGAKQESALHVAAHSGEEKVANTLMLAGANPNALNVYTQSXXXXXXXXXXXXXXXXXXXXXXXXSTKVARSG-GTXXXXXXXXXXXXXXXXXXXXXXDPDSLNIYGAXXXXXXXXXXXXXXXXXXXXXGASLHIRETIYPGYSALDIAARRGHADVVRVLLAHGC-SVSLSDAYGCTALHYAAYSGNILVSDNSGVVRMLLEAGAD----TDG----GLETPLQIETRMGPRSTMCALLEGGANVNACSSDD--GHTPLHEACHESNVGAVELLLRWGADEKLLDTAGSTVYDVLGAWEEEGVEG 1374
            MSA  R EDR+R+DGFE+EIF+LV+E ATSKQW++WLR PLEHA AKG++DLFTRL+DAGA G  GW+G   +  TLLGAA CG  +KS+ MV ALL+AG    VN +FGA +ESALHV    G E  +  LM+AGA+PN  NV   S                        S         TXXXXXXXXXXX           D D  +  G   XXXXXXXXXXXXXXXXXXX                      RG+A +++  L      V  +D  G TALHYAAY     V DN   VR LLEAGAD    TD      + TPL +       +++C +                  TPLH AC   NV  VELLLRWGADE L +    T  D +G W +E   G
Sbjct:    1 MSASEREEDRSRVDGFEIEIFKLVKEEATSKQWKQWLRTPLEHAAAKGNLDLFTRLIDAGAGGEPGWQGWGHRERTLLGAAACG--NKSDVMVQALLEAGETEFVNTSFGATRESALHVTVARGAEDASKALMMAGADPNLGNVDGDSPLHLAAEAGHHRVIGILLLRKEAQSADPMNLFLETXXXXXXXXXXXLCISELLMGGADKDVTD--GKGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGNAAMLKAFLDKDSREVDATDGRGWTALHYAAYVDRS-VHDNGDAVRALLEAGADVNVKTDAHASDDIFTPLHVAVNR-RMASICMIXXXXXXXXXXXXXXXCNQTPLHVACMWGNVSGVELLLRWGADEMLKNHRADTPADEIGVWGDEDRHG 407          
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 9.110e-52
Identity = 177/553 (32.01%), Postives = 248/553 (44.85%), Query Frame = 1
Query:  208 RTRLDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDMDLFTRLMDAGADGSAGWRGCDGQTLLGAACGAPHKSEEMVLALLQAGSKNDVNVTFGAKQESALHVAAHSGEEKVANTLMLAGANPNALNVYTQSXXXXXXXXXXXXXXXXXXXXXXXXSTKVARSGGTXXXXXXXXXXXXXXXXXXXXXX-DPDSLNIYGAXXXXXXXXXXXXXXXXXXXXXGASLHIRET--IYPGYSALDIAARRGHADVVRVLLAHGCSVSLSDAYGCTALHYAAYSGNILVSDNSGVVRMLLEAGADTDGGL------ETPLQIETRMGPRSTMCALLEGGANVNACSSDDGHTPLHEACHESNVGA---VELLLRWGADEKLLDTAGSTVYDVLGAWEEEG--------------VEGDSDYNEERKANDQRIRHMLERAPADRSWRRRRWLVLARS-------CPAKV----------------HLTFEGDS--------GGGGSGSGNCVDARGGGKKRTGDQTRN---GLEHLVSSVVGLYADEVFRLVVGFL 1686
            R  L+G ELEIF+L+   AT +QW EWLRAPLEHA A+G++ L  RL++AGA+G AGWRGC G+T+L AA  A   + ++V  LL +G  +DVNV   + + SALHVA+  G E  A  L++AGA+ N ++                                   SG T                       D D+L+  G                      GA +++R     + G +A+D+A  +GH  V+  ++ +G +V  +D YG TALH+A           +  V +LL+AGAD +          TPL +         + ALL+ G NVN  +   G + LH  C   + G    V+LLLRWGA E  ++  G T  D+L     E               V G +  ++      QR R +L RAPADR+WRRR WLV+ R+        P+                  H   +GD+        G  G GSG     RG    R G  TR    G   LV ++VGL ++EVFR +V FL
Sbjct:    7 RALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAA--ALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHAR---------GAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCG-GLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRARAERGRGAPSSGSGSDRTEAATGRNLPRHEEADGDNSKVGKTDAGAVGEGSGPTDGERG----RDGRATRGAAAGEGGLVPALVGLESEEVFRTIVCFL 543          
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Match: D8LQE2_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.410e-47
Identity = 88/138 (63.77%), Postives = 109/138 (78.99%), Query Frame = 1
Query:  181 MSAPPRREDRTRLDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDMDLFTRLMDAGADGSAGWRGCDGQTLLGAA-CGAPHKSEEMVLALLQAGSKNDVNVTFGAKQESALHVAAHSGEEKVANTLMLAGANPN 591
            M AP R+  R+RLDGFE+EIF+LV+E A  +QW++W RAPLEHATA+G++DLFTRLMDAGADG AGWRGC G+TLLGAA CG  + S++MV ALL+AG++ DVNV FG   ES LHV+A  G E     LM+AGA+PN
Sbjct:    1 MYAPKRKGHRSRLDGFEIEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACG--NNSDKMVRALLEAGARRDVNVRFGNTNESTLHVSAARGAEASCTALMIAGADPN 136          
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 2.360e-47
Identity = 159/453 (35.10%), Postives = 207/453 (45.70%), Query Frame = 1
Query:  181 MSAPPRRE-DRTRLDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDMDLFTRLMDAGADGSAGWRGCDGQTLLGAACGAPHKSEEMVLALLQAGSKNDVNVTFGAKQESALHVAAHSGEEKVANTLMLAGANPNALNVYTQSXXXXXXXXXXXXXXXXXXXXXXXXSTKVARSGGTXXXXXXXXXXXXXXXXXXXXXXDPDSLNIYGAXXXXXXXXXXXXXXXXXXXXXGASLHIRETIYPG-YSALDIAARRGHADVVRVLLAHGCSVSLSDAYGCTALHYAAYSGNILVSDNSGVVRMLLEAGAD-----TDGGLETPLQ--IETRMGPRSTMCALLEGGANVNACSSDDGHTPLHEACHESNVGAVELLLRWGADEKLLDTAGSTVYDVLGAWEEEGVEGDSDYNEERKANDQRIRHMLERAPADRSWRRRRWLVLARSCPAKVHL 1512
            MSA  R E DR+R+DGF++EIF+LV+  ATS+QW+EWLRAPLEHA AK    L T      ADG                    H SE+MV  LL AG+ +D NV FG + ESALHV    G E     LM+AGA+P   +    +                             R  G+                        +   +                        GA+  +R  +  G +S+LD+AA RGHADV+  LL         D        + A S +  V DN   VR LL  GAD     TD    +PL   ++ R+     +               DD + PLH AC  S+V  VELLLRWGADEKL ++ G T  DV+ A ++    GD D ++ER+A+DQRI  M+   PADRSWRRR WLVL+RSCP +V +
Sbjct:    1 MSASKREEEDRSRVDGFKIEIFKLVQREATSEQWKEWLRAPLEHAAAKELGSLHT------ADG--------------------HWSEKMVRTLLTAGATDDANVLFGVEHESALHVVLARGAEDSCRALMIAGADPTLRDRGDDTRWFKEMDTRIFNMTSVIERIWVAAVAGHHRVIGSLLLNRADVHAKTASQSTPLHLAASEGRAL--CLSELLLGANNHLEAVQELLAAGANCGLRCMLTNGSHSSLDMAAGRGHADVLTALL---------DKDNI----FFAMSVDGPVHDNGDAVRALLGVGADVNAKTTDSICASPLHLAVDRRIASDGMIXXXXXXXXXXXXXXGDD-NKPLHLACRHSSVHGVELLLRWGADEKLTNSVGKTPADVIRALQQ----GDLD-DKEREADDQRIGRMVALVPADRSWRRRGWLVLSRSCPTRVQI 406          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6605.15327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQN0_ECTSI1.240e-9154.78Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D8LD22_ECTSI1.100e-8653.52MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5L812_9PHAE2.280e-7840.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB27_ECTSI3.170e-7350.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHY5_9PHAE3.810e-6239.70Integrase catalytic domain-containing protein n=2 ... [more]
D7G692_ECTSI5.280e-6139.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ92_ECTSI2.770e-5244.31Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]
A0A6H5K1F4_9PHAE9.110e-5232.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQE2_ECTSI1.410e-4763.77Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L7E1_9PHAE2.360e-4735.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6605contigL-elsbetiae_contig6605:1532..4523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.1
Seed ortholog evalue6.2e-80
Seed eggNOG ortholog2880.D8LQN0
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size1926
Cds size1509
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6605.15327.1prot_L-elsbetiae_contig6605.15327.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6605 1712..3220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.1991177-UTR-L-elsbetiae_contig6605:1531..17111622816731.1991177-UTR-L-elsbetiae_contig6605:1531..1711Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6605 1532..1711 +
1691683771.553532-UTR-L-elsbetiae_contig6605:1531..17111691683771.553532-UTR-L-elsbetiae_contig6605:1531..1711Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6605 1532..1711 +
1622816731.2241936-UTR-L-elsbetiae_contig6605:3220..32211622816731.2241936-UTR-L-elsbetiae_contig6605:3220..3221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6605 3221..3221 +
1691683771.578352-UTR-L-elsbetiae_contig6605:3220..32211691683771.578352-UTR-L-elsbetiae_contig6605:3220..3221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6605 3221..3221 +
1622816731.2392077-UTR-L-elsbetiae_contig6605:4287..45231622816731.2392077-UTR-L-elsbetiae_contig6605:4287..4523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6605 4288..4523 +
1691683771.5884943-UTR-L-elsbetiae_contig6605:4287..45231691683771.5884943-UTR-L-elsbetiae_contig6605:4287..4523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6605 4288..4523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.2138379-CDS-L-elsbetiae_contig6605:1711..32201622816731.2138379-CDS-L-elsbetiae_contig6605:1711..3220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6605 1712..3220 +
1691683771.5696037-CDS-L-elsbetiae_contig6605:1711..32201691683771.5696037-CDS-L-elsbetiae_contig6605:1711..3220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6605 1712..3220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6605.15327.1

>prot_L-elsbetiae_contig6605.15327.1 ID=prot_L-elsbetiae_contig6605.15327.1|Name=mRNA_L-elsbetiae_contig6605.15327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=503bp
MSAPPRREDRTRLDGFELEIFRLVRERATSKQWREWLRAPLEHATAKGDM
DLFTRLMDAGADGSAGWRGCDGQTLLGAACGAPHKSEEMVLALLQAGSKN
DVNVTFGAKQESALHVAAHSGEEKVANTLMLAGANPNALNVYTQSPLHLA
AEAGHEGTVVTLMLKGALPSTKVARSGGTPLHLAAEWGHAQCVSKLVIGG
ADPDSLNIYGATPLHLAVRNNRLRAVEELLAAGASLHIRETIYPGYSALD
IAARRGHADVVRVLLAHGCSVSLSDAYGCTALHYAAYSGNILVSDNSGVV
RMLLEAGADTDGGLETPLQIETRMGPRSTMCALLEGGANVNACSSDDGHT
PLHEACHESNVGAVELLLRWGADEKLLDTAGSTVYDVLGAWEEEGVEGDS
DYNEERKANDQRIRHMLERAPADRSWRRRRWLVLARSCPAKVHLTFEGDS
GGGGSGSGNCVDARGGGKKRTGDQTRNGLEHLVSSVVGLYADEVFRLVVG
FL*
back to top

mRNA from alignment at L-elsbetiae_contig6605:1532..4523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6605.15327.1 ID=mRNA_L-elsbetiae_contig6605.15327.1|Name=mRNA_L-elsbetiae_contig6605.15327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2992bp|location=Sequence derived from alignment at L-elsbetiae_contig6605:1532..4523+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGCTTGCCGCGGCCACGGCGTCACAAAGCAAGTGGAAAAGGGCCCTT TTTTTTCATATACCTTGGCGTGGCGTGGATCGAGACACCACAGACAGTAG CAGTAGTAGTCCACATCTGTGCAGCGGGGAGAAAAACGAAACTCAAAAAG CGGCTCTCATCTGAACGTGGCCTCTCCACGATGTCAGCTCCTCCTCGTCG CGAAGACCGCACTCGCCTTGATGGCTTCGAACTGGAGATTTTCAGACTCG TCCGGGAGCGCGCTACGTCCAAGCAGTGGAGGGAGTGGCTCCGGGCACCT CTAGAGCACGCGACAGCCAAGGGAGACATGGACCTCTTTACGAGGCTGAT GGACGCTGGGGCCGACGGCAGTGCAGGCTGGCGCGGCTGCGATGGGCAAA CGTTGCTCGGTGCTGCTTGTGGTGCACCCCACAAGAGCGAGGAGATGGTG CTAGCGCTACTGCAAGCGGGCTCAAAGAATGACGTGAACGTTACGTTCGG AGCAAAGCAGGAGTCAGCACTCCATGTGGCAGCTCATTCCGGCGAAGAGA AGGTAGCCAATACGCTCATGCTGGCTGGAGCAAATCCGAACGCGCTGAAT GTGTACACGCAAAGCCCGTTGCACCTGGCCGCTGAAGCAGGGCACGAGGG CACGGTTGTTACCCTCATGCTGAAAGGCGCCCTTCCCAGCACAAAGGTCG CGCGCTCTGGCGGGACTCCTCTTCATCTAGCTGCCGAGTGGGGCCATGCG CAGTGTGTGTCCAAGCTTGTGATCGGCGGGGCAGACCCGGACTCGCTCAA CATCTACGGTGCAACACCACTTCACCTGGCCGTGCGAAACAACCGCCTCC GGGCGGTCGAAGAGCTCTTGGCTGCCGGTGCAAGCCTCCACATTCGTGAG ACAATTTACCCAGGTTATTCTGCACTCGATATCGCGGCGCGCAGGGGCCA TGCGGACGTTGTGAGAGTACTTTTGGCGCATGGATGTAGCGTCTCGTTGT CCGATGCATATGGCTGCACAGCCCTGCACTATGCAGCTTACAGCGGTAAC ATACTTGTTTCCGACAACAGCGGCGTTGTCCGGATGTTGCTCGAAGCCGG GGCTGACACCGATGGAGGACTCGAGACCCCGCTCCAAATAGAGACGAGGA TGGGACCAAGAAGTACAATGTGCGCCTTGCTGGAAGGCGGTGCTAACGTG AATGCTTGCTCTAGCGATGACGGACACACCCCGCTCCACGAGGCTTGCCA TGAATCCAATGTTGGTGCTGTAGAACTTTTGCTGCGCTGGGGGGCAGATG AGAAGCTGCTGGACACCGCTGGATCGACGGTGTACGACGTGCTGGGAGCA TGGGAAGAAGAAGGTGTCGAAGGAGATAGCGACTACAACGAGGAACGCAA GGCCAATGACCAGCGCATTCGCCACATGCTGGAGCGCGCTCCGGCCGACA GGTCCTGGCGTCGCCGCCGCTGGCTGGTGCTGGCCCGCTCCTGTCCGGCC AAGGTGCACCTTACATTTGAGGGTGACAGCGGCGGCGGTGGCAGTGGCAG TGGCAACTGTGTCGATGCGCGCGGAGGAGGCAAAAAAAGGACTGGAGACC AGACAAGGAACGGCCTGGAACATTTGGTCAGCAGTGTGGTTGGACTCTAT GCGGATGAAGTTTTCCGCTTGGTAGTGGGCTTCCTCTAAGGTGAGTACGA GCGACGTTTGTTGGTACTTGTCGAGACGTGAGTCGGAATTTGCGATTGCT CGAATGCTGCGTTCTAATATGGCGATGGGTGCCGTCATCAGCCAATCGCG TCGGGTCAACCTGCAGAGGAGGAGCGACTTATTGTTTCGCCAGATGCGTA CACATGTACTGTACATATGTATGTACACACACTGAGGAAGAGGGTTGGTC TGGTGTGTTCTTGCTTCGTTTGGACACTCTCGTGTTTGCCGGTATTCTGC TCCGAAACCTTGCCGAGGTTTGAGAGTGTAGGTGCTGGGGTTGTGAATAA GGTAGTTGTTTTAGGTCTCTTCTTGTCTTGGAGAACTCGCATATAATTTA CCTCCACATTGTTCGTTAACTTTGTGTAGCTCTCCCTCATTGAAAGCCTA GCCAGTGTATCGTTGCCCACATGAGCAATCCAGCCGTACCCAATATAACC TCTCTCCCTCATTGAAAGCCTAGCCAGTGTATCGTTGCCCACATGAGCAA TCCAGCCGTACCCAATATAACCTCTGTGCTGCTTAGCAATAGGAAACGAT GTAGCTGCGTTTGCGTGTCTGCTGTCTAGTTCTCTACCCACGCTGTCTAG GGATGGTCGAGCTGCGATTGACAGGTATTTGCATCATTTGCAGCCCGTTC AAATGTCAATCTCTCGAGTATTGGCGCGCAACACAGAGCTATAAAATAGC CCCGAGTCACGTTGCATATACAGAAGCCGACACGTCTGTCGTCAGTAGGT CTGTGTGTCTCGTTTATTTGTGGACAGCACGAAAACGTAAATGATATTCG ATGCTAATGTACGCCGTACGCTGGTCAGTAGGCAGGGATCATCTAGCGCA TGTTGTACCGCAGCCTGTCTCGTGACTTTCTCTAGTGTGTACCGTCAGCT TGCCTCGCACTCAATTGTCTTACCCGCCAACTTCGAACCGTTGATAGCCC CCCCCCCCCCCCCCCCCCCCCCCCCTCCTCCTCCTCCTCCTCCTCCTCCG TCGCCGTCTTCTTCATTCTGTCCTTATGCAAATGATCTCCTCGTATGTAT ATCTAGTGGCTGCAGAAACTCTCTCAATCTGGCGGCTTCTTGGATCGGAC ATTCCCATATATACTGCTGCAGTGTCGCCGGTTCGTTTTTGTCTTTTTAC TGGTGGGCATTTAGTCAACTCTGTTCTGCCTGGAAGGCGCTTAGCAGCAA TCAGGCGCCACCAGCAAGCTTGTTGGCACTAAAGCTCAGGGACAGCTGTC CGGTTGATTGGGCACTGTATCCCGTGCTTCAACGGAGGGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6605:1532..4523+

>mRNA_L-elsbetiae_contig6605.15327.1 ID=mRNA_L-elsbetiae_contig6605.15327.1|Name=mRNA_L-elsbetiae_contig6605.15327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3018bp|location=Sequence derived from alignment at L-elsbetiae_contig6605:1532..4523+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGCTCCTCCTCGTCGCGAAGACCGCACTCGCCTTGATGGCTTCGA
ACTGGAGATTTTCAGACTCGTCCGGGAGCGCGCTACGTCCAAGCAGTGGA
GGGAGTGGCTCCGGGCACCTCTAGAGCACGCGACAGCCAAGGGAGACATG
GACCTCTTTACGAGGCTGATGGACGCTGGGGCCGACGGCAGTGCAGGCTG
GCGCGGCTGCGATGGGCAAACGTTGCTCGGTGCTGCTTGTGGTGCACCCC
ACAAGAGCGAGGAGATGGTGCTAGCGCTACTGCAAGCGGGCTCAAAGAAT
GACGTGAACGTTACGTTCGGAGCAAAGCAGGAGTCAGCACTCCATGTGGC
AGCTCATTCCGGCGAAGAGAAGGTAGCCAATACGCTCATGCTGGCTGGAG
CAAATCCGAACGCGCTGAATGTGTACACGCAAAGCCCGTTGCACCTGGCC
GCTGAAGCAGGGCACGAGGGCACGGTTGTTACCCTCATGCTGAAAGGCGC
CCTTCCCAGCACAAAGGTCGCGCGCTCTGGCGGGACTCCTCTTCATCTAG
CTGCCGAGTGGGGCCATGCGCAGTGTGTGTCCAAGCTTGTGATCGGCGGG
GCAGACCCGGACTCGCTCAACATCTACGGTGCAACACCACTTCACCTGGC
CGTGCGAAACAACCGCCTCCGGGCGGTCGAAGAGCTCTTGGCTGCCGGTG
CAAGCCTCCACATTCGTGAGACAATTTACCCAGGTTATTCTGCACTCGAT
ATCGCGGCGCGCAGGGGCCATGCGGACGTTGTGAGAGTACTTTTGGCGCA
TGGATGTAGCGTCTCGTTGTCCGATGCATATGGCTGCACAGCCCTGCACT
ATGCAGCTTACAGCGGTAACATACTTGTTTCCGACAACAGCGGCGTTGTC
CGGATGTTGCTCGAAGCCGGGGCTGACACCGATGGAGGACTCGAGACCCC
GCTCCAAATAGAGACGAGGATGGGACCAAGAAGTACAATGTGCGCCTTGC
TGGAAGGCGGTGCTAACGTGAATGCTTGCTCTAGCGATGACGGACACACC
CCGCTCCACGAGGCTTGCCATGAATCCAATGTTGGTGCTGTAGAACTTTT
GCTGCGCTGGGGGGCAGATGAGAAGCTGCTGGACACCGCTGGATCGACGG
TGTACGACGTGCTGGGAGCATGGGAAGAAGAAGGTGTCGAAGGAGATAGC
GACTACAACGAGGAACGCAAGGCCAATGACCAGCGCATTCGCCACATGCT
GGAGCGCGCTCCGGCCGACAGGTCCTGGCGTCGCCGCCGCTGGCTGGTGC
TGGCCCGCTCCTGTCCGGCCAAGGTGCACCTTACATTTGAGGGTGACAGC
GGCGGCGGTGGCAGTGGCAGTGGCAACTGTGTCGATGCGCGCGGAGGAGG
CAAAAAAAGGACTGGAGACCAGACAAGGAACGGCCTGGAACATTTGGTCA
GCAGTGTGGTTGGACTCTATGCGGATGAAGTTTTCCGCTTGGTAGTGGGC
TTCCTCTAAATGTCAGCTCCTCCTCGTCGCGAAGACCGCACTCGCCTTGA
TGGCTTCGAACTGGAGATTTTCAGACTCGTCCGGGAGCGCGCTACGTCCA
AGCAGTGGAGGGAGTGGCTCCGGGCACCTCTAGAGCACGCGACAGCCAAG
GGAGACATGGACCTCTTTACGAGGCTGATGGACGCTGGGGCCGACGGCAG
TGCAGGCTGGCGCGGCTGCGATGGGCAAACGTTGCTCGGTGCTGCTTGTG
GTGCACCCCACAAGAGCGAGGAGATGGTGCTAGCGCTACTGCAAGCGGGC
TCAAAGAATGACGTGAACGTTACGTTCGGAGCAAAGCAGGAGTCAGCACT
CCATGTGGCAGCTCATTCCGGCGAAGAGAAGGTAGCCAATACGCTCATGC
TGGCTGGAGCAAATCCGAACGCGCTGAATGTGTACACGCAAAGCCCGTTG
CACCTGGCCGCTGAAGCAGGGCACGAGGGCACGGTTGTTACCCTCATGCT
GAAAGGCGCCCTTCCCAGCACAAAGGTCGCGCGCTCTGGCGGGACTCCTC
TTCATCTAGCTGCCGAGTGGGGCCATGCGCAGTGTGTGTCCAAGCTTGTG
ATCGGCGGGGCAGACCCGGACTCGCTCAACATCTACGGTGCAACACCACT
TCACCTGGCCGTGCGAAACAACCGCCTCCGGGCGGTCGAAGAGCTCTTGG
CTGCCGGTGCAAGCCTCCACATTCGTGAGACAATTTACCCAGGTTATTCT
GCACTCGATATCGCGGCGCGCAGGGGCCATGCGGACGTTGTGAGAGTACT
TTTGGCGCATGGATGTAGCGTCTCGTTGTCCGATGCATATGGCTGCACAG
CCCTGCACTATGCAGCTTACAGCGGTAACATACTTGTTTCCGACAACAGC
GGCGTTGTCCGGATGTTGCTCGAAGCCGGGGCTGACACCGATGGAGGACT
CGAGACCCCGCTCCAAATAGAGACGAGGATGGGACCAAGAAGTACAATGT
GCGCCTTGCTGGAAGGCGGTGCTAACGTGAATGCTTGCTCTAGCGATGAC
GGACACACCCCGCTCCACGAGGCTTGCCATGAATCCAATGTTGGTGCTGT
AGAACTTTTGCTGCGCTGGGGGGCAGATGAGAAGCTGCTGGACACCGCTG
GATCGACGGTGTACGACGTGCTGGGAGCATGGGAAGAAGAAGGTGTCGAA
GGAGATAGCGACTACAACGAGGAACGCAAGGCCAATGACCAGCGCATTCG
CCACATGCTGGAGCGCGCTCCGGCCGACAGGTCCTGGCGTCGCCGCCGCT
GGCTGGTGCTGGCCCGCTCCTGTCCGGCCAAGGTGCACCTTACATTTGAG
GGTGACAGCGGCGGCGGTGGCAGTGGCAGTGGCAACTGTGTCGATGCGCG
CGGAGGAGGCAAAAAAAGGACTGGAGACCAGACAAGGAACGGCCTGGAAC
ATTTGGTCAGCAGTGTGGTTGGACTCTATGCGGATGAAGTTTTCCGCTTG
GTAGTGGGCTTCCTCTAA
back to top